Re: [FLASH-BUGS] 3 flash2.1 bugs

From: Greg Weirs (weirs@flash.uchicago.edu)
Date: Fri Feb 28 2003 - 15:15:52 CST

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    Dear Erik-Jan,

    Thank you for your report.

    The second and third bugs you list are indeed errors, which I am looking
    into now. I haven't completely verified them yet but your modifications
    seem to be correct.

    Greg

    __________________

    Greg Weirs
    weirs@flash.uchicago.edu
    773 834 3228
    __________________

    On Fri, 28 Feb 2003, Erik-Jan Rijkhorst wrote:

    > Dear Flash developers,
    >
    > I found 3 bugs in Flash2.1 which I've listed below.
    >
    > Some info on the system I'm using:
    > (http://www.sara.nl/userinfo/teras/description/index.html)
    > Machine: SGI Origin 3800
    > Compiler: MIPSpro Fortran 90 compiler
    > Operating system: IRIX64 p1 6.5 04101930 IP35
    >
    > ---------------------
    >
    > Hard coded value in source/mesh/amr/paramesh2.0/ref_marking.F90:
    >
    > ...
    > ! compute the error
    > num = 0.
    > denom = 0.
    >
    > do kk = 1, ndim2
    > num = num + delu2(kk)**2
    > denom = denom + (delu3(kk) + &
    > & (epsil*delu4(kk)+1.e-20))**2
    > end do
    > ...
    >
    > When using very low densities (of the order of 1e-26) the code won't
    > refine. I solved this by putting my own version of ref_marking.F90 in the
    > setups/problem directory and replaced the value of 1.e-20 by 1.e-200. It
    > would be nice to change this to a parameter in a future Flash release?
    >
    > ---------------------
    >
    > Multiplication by cf_area is done twice at step 7b in
    > source/hydro/explicit/delta_form/kurganov/hydro_3d.F90
    > (you'll only notice this when running 3D simulations...)
    >
    > ...
    > !!!!!!!!! Step 7b: Apply geometry factors.
    > !!!!!!!!! Update deltaU.
    > do j=1,ny
    > do i=1,nx
    > cf_area = ( ( xr(i)-xl(i) ) ) &
    > * ( ( yr(j)-yl(j) ) )
    > flux_block(:,i,j,:) = flux_block(:,i,j,:)* cf_area
    > do k=1,nz
    > c_volume_i = 1.0/( cf_area*( zr(k) - zl(k) ) )
    > flux_block(:,i,j,k) = flux_block(:,i,j,k)* cf_area
    > du_local(:,i,j,k) = du_local(:,i,j,k ) - &
    > c_volume_i*( flux_block(:,i,j,k ) &
    > - flux_block(:,i,j,k-1) )
    > enddo
    > enddo
    > enddo
    > ...
    >
    > I think this should be
    >
    > ...
    > !!!!!!!!! Step 7b: Apply geometry factors.
    > !!!!!!!!! Update deltaU.
    > do j=1,ny
    > do i=1,nx
    > cf_area = ( ( xr(i)-xl(i) ) ) &
    > * ( ( yr(j)-yl(j) ) )
    > flux_block(:,i,j,:) = flux_block(:,i,j,:)* cf_area
    > do k=1,nz
    > c_volume_i = 1.0/( cf_area*( zr(k) - zl(k) ) )
    > du_local(:,i,j,k) = du_local(:,i,j,k ) - &
    > c_volume_i*( flux_block(:,i,j,k ) &
    > - flux_block(:,i,j,k-1) )
    > enddo
    > enddo
    > enddo
    > ...
    >
    > ---------------------
    >
    > Wrong index in source/formulation/state_form/du_update_zface.F90:
    > I used this formulation to implement an approximate Rieman solver that we
    > have here at Leiden.
    > I copied source/hydro/explicit/delta_form/kurganov to my own
    > source/hydro/explicit/delta_form/roe directory (see previous bug).
    > Note: you won't notice this bug until you start running 3D sims...
    >
    > ...
    > do 200 j=1,ny
    > ! Transpose ys into eos1d format.
    > do n=1,ns
    > ys_line(:,n) = ys(n,:,j)
    > enddo
    > call eos1d(2, 1, nx, &
    > rho(:,k), &
    > t(:,k), &
    > p(:,k), &
    > eint(:,k), &
    > gamma_c(:,k), &
    > ys_line(:,: ), &
    > nx,ns )
    > 200 continue
    > ...
    >
    > I changed this to:
    >
    > ...
    > do 200 j=1,ny
    > ! Transpose ys into eos1d format.
    > do n=1,ns
    > ys_line(:,n) = ys(n,:,j)
    > enddo
    > call eos1d(2, 1, nx, &
    > rho(:,j), &
    > t(:,j), &
    > p(:,j), &
    > eint(:,j), &
    > gamma_c(:,j), &
    > ys_line(:,: ), &
    > nx,ns )
    > 200 continue
    > ...
    >
    > ---------------------
    >
    > cheers,
    >
    > Erik-Jan Rijkhorst
    >



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