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    AuthorTitleYearJournal/ProceedingsReftypeDOI/URL
    de Val-Borro, M., Artymowicz, P., D'Angelo, G. & Peplinski, A. Vortex generation in protoplanetary disks with an embedded giant planet 2007 Astronomy and Astrophysics
    Vol. 471, pp. 1043-1055 
    article DOI  
    BibTeX:
    @article{deValBorro2007,
      author = {de Val-Borro, M. and Artymowicz, P. and D'Angelo, G. and Peplinski, A.},
      title = {Vortex generation in protoplanetary disks with an embedded giant planet},
      journal = {Astronomy and Astrophysics},
      year = {2007},
      volume = {471},
      pages = {1043-1055},
      doi = {http://dx.doi.org/10.1051/0004-6361:20077169}
    }
    
    de Val-Borro, M., Edgar, R.G., Artymowicz, P., Ciecielag, P., Cresswell, P., D'Angelo, G., Delgado-Donate, E.J., Dirksen, G., Fromang, S., Gawryszczak, A., Klahr, H., Kley, W., Lyra, W., Masset, F., Mellema, G., Nelson, R.P., Paardekooper, S.-J., Peplinski, A., Pierens, A., Plewa, T., Rice, K., Schäfer, C. & Speith, R. A comparative study of disc-planet interaction 2006 Monthly Notices of the RAS
    Vol. 370, pp. 529-558 
    article DOI  
    BibTeX:
    @article{deValBorro2006,
      author = {de Val-Borro, M. and Edgar, R.~G. and Artymowicz, P. and Ciecielag, P. and Cresswell, P. and D'Angelo, G. and Delgado-Donate, E.~J. and Dirksen, G. and Fromang, S. and Gawryszczak, A. and Klahr, H. and Kley, W. and Lyra, W. and Masset, F. and Mellema, G. and Nelson, R.~P. and Paardekooper, S.-J. and Peplinski, A. and Pierens, A. and Plewa, T. and Rice, K. and Schäfer, C. and Speith, R.},
      title = {A comparative study of disc-planet interaction},
      journal = {Monthly Notices of the RAS},
      year = {2006},
      volume = {370},
      pages = {529-558},
      doi = {http://dx.doi.org/10.1111/j.1365-2966.2006.10488.x}
    }
    
    Aarestad, P.M., Ching, A., Thiruvathukal, G.K. & Choudhary, A.N. Scalable Approaches for Supporting MPI-IO Atomicity 2006 Proceedings of the Sixth IEEE International Symposium on Cluster Computing and the Grid (CCGRID'06)-Volume 00, pp. 35-42  article  
    BibTeX:
    @article{Aarestad2006,
      author = {Aarestad, P. M. and Ching, A. and Thiruvathukal, G. K. and Choudhary, A. N.},
      title = {Scalable Approaches for Supporting MPI-IO Atomicity},
      journal = {Proceedings of the Sixth IEEE International Symposium on Cluster Computing and the Grid (CCGRID'06)-Volume 00},
      publisher = {IEEE Computer Society Washington, DC, USA},
      year = {2006},
      pages = {35--42}
    }
    
    Agertz, O., Moore, B., Stadel, J., Potter, D., Miniati, F., Read, J., Mayer, L., Gawryszczak, A., Kravtsov, A., Nordlund, Å., Pearce, F., Quilis, V., Rudd, D., Springel, V., Stone, J., Tasker, E., Teyssier, R., Wadsley, J. & Walder, R. Fundamental differences between SPH and grid methods 2007 Monthly Notices of the RAS
    Vol. 380, pp. 963-978 
    article DOI  
    BibTeX:
    @article{Agertz2007,
      author = {Agertz, O. and Moore, B. and Stadel, J. and Potter, D. and Miniati, F. and Read, J. and Mayer, L. and Gawryszczak, A. and Kravtsov, A. and Nordlund, Å. and Pearce, F. and Quilis, V. and Rudd, D. and Springel, V. and Stone, J. and Tasker, E. and Teyssier, R. and Wadsley, J. and Walder, R.},
      title = {Fundamental differences between SPH and grid methods},
      journal = {Monthly Notices of the RAS},
      year = {2007},
      volume = {380},
      pages = {963-978},
      doi = {http://dx.doi.org/10.1111/j.1365-2966.2007.12183.x}
    }
    
    Ahmed, N.M. The heating of the cooling flow (The feedback effervescent heating model) 2007 ArXiv e-prints
    Vol. 710 
    article  
    BibTeX:
    @article{Ahmed2007,
      author = {Ahmed, N.~M.},
      title = {The heating of the cooling flow (The feedback effervescent heating model)},
      journal = {ArXiv e-prints},
      year = {2007},
      volume = {710}
    }
    
    Ahrens, J., Heitmann, K., Habib, S., Ankeny, L., McCormick, P., Inman, J., Armstrong, R. & Ma, K.-L. Quantitative and comparative visualization applied to cosmological simulations 2006 Journal of Physics Conference Series
    Vol. 46, pp. 526-534 
    article DOI  
    BibTeX:
    @article{Ahrens2006,
      author = {Ahrens, J. and Heitmann, K. and Habib, S. and Ankeny, L. and McCormick, P. and Inman, J. and Armstrong, R. and Ma, K.-L.},
      title = {Quantitative and comparative visualization applied to cosmological simulations},
      journal = {Journal of Physics Conference Series},
      year = {2006},
      volume = {46},
      pages = {526-534},
      doi = {http://dx.doi.org/10.1088/1742-6596/46/1/073}
    }
    
    Akashi, M. & Soker, N. Impulsive Ejection of Gas In Bipolar Planetary Nebulae 2013 arXiv preprint arXiv:1305.6264  article  
    BibTeX:
    @article{akashi2013impulsive,
      author = {Akashi, Muhammad and Soker, Noam},
      title = {Impulsive Ejection of Gas In Bipolar Planetary Nebulae},
      journal = {arXiv preprint arXiv:1305.6264},
      year = {2013}
    }
    
    Akli, K.U., Orban, C., Schumacher, D., Storm, M., Fatenejad, M., Lamb, D. & Freeman, R.R. Coupling of high-intensity laser light to fast electrons in cone-guided fast ignition 2012 Phys. Rev. E
    Vol. 86, pp. 065402 
    article DOI URL 
    BibTeX:
    @article{PhysRevE.86.065402,
      author = {Akli, K. U. and Orban, C. and Schumacher, D. and Storm, M. and Fatenejad, M. and Lamb, D. and Freeman, R. R.},
      title = {Coupling of high-intensity laser light to fast electrons in cone-guided fast ignition},
      journal = {Phys. Rev. E},
      publisher = {American Physical Society},
      year = {2012},
      volume = {86},
      pages = {065402},
      url = {http://link.aps.org/doi/10.1103/PhysRevE.86.065402},
      doi = {http://dx.doi.org/10.1103/PhysRevE.86.065402}
    }
    
    Alexakis, A., Calder, A.C., Dursi, L.J. & Olson, K. PARAMESH-enabled numerical simulations of wind driven gravity waves on the surface of a white dwarf 2003 Chicago Workshop on Adaptive Mesh Refinement Methods  inproceedings  
    BibTeX:
    @inproceedings{Alexakis2003a,
      author = {Alexakis, A. and Calder, A. C. and Dursi, L. J. and Olson, K.},
      title = {PARAMESH-enabled numerical simulations of wind driven gravity waves on the surface of a white dwarf},
      booktitle = {Chicago Workshop on Adaptive Mesh Refinement Methods},
      year = {2003}
    }
    
    Alexakis, A., Calder, A.C., Dursi, L.J., Rosner, R., Truran, J.W., Fryxell, B., Zingale, M., Timmes, F.X., Olson, K. & Ricker, P. On the nonlinear evolution of wind-driven gravity waves 2004 Physics of Fluids
    Vol. 16, pp. 3256-3268 
    article DOI  
    BibTeX:
    @article{Alexakis2004,
      author = {Alexakis, A. and Calder, A.~C. and Dursi, L.~J. and Rosner, R. and Truran, J.~W. and Fryxell, B. and Zingale, M. and Timmes, F.~X. and Olson, K. and Ricker, P.},
      title = {On the nonlinear evolution of wind-driven gravity waves},
      journal = {Physics of Fluids},
      year = {2004},
      volume = {16},
      pages = {3256-3268},
      doi = {http://dx.doi.org/10.1063/1.1771695}
    }
    
    Alexakis, A., Calder, A.C., Heger, A., Brown, E.F., Dursi, L.J., Truran, J.W., Rosner, R., Lamb, D.Q., Timmes, F.X., Fryxell, B., Zingale, M., Ricker, P.M. & Olson, K. On Heavy Element Enrichment in Classical Novae 2004 Astrophysical Journal
    Vol. 602, pp. 931-937 
    article DOI  
    BibTeX:
    @article{Alexakis2004a,
      author = {Alexakis, A. and Calder, A.~C. and Heger, A. and Brown, E.~F. and Dursi, L.~J. and Truran, J.~W. and Rosner, R. and Lamb, D.~Q. and Timmes, F.~X. and Fryxell, B. and Zingale, M. and Ricker, P.~M. and Olson, K.},
      title = {On Heavy Element Enrichment in Classical Novae},
      journal = {Astrophysical Journal},
      year = {2004},
      volume = {602},
      pages = {931-937},
      doi = {http://dx.doi.org/10.1086/381086}
    }
    
    Almasi, G., Bhanot, G., Chen, D., Eleftheriou, M., Fitch, B., Gara, A., Germain, R., Gupta, M., Pitman, M., Rayshubskiy, A., Sexton, J., Suits, F., Vranas, P., Walkup, B., Ward, T., Zhestkov, Y., Curioni, A., Curioni, W., Archer, C., Moreira, J., Loft, R., Tufo, H., Voran, T. & Riley, K. Early Experience with Scientific Applications on the BlueGene/L Supercomputer 2005 Proceedings of the Euro-Par 2005 Parallel Processing: 11th International Euro-Par Conference  inproceedings  
    BibTeX:
    @inproceedings{Almasi2005,
      author = {Almasi, G. and Bhanot, G. and Chen, D. and Eleftheriou, M. and Fitch, B. and Gara, A. and Germain, R. and Gupta, M. and Pitman, M.C. and Rayshubskiy, A. and Sexton, J. and Suits, F. and Vranas, P. and Walkup, B. and Ward, T.J.C. and Zhestkov, Y. and Curioni, A. and Curioni, W. and Archer, C. and Moreira, J.E. and Loft, R.E. and Tufo, H.M. and Voran, T. and Riley, K.},
      title = {Early Experience with Scientific Applications on the BlueGene/L Supercomputer},
      booktitle = {Proceedings of the Euro-Par 2005 Parallel Processing: 11th International Euro-Par Conference},
      year = {2005}
    }
    
    Almgren, A., Bell, J., Nonaka, A. & Zingale, M. Low Mach Number Modeling of Type Ia Supernovae. III. Reactions 2008 The Astrophysical Journal
    Vol. 684, pp. 449 
    article  
    BibTeX:
    @article{almgren2008low,
      author = {Almgren, AS and Bell, JB and Nonaka, A. and Zingale, M.},
      title = {Low Mach Number Modeling of Type Ia Supernovae. III. Reactions},
      journal = {The Astrophysical Journal},
      publisher = {IOP Publishing},
      year = {2008},
      volume = {684},
      pages = {449}
    }
    
    Almgren, A.S., Beckner, V.E., Bell, J.B., Day, M.S., Howell, L.H., Joggerst, C.C., Lijewski, M.J., Nonaka, A., Singer, M. & Zingale, M. CASTRO: A new compressible astrophysical solver. I. Hydrodynamics and self-gravity 2010 The Astrophysical Journal
    Vol. 715, pp. 1221 
    article  
    BibTeX:
    @article{almgren2010castro,
      author = {Almgren, A. S. and Beckner, V. E. and Bell, J. B. and Day, M. S. and Howell, L. H. and Joggerst, C. C. and Lijewski, M. J. and Nonaka, A. and Singer, M. and Zingale, M.},
      title = {CASTRO: A new compressible astrophysical solver. I. Hydrodynamics and self-gravity},
      journal = {The Astrophysical Journal},
      publisher = {IOP Publishing},
      year = {2010},
      volume = {715},
      pages = {1221}
    }
    
    Almgren, A.S., Bell, J.B., Nonaka, A. & Zingale, M. A New Low Mach Number Approach in Astrophysics 2009 Computing in Science and Engineering
    Vol. 11, pp. 24-33 
    article DOI  
    BibTeX:
    @article{Almgren2009,
      author = {Ann S. Almgren and John B. Bell and Andy Nonaka and Michael Zingale},
      title = {A New Low Mach Number Approach in Astrophysics},
      journal = {Computing in Science and Engineering},
      publisher = {IEEE Computer Society},
      year = {2009},
      volume = {11},
      pages = {24-33},
      doi = {http://doi.ieeecomputersociety.org/10.1109/MCSE.2009.21}
    }
    
    Almgren, A.S., Bell, J.B., Rendleman, C.A. & Zingale, M. Low Mach Number Modeling of Type Ia Supernovae. II. Energy Evolution 2006 Astrophysical Journal
    Vol. 649, pp. 927-938 
    article DOI  
    BibTeX:
    @article{Almgren2006,
      author = {Almgren, A.~S. and Bell, J.~B. and Rendleman, C.~A. and Zingale, M.},
      title = {Low Mach Number Modeling of Type Ia Supernovae. II. Energy Evolution},
      journal = {Astrophysical Journal},
      year = {2006},
      volume = {649},
      pages = {927-938},
      doi = {http://dx.doi.org/10.1086/507089}
    }
    
    Almgren, A.S., Bell, J.B., Rendleman, C.A. & Zingale, M. Low Mach Number Modeling of Type Ia Supernovae. I. Hydrodynamics 2006 Astrophysical Journal
    Vol. 637, pp. 922-936 
    article DOI  
    BibTeX:
    @article{Almgren2006a,
      author = {Almgren, A.~S. and Bell, J.~B. and Rendleman, C.~A. and Zingale, M.},
      title = {Low Mach Number Modeling of Type Ia Supernovae. I. Hydrodynamics},
      journal = {Astrophysical Journal},
      year = {2006},
      volume = {637},
      pages = {922-936},
      doi = {http://dx.doi.org/10.1086/498426}
    }
    
    Anderson, E., Heitmann, J., Habib, K. & Silva, S. Provenance in Comparative Analysis: A Study in Cosmology 2008 Computing in Science & Engineering
    Vol. 10(3), pp. 30-37 
    article  
    BibTeX:
    @article{Anderson2008,
      author = {Anderson, E.W.A. and Heitmann, J.P. and Habib, K. and Silva, S.},
      title = {Provenance in Comparative Analysis: A Study in Cosmology},
      journal = {Computing in Science & Engineering},
      year = {2008},
      volume = {10},
      number = {3},
      pages = {30--37}
    }
    
    Andrews, P., Margo, M., Chourasia, A. & Towns, J. Enabling HPC E-Science via Integrated Grid Infrastructure 2006
    Vol. 0Proceedings of the Second IEEE International Conference on e-Science and Grid Computing (e-Science'06), pp. 156 
    inproceedings DOI  
    BibTeX:
    @inproceedings{Andrews2006,
      author = {Phil Andrews and Martin Margo and Amit Chourasia and John Towns},
      title = {Enabling HPC E-Science via Integrated Grid Infrastructure},
      booktitle = {Proceedings of the Second IEEE International Conference on e-Science and Grid Computing (e-Science'06)},
      publisher = {IEEE Computer Society},
      year = {2006},
      volume = {0},
      pages = {156},
      doi = {http://doi.ieeecomputersociety.org/10.1109/E-SCIENCE.2006.59}
    }
    
    Antonuccio-Delogu, V. & Silk, J. AGN Jet-induced Feedback in Galaxies. I. Suppression of Star Formation 2008 Arxiv preprint arXiv:0806.4570  article DOI URL 
    BibTeX:
    @article{Antonuccio-Delogu2008,
      author = {Antonuccio-Delogu, V. and Silk, J.},
      title = {AGN Jet-induced Feedback in Galaxies. I. Suppression of Star Formation},
      journal = {Arxiv preprint arXiv:0806.4570},
      year = {2008},
      url = {http://arxiv.org/pdf/0806.4570},
      doi = {http://dx.doi.org/10.1111/j.1365-2966.2008.13663.x}
    }
    
    Antonuccio-Delogu, V., Becciani, U., Ferro, D. & Romeo, A. A software interface between Parallel Tree- and AMR Hydrocodes. 2003 Memorie della Societa Astronomica Italiana Supplement
    Vol. 1, pp. 109-+ 
    article  
    BibTeX:
    @article{Antonuccio-Delogu2003,
      author = {Antonuccio-Delogu, V. and Becciani, U. and Ferro, D. and Romeo, A.},
      title = {A software interface between Parallel Tree- and AMR Hydrocodes.},
      journal = {Memorie della Societa Astronomica Italiana Supplement},
      year = {2003},
      volume = {1},
      pages = {109-+}
    }
    
    Antonuccio-Delogu, V., Becciani, U. & Pagliaro, A. Simulations of the Magnetic Field Structure in the Local Minivoid 2004 Nuclear Physics B Proceedings Supplements
    Vol. 136, pp. 244-249 
    article DOI  
    BibTeX:
    @article{Antonuccio-Delogu2004,
      author = {Antonuccio-Delogu, V. and Becciani, U. and Pagliaro, A.},
      title = {Simulations of the Magnetic Field Structure in the Local Minivoid},
      journal = {Nuclear Physics B Proceedings Supplements},
      year = {2004},
      volume = {136},
      pages = {244-249},
      doi = {http://dx.doi.org/10.1016/j.nuclphysbps.2004.10.022}
    }
    
    Antypas, K. Allinea DDT as a Parallel Debugging Alternative to Totalview 2007 Lawrence Berkeley National Laboratory(LBNL-62564)  techreport  
    BibTeX:
    @techreport{Antypas2007,
      author = {Antypas, KB},
      title = {Allinea DDT as a Parallel Debugging Alternative to Totalview},
      journal = {Lawrence Berkeley National Laboratory},
      year = {2007},
      number = {LBNL-62564}
    }
    
    Antypas, K., Calder, A., Dubey, A., Fisher, R., Ganapathy, M., Gallagher, J., Reid, L., Riley, K., Sheeler, K. & Taylor, N. Scientific Applications on the Massively Parallel BG/L Machine. 2006 PDPTA, pp. 292-298  inproceedings URL 
    BibTeX:
    @inproceedings{Antypas2006,
      author = {Antypas, K. and Calder, A.C. and Dubey, A. and Fisher, R. and Ganapathy, M.K. and Gallagher, J.B. and Reid, L.B. and Riley, K. and Sheeler, K. and Taylor, N.},
      title = {Scientific Applications on the Massively Parallel BG/L Machine.},
      booktitle = {PDPTA},
      year = {2006},
      pages = {292--298},
      url = {http://dblp.uni-trier.de/rec/bibtex/conf/pdpta/AntypasCDFGGRRST06}
    }
    
    Antypas, K., Calder, A., Dubey, A., Gallagher, J., Joshi, J., Lamb, D., Linde, T., Lusk, E., Messer, O., Mignone, A., Pan, H., Papka, M., Peng, F., Plewa, T., Riley, K., Ricker, P., Sheeler, D., Siegel, A., Taylor, N., Truran, J., Vladimirova, N., Weirs, G., Yu, D. & Zhang, J. Parallel Computational Fluid Dynamics -- Theory and Applications 2006 , pp. 325+  inbook  
    BibTeX:
    @inbook{Antypas2006a,
      author = {Antypas, K.B. and Calder, A.C. and Dubey, A. and Gallagher, J.B. and Joshi, J. and Lamb, D.Q. and Linde, T. and Lusk, E.L. and Messer, O.E.B. and Mignone, A. and Pan, H. and Papka, M. and Peng, F. and Plewa, T. and Riley, K.M. and Ricker, P.M. and Sheeler, D. and Siegel, A. and Taylor, N. and Truran, J.W. and Vladimirova, N. and Weirs, G. and Yu, D. and Zhang, J.},
      title = {Parallel Computational Fluid Dynamics -- Theory and Applications},
      publisher = {Elsevier B.V.},
      year = {2006},
      pages = {325+}
    }
    
    Arneodo, I.A., Benzi, R., Berg, J., Biferale, L., Bodenschatz, E., Busse, A., Calzavarini, E., Castaing, B., Cencini, M., Chevillard, L., Fisher, R., Grauer, R., Homann, H., Lamb, D., Lanotte, A.S., Lévèque, E., Lüthi, B., Mann, J., Mordant, N., Müller, W.-C., Ott, S., Ouellette, N.T., Pinton, J.-F., Pope, S.B., Roux, S.G., Toschi, F., Xu, H. & Yeung, P.K. Universal intermittent properties of particle trajectories in highly turbulent flows 2008 Physical Review Letters
    Vol. 100(25), pp. 254504 
    article  
    BibTeX:
    @article{Arneodo2008,
      author = {Arneodo, I.~A. and Benzi, R. and Berg, J. and Biferale, L. and Bodenschatz, E. and Busse, A. and Calzavarini, E. and Castaing, B. and Cencini, M. and Chevillard, L. and Fisher, R. and Grauer, R. and Homann, H. and Lamb, D. and Lanotte, A. S. and Lévèque, E. and Lüthi, B. and Mann, J. and Mordant, N. and Müller, W.-C. and Ott, S. and Ouellette, N. T. and Pinton, J.-F. and Pope, S. B. and Roux, S.~G. and Toschi, F. and Xu, H. and Yeung, P. K.},
      title = {Universal intermittent properties of particle trajectories in highly turbulent flows},
      journal = {Physical Review Letters},
      year = {2008},
      volume = {100},
      number = {25},
      pages = {254504}
    }
    
    Asida, S., Townsley, D.M., Calder, A.C., Zhiglo, A., Jena, T., Khokhlov, A. & Lamb, D.Q. Verification of an Advection-Diffusion-Reaction Flame Model for Type Ia Supernova Simulations 2007   unpublished  
    BibTeX:
    @unpublished{Asida2007,
      author = {Asida, S. and Townsley, D. M. and Calder, A. C. and Zhiglo, A. and Jena, T. and Khokhlov, A. and Lamb, D. Q.},
      title = {Verification of an Advection-Diffusion-Reaction Flame Model for Type Ia Supernova Simulations},
      year = {2007},
      note = {To be submitted to ApJ}
    }
    
    Athanassiadou, T. & Fields, B. Penetration of Supernova Ejecta in the Solar System 2008 10th Symposium on Nuclei in the Cosmos (NIC X)  inproceedings  
    BibTeX:
    @inproceedings{2008nuco.confE..99A,
      author = {Athanassiadou, T. and Fields, B.},
      title = {Penetration of Supernova Ejecta in the Solar System},
      booktitle = {10th Symposium on Nuclei in the Cosmos (NIC X)},
      year = {2008},
      note = {PoS(NIC X)099}
    }
    
    Balaji, P., Chan, A., Gropp, W., Thakur, R. & Lusk, E. Non-Data-Communication Overheads in MPI: Analysis on Blue Gene/P 2008 Recent Advances in Parallel Virtual Machine and Message Passing Interface: 15th European Pvm/Mpi Users' Group Meeting, Dublin, Ireland, September 7-10, 2008, Proceedings, pp. 13  inproceedings  
    BibTeX:
    @inproceedings{Balaji2008,
      author = {Balaji, P. and Chan, A. and Gropp, W. and Thakur, R. and Lusk, E.},
      title = {Non-Data-Communication Overheads in MPI: Analysis on Blue Gene/P},
      booktitle = {Recent Advances in Parallel Virtual Machine and Message Passing Interface: 15th European Pvm/Mpi Users' Group Meeting, Dublin, Ireland, September 7-10, 2008, Proceedings},
      year = {2008},
      pages = {13}
    }
    
    Banerjee, R. Jets and Outflows from Collapsing Objects 2010 Jets From Young Stars V: High Performance Computing and Applications
    Vol. 5, pp. 201 
    article  
    BibTeX:
    @article{banerjee2010jets,
      author = {Banerjee, R.},
      title = {Jets and Outflows from Collapsing Objects},
      journal = {Jets From Young Stars V: High Performance Computing and Applications},
      publisher = {Springer},
      year = {2010},
      volume = {5},
      pages = {201}
    }
    
    Banerjee, R. Jets and Outflows from Collapsing Objects 2009
    Vol. 791/2009Jets From Young Stars V, pp. 201-222 
    inproceedings DOI  
    BibTeX:
    @inproceedings{Banerjee2009a,
      author = {Banerjee, Robi},
      title = {Jets and Outflows from Collapsing Objects},
      booktitle = {Jets From Young Stars V},
      publisher = {Springer Berlin / Heidelberg},
      year = {2009},
      volume = {791/2009},
      pages = {201-222},
      doi = {http://dx.doi.org/10.1007/978-3-642-03370-4_8}
    }
    
    Banerjee, R., Horn, S. & Klessen, R.S. Jet Driven Turbulence? 2009 Protostellar Jets in Context, pp. 421-427  inproceedings  
    BibTeX:
    @inproceedings{Banerjee2009,
      author = {Banerjee, R. and Horn, S. and Klessen, R. S.},
      title = {Jet Driven Turbulence?},
      booktitle = {Protostellar Jets in Context},
      publisher = {Springer Berlin Heidelberg},
      year = {2009},
      pages = {421-427}
    }
    
    Banerjee, R., Klessen, R.S. & Fendt, C. Can Protostellar Jets Drive Supersonic Turbulence in Molecular Clouds? 2007 The Astrophysical Journal
    Vol. 668(2), pp. 1028-1041 
    article  
    BibTeX:
    @article{Banerjee2007,
      author = {Banerjee, R. and Klessen, R.~S. and Fendt, C.},
      title = {Can Protostellar Jets Drive Supersonic Turbulence in Molecular Clouds?},
      journal = {The Astrophysical Journal},
      year = {2007},
      volume = {668},
      number = {2},
      pages = {1028--1041}
    }
    
    Banerjee, R. & Pudritz, R.E. Massive Star Formation via High Accretion Rates and Early Disk- driven Outflows 2007 Astrophysical Journal
    Vol. 660, pp. 479-488 
    article DOI  
    BibTeX:
    @article{Banerjee2007a,
      author = {Banerjee, R. and Pudritz, R.~E.},
      title = {Massive Star Formation via High Accretion Rates and Early Disk- driven Outflows},
      journal = {Astrophysical Journal},
      year = {2007},
      volume = {660},
      pages = {479-488},
      doi = {http://dx.doi.org/10.1086/512010}
    }
    
    Banerjee, R. & Pudritz, R.E. Outflows and Jets from Collapsing Magnetized Cloud Cores 2006 Astrophysical Journal
    Vol. 641, pp. 949-960 
    article DOI  
    BibTeX:
    @article{Banerjee2006a,
      author = {Banerjee, R. and Pudritz, R.~E.},
      title = {Outflows and Jets from Collapsing Magnetized Cloud Cores},
      journal = {Astrophysical Journal},
      year = {2006},
      volume = {641},
      pages = {949-960},
      doi = {http://dx.doi.org/10.1086/500496}
    }
    
    Banerjee, R., Pudritz, R.E. & Anderson, D.W. Supersonic turbulence, filamentary accretion and the rapid assembly of massive stars and discs 2006 Monthly Notices of the RAS
    Vol. 373, pp. 1091-1106 
    article DOI  
    BibTeX:
    @article{Banerjee2006b,
      author = {Banerjee, R. and Pudritz, R.~E. and Anderson, D.~W.},
      title = {Supersonic turbulence, filamentary accretion and the rapid assembly of massive stars and discs},
      journal = {Monthly Notices of the RAS},
      year = {2006},
      volume = {373},
      pages = {1091-1106},
      doi = {http://dx.doi.org/10.1111/j.1365-2966.2006.11089.x}
    }
    
    Banerjee, R., Pudritz, R.E. & Holmes, L. The formation and evolution of protostellar discs; three-dimensional adaptive mesh refinement hydrosimulations of collapsing, rotating Bonnor-Ebert spheres 2004 Monthly Notices of the RAS
    Vol. 355, pp. 248-272 
    article DOI  
    BibTeX:
    @article{Banerjee2004,
      author = {Banerjee, R. and Pudritz, R.~E. and Holmes, L.},
      title = {The formation and evolution of protostellar discs; three-dimensional adaptive mesh refinement hydrosimulations of collapsing, rotating Bonnor-Ebert spheres},
      journal = {Monthly Notices of the RAS},
      year = {2004},
      volume = {355},
      pages = {248-272},
      doi = {http://dx.doi.org/10.1111/j.1365-2966.2004.08316.x}
    }
    
    Banerjee, R., Sur, S., Federrath, C., Schleicher, D. & Klessen, R. Generation of strong magnetic fields via the small-scale dynamo during the formation of the first stars 2012 Arxiv preprint arXiv:1202.4536  article  
    BibTeX:
    @article{banerjee2012generation,
      author = {Banerjee, R. and Sur, S. and Federrath, C. and Schleicher, D.R.G. and Klessen, R.S.},
      title = {Generation of strong magnetic fields via the small-scale dynamo during the formation of the first stars},
      journal = {Arxiv preprint arXiv:1202.4536},
      year = {2012}
    }
    
    Banerjee, R., Vazquez-Semadeni, E., Hennebelle, P. & Klessen, R. The early stages of molecular cloud evolution in the magnetised interstellar medium: clump morphology and evolution 2008   article URL 
    Abstract: We study the properties of clumps formed in three-dimensional simulations of converging flows in the magnetised, thermally bistable, warm neutral medium (WNM). Based on these simulations we find: (1) Pockets of cold, dense molecular clumps form through thermal instability in the contact layer of the convergent flow. They are characterised by a sharp density jump at the boundary to the WNM. (2) The clumps grow in mass at roughly constant density by the outward propagation of the sharp transition layer to the WNM and, at later times, by coagulation. (3) The clumps are approximately in pressure equilibrium with their surroundings and are well separated in the early stages of the cloud evolution. They typically have mean densities of n ~ 1000 cm^-3 and temperatures of T ~ 23 K. (4) The clumps internal turbulence is transonic with pressure fluctuations of up to factors of 2 above and below the thermal value of the surrounding WNM. (5) The velocity and magnetic fields tend to be aligned with each other within the clumps, although both are significantly fluctuating, suggesting that the velocity tends to stretch and align the magnetic field with it. We conclude that thermal instability is responsible for the large density contrast between clumps and WNM, while turbulent ram pressure fluctuations together with gravity are responsible for the internal substructure of the clumps. In the final stages of the evolution mergers drive clumps into the gravitationally unstable regime and consequently star formation sets in.
    BibTeX:
    @article{Banerjee2008,
      author = {Banerjee, Robi and Vazquez-Semadeni, Enrique and Hennebelle, Patrick and Klessen, Ralf},
      title = {The early stages of molecular cloud evolution in the magnetised interstellar medium: clump morphology and evolution},
      year = {2008},
      url = {http://arxiv.org/abs/0808.0986}
    }
    
    Banerjee, R., Vázquez-Semadeni, E., Hennebelle, P. & Klessen, R.S. Clump morphology and evolution in MHD simulations of molecular cloud formation 2009 Monthly Notices of the RAS
    Vol. 398, pp. 1082-1092 
    article DOI  
    BibTeX:
    @article{Banerjee2009b,
      author = {Banerjee, R. and Vázquez-Semadeni, E. and Hennebelle, P. and Klessen, R.~S.},
      title = {Clump morphology and evolution in MHD simulations of molecular cloud formation},
      journal = {Monthly Notices of the RAS},
      year = {2009},
      volume = {398},
      pages = {1082-1092},
      doi = {http://dx.doi.org/10.1111/j.1365-2966.2009.15115.x}
    }
    
    Basili, V.R., Cruzes, D., Carver, J.C., Hochstein, L.M., Hollingsworth, J.K., Zelkowitz, M.V. & Shull, F. Understanding the high-performance-computing community: A software engineer's perspective 2008   article  
    BibTeX:
    @article{Basili2008,
      author = {Basili, V. R. and Cruzes, D. and Carver, J. C. and Hochstein, L. M. and Hollingsworth, J. K. and Zelkowitz, M. V. and Shull, F.},
      title = {Understanding the high-performance-computing community: A software engineer's perspective},
      year = {2008}
    }
    
    Becciani, U., Antonuccio-Delogu, V. & Comparato, M. FLY: MPI-2 high resolution code for LSS cosmological simulations 2007 Computer Physics Communications
    Vol. 176, pp. 211-217 
    article DOI  
    BibTeX:
    @article{Becciani2007,
      author = {Becciani, U. and Antonuccio-Delogu, V. and Comparato, M.},
      title = {FLY: MPI-2 high resolution code for LSS cosmological simulations},
      journal = {Computer Physics Communications},
      year = {2007},
      volume = {176},
      pages = {211-217},
      doi = {http://dx.doi.org/10.1016/j.cpc.2006.10.001}
    }
    
    Beckman, P.H. Building the TeraGrid 2005 Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences
    Vol. 363(1833), pp. 1715-1728 
    article  
    BibTeX:
    @article{Beckman2005,
      author = {Beckman, P. H.},
      title = {Building the TeraGrid},
      journal = {Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences},
      publisher = {The Royal Society},
      year = {2005},
      volume = {363},
      number = {1833},
      pages = {1715--1728}
    }
    
    Bell, J.B., Day, M.S., Rendleman, C.A., Woosley, S.E. & Zingale, M.A. Adaptive low Mach number simulations of nuclear flame microphysics 2004 Journal of Computational Physics
    Vol. 195, pp. 677-694 
    article DOI  
    BibTeX:
    @article{Bell2004,
      author = {Bell, J.~B. and Day, M.~S. and Rendleman, C.~A. and Woosley, S.~E. and Zingale, M.~A.},
      title = {Adaptive low Mach number simulations of nuclear flame microphysics},
      journal = {Journal of Computational Physics},
      year = {2004},
      volume = {195},
      pages = {677-694},
      doi = {http://dx.doi.org/10.1016/j.jcp.2003.10.035}
    }
    
    Benzi, R., Biferale, L., Fisher, R., Kadanoff, L., Lamb, D. & Toschi, F. Intermittency and Universality in Fully-Developed Inviscid and Weakly-Compressible Turbulent Flows 2008 Physical Review Letters
    Vol. 100, pp. 24503 
    article DOI  
    BibTeX:
    @article{Benzi2008,
      author = {Benzi, R. and Biferale, L. and Fisher, R. and Kadanoff, L. and Lamb, D. and Toschi, F.},
      title = {Intermittency and Universality in Fully-Developed Inviscid and Weakly-Compressible Turbulent Flows},
      journal = {Physical Review Letters},
      year = {2008},
      volume = {100},
      pages = {24503},
      doi = {http://dx.doi.org/10.1103/PhysRevLett.100.234503}
    }
    
    Bernal, C., Lee, W. & Page, D. Hypercritical accretion onto a magnetized neutron star surface: a numerical approach 2010 Arxiv preprint arXiv:1006.3003  article  
    BibTeX:
    @article{bernal2010hypercritical,
      author = {Bernal, C.G. and Lee, W.H. and Page, D.},
      title = {Hypercritical accretion onto a magnetized neutron star surface: a numerical approach},
      journal = {Arxiv preprint arXiv:1006.3003},
      year = {2010}
    }
    
    Bernal, C.G., Page, D. & Lee, W.H. Hypercritical Accretion onto a Newborn Neutron Star and Magnetic Field Submergence 2013 The Astrophysical Journal
    Vol. 770(2), pp. 106 
    article  
    BibTeX:
    @article{bernal2013hypercritical,
      author = {Bernal, Cristian G and Page, Dany and Lee, William H},
      title = {Hypercritical Accretion onto a Newborn Neutron Star and Magnetic Field Submergence},
      journal = {The Astrophysical Journal},
      publisher = {IOP Publishing},
      year = {2013},
      volume = {770},
      number = {2},
      pages = {106}
    }
    
    Bernstein, J.P. & Hughes, P.A. Refining a relativistic, hydrodynamic solver: Admitting ultra-relativistic flows 2009 Journal of Computational Physics
    Vol. 228(17), pp. 6212 - 6230 
    article DOI URL 
    Abstract: We have undertaken the simulation of hydrodynamic flows with bulk Lorentz factors in the range 102-106. We discuss the application of an existing relativistic, hydrodynamic primitive variable recovery algorithm to a study of pulsar winds, and, in particular, the refinement made to admit such ultra-relativistic flows. We show that an iterative quartic root finder breaks down for Lorentz factors above 102 and employ an analytic root finder as a solution. We find that the former, which is known to be robust for Lorentz factors up to at least 50, offers a 24% speed advantage. We demonstrate the existence of a simple diagnostic allowing for a hybrid primitives recovery algorithm that includes an automatic, real-time toggle between the iterative and analytical methods. We further determine the accuracy of the iterative and hybrid algorithms for a comprehensive selection of input parameters and demonstrate the latter's capability to elucidate the internal structure of ultra-relativistic plasmas. In particular, we discuss simulations showing that the interaction of a light, ultra-relativistic pulsar wind with a slow, dense ambient medium can give rise to asymmetry reminiscent of the Guitar nebula leading to the formation of a relativistic backflow harboring a series of internal shockwaves. The shockwaves provide thermalized energy that is available for the continued inflation of the PWN bubble. In turn, the bubble enhances the asymmetry, thereby providing positive feedback to the backflow.
    BibTeX:
    @article{Bernstein2009,
      author = {J. P. Bernstein and P. A. Hughes},
      title = {Refining a relativistic, hydrodynamic solver: Admitting ultra-relativistic flows},
      journal = {Journal of Computational Physics},
      year = {2009},
      volume = {228},
      number = {17},
      pages = {6212 - 6230},
      url = {http://www.sciencedirect.com/science/article/B6WHY-4W9XG9X-5/2/585720556b4da1c72d8fa096ba20b4e0},
      doi = {http://dx.doi.org/10.1016/j.jcp.2009.05.012}
    }
    
    Bernstein, J.P. Probing the depths: Relativistic, hydrodynamic simulations and X-ray observations of pulsar wind nebulae 2008 School: University of Michigan  phdthesis  
    BibTeX:
    @phdthesis{Bernstein2008,
      author = {Bernstein, J.~P.},
      title = {Probing the depths: Relativistic, hydrodynamic simulations and X-ray observations of pulsar wind nebulae},
      school = {University of Michigan},
      year = {2008}
    }
    
    Bertram, E., Federrath, C., Banerjee, R. & Klessen, R.S. Statistical analysis of the mass-to-flux ratio in turbulent cores: effects of magnetic field reversals and dynamo amplification 2012 Monthly Notices of the RAS
    Vol. 420, pp. 3163-3173 
    article DOI  
    BibTeX:
    @article{2012MNRAS.420.3163B,
      author = {Bertram, E. and Federrath, C. and Banerjee, R. and Klessen, R.~S. },
      title = {Statistical analysis of the mass-to-flux ratio in turbulent cores: effects of magnetic field reversals and dynamo amplification},
      journal = {Monthly Notices of the RAS},
      year = {2012},
      volume = {420},
      pages = {3163-3173},
      doi = {http://dx.doi.org/10.1111/j.1365-2966.2011.20244.x}
    }
    
    Biferale, L., Lanotte, A.S. & Toschi, F. Statistical behaviour of isotropic and anisotropic fluctuations in homogeneous turbulence 2008 Physica D: Nonlinear Phenomena
    Vol. 237(14-17), pp. 1969 - 1975 
    article DOI URL 
    BibTeX:
    @article{Biferale2008,
      author = {Luca Biferale and Alessandra S. Lanotte and Federico Toschi},
      title = {Statistical behaviour of isotropic and anisotropic fluctuations in homogeneous turbulence},
      journal = {Physica D: Nonlinear Phenomena},
      year = {2008},
      volume = {237},
      number = {14-17},
      pages = {1969 - 1975},
      note = {Euler Equations: 250 Years On - Proceedings of an international conference},
      url = {http://www.sciencedirect.com/science/article/B6TVK-4RV7Y73-2/2/8901bc9b58ef42f681db11497df78270},
      doi = {http://dx.doi.org/10.1016/j.physd.2008.02.008}
    }
    
    Bigler, J., Stephens, A. & Parker, S.G. Design for Parallel Interactive Ray Tracing Systems 2006 IEEE Symposium on Interactive Ray Tracing 2006, pp. 187-196  conference  
    BibTeX:
    @conference{Bigler2006,
      author = {Bigler, J. and Stephens, A. and Parker, S. G.},
      title = {Design for Parallel Interactive Ray Tracing Systems},
      booktitle = {IEEE Symposium on Interactive Ray Tracing 2006},
      year = {2006},
      pages = {187--196}
    }
    
    Blas, G. & Javier, F. A multi-tier cached I/O architecture for massively parallel supercomputers 2010   article  
    BibTeX:
    @article{blas2010multi,
      author = {Blas, G. and Javier, F.},
      title = {A multi-tier cached I/O architecture for massively parallel supercomputers},
      year = {2010}
    }
    
    Bocchino, F., Orlando, S., Miceli, M. & Petruk, O. Constraints on the local interstellar magnetic field from non-thermal emission of SN1006 2011 Astronomy and Astrophysics
    Vol. 531, pp. A129 
    article DOI  
    BibTeX:
    @article{2011A&A...531A.129B,
      author = {Bocchino, F. and Orlando, S. and Miceli, M. and Petruk, O. },
      title = {Constraints on the local interstellar magnetic field from non-thermal emission of SN1006},
      journal = {Astronomy and Astrophysics},
      year = {2011},
      volume = {531},
      pages = {A129},
      doi = {http://dx.doi.org/10.1051/0004-6361/201016341}
    }
    
    Bodo, G., Zanni, C., Ferrari, A. & Massaglia, S. MHD Simulations of Jet Acceleration: The Role of Disk Resistivity 2007 Proceedings of the Workshop: Collective Phenomena in Macroscopic Systems, pp. 187  inproceedings  
    BibTeX:
    @inproceedings{Bodo2007,
      author = {Bodo, G. and Zanni, C. and Ferrari, A. and Massaglia, S.},
      title = {MHD Simulations of Jet Acceleration: The Role of Disk Resistivity},
      booktitle = {Proceedings of the Workshop: Collective Phenomena in Macroscopic Systems},
      year = {2007},
      pages = {187}
    }
    
    Bodo, G., Zanni, C., Massaglia, S., Ferrari, A. & Rossi, P. Adaptive Mesh Refinment simulations of jet formation 2004 Memorie della Societa Astronomica Italiana Supplement
    Vol. 4, pp. 9-+ 
    article  
    BibTeX:
    @article{Bodo2004,
      author = {Bodo, G. and Zanni, C. and Massaglia, S. and Ferrari, A. and Rossi, P.},
      title = {Adaptive Mesh Refinment simulations of jet formation},
      journal = {Memorie della Societa Astronomica Italiana Supplement},
      year = {2004},
      volume = {4},
      pages = {9-+}
    }
    
    Bonito, R., Orlando, S., Peres, G., Favata, F. & Eislöffel, J. The Complex Morphology of the X-ray and Optical Emission from HH 154: The Pulsed Jet Scenario 2009 Protostellar Jets in Context, pp. 353-358  article  
    BibTeX:
    @article{bonito2009complex,
      author = {Bonito, R. and Orlando, S. and Peres, G. and Favata, F. and Eislöffel, J.},
      title = {The Complex Morphology of the X-ray and Optical Emission from HH 154: The Pulsed Jet Scenario},
      journal = {Protostellar Jets in Context},
      publisher = {Springer},
      year = {2009},
      pages = {353--358}
    }
    
    Bonito, R., Orlando, S., Miceli, M., Eislöffel, J., Peres, G. & Favata, F. Generation of radiative knots in a randomly pulsed protostellar jet. II. X-ray emission 2010 Astronomy and Astrophysics
    Vol. 517, pp. A68 
    article DOI  
    BibTeX:
    @article{2010A&A...517A..68B;,
      author = {Bonito, R. and Orlando, S. and Miceli, M. and Eislöffel, J. and Peres, G. and Favata, F.},
      title = {Generation of radiative knots in a randomly pulsed protostellar jet. II. X-ray emission},
      journal = {Astronomy and Astrophysics},
      year = {2010},
      volume = {517},
      pages = {A68},
      doi = {http://dx.doi.org/10.1051/0004-6361/201014723}
    }
    
    Bonito, R., Orlando, S., Miceli, M., Peres, G., Micela, G. & Favata, F. X-Ray Emission from Protostellar Jet HH 154: The First Evidence of a Diamond Shock? 2011 The Astrophysical Journal
    Vol. 737, pp. 54 
    article DOI  
    BibTeX:
    @article{2011ApJ...737...54B,
      author = {Bonito, R. and Orlando, S. and Miceli, M. and Peres, G. and Micela, G. and Favata, F.},
      title = {X-Ray Emission from Protostellar Jet HH 154: The First Evidence of a Diamond Shock?},
      journal = {The Astrophysical Journal},
      year = {2011},
      volume = {737},
      pages = {54},
      doi = {http://dx.doi.org/10.1088/0004-637X/737/2/54}
    }
    
    Bonito, R., Orlando, S., Peres, G., Eislöffel, J., Miceli, M. & Favata, F. Generation of radiative knots in a randomly pulsed protostellar jet. I. Dynamics and energetics 2010 Astronomy and Astrophysics
    Vol. 511, pp. A42 
    article DOI  
    BibTeX:
    @article{2010A&A...511A..42B,
      author = {Bonito, R. and Orlando, S. and Peres, G. and Eislöffel, J. and Miceli, M. and Favata, F.},
      title = {Generation of radiative knots in a randomly pulsed protostellar jet. I. Dynamics and energetics},
      journal = {Astronomy and Astrophysics},
      year = {2010},
      volume = {511},
      pages = {A42},
      doi = {http://dx.doi.org/10.1051/0004-6361/200913595}
    }
    
    Bonito, R., Orlando, S., Peres, G., Favata, F. & Rosner, R. X-rays from protostellar jets: Emission from continuous flows 2007 Astronomy and Astrophysics
    Vol. 462, pp. 645-656 
    article DOI  
    BibTeX:
    @article{Bonito2007,
      author = {Bonito, R. and Orlando, S. and Peres, G. and Favata, F. and Rosner, R.},
      title = {X-rays from protostellar jets: Emission from continuous flows},
      journal = {Astronomy and Astrophysics},
      year = {2007},
      volume = {462},
      pages = {645-656},
      doi = {http://dx.doi.org/10.1051/0004-6361:20065236}
    }
    
    Bonito, R., Orlando, S., Peres, G., Favata, F. & Rosner, R. X-ray Emission Mechanisms in Herbig - Haro objects . 2006 Memorie della Societa Astronomica Italiana Supplement
    Vol. 9, pp. 226-+ 
    article  
    BibTeX:
    @article{Bonito2006,
      author = {Bonito, R. and Orlando, S. and Peres, G. and Favata, F. and Rosner, R.},
      title = {X-ray Emission Mechanisms in Herbig - Haro objects .},
      journal = {Memorie della Societa Astronomica Italiana Supplement},
      year = {2006},
      volume = {9},
      pages = {226-+}
    }
    
    Bonito, R., Orlando, S., Peres, G., Favata, F. & Rosner, R. The X-ray emission mechanism in the protostellar jet HH 154 2004 Astronomy and Astrophysics
    Vol. 424, pp. L1-L4 
    article DOI  
    BibTeX:
    @article{Bonito2004,
      author = {Bonito, R. and Orlando, S. and Peres, G. and Favata, F. and Rosner, R.},
      title = {The X-ray emission mechanism in the protostellar jet HH 154},
      journal = {Astronomy and Astrophysics},
      year = {2004},
      volume = {424},
      pages = {L1-L4},
      doi = {http://dx.doi.org/10.1051/0004-6361:200400014}
    }
    
    Boss, A. & Keiser, S. Supernova-Triggered Molecular Cloud Core Collapse and the Rayleigh-Taylor Fingers that Polluted the Solar Nebula 2012 The Astrophysical Journal Letters
    Vol. 756(1), pp. L9 
    article  
    BibTeX:
    @article{boss2012supernova,
      author = {Boss, A.P. and Keiser, S.A.},
      title = {Supernova-Triggered Molecular Cloud Core Collapse and the Rayleigh-Taylor Fingers that Polluted the Solar Nebula},
      journal = {The Astrophysical Journal Letters},
      publisher = {IOP Publishing},
      year = {2012},
      volume = {756},
      number = {1},
      pages = {L9}
    }
    
    Boss, A.P. & Keiser, S.A. Triggering Collapse of the Presolar Dense Cloud Core and Injecting Short-Lived Radioisotopes with a Shock Wave. II. Varied Shock Wave and Cloud Core Parameters 2013 The Astrophysical Journal
    Vol. 770(1), pp. 51 
    article  
    BibTeX:
    @article{boss2013triggering,
      author = {Boss, Alan P and Keiser, Sandra A},
      title = {Triggering Collapse of the Presolar Dense Cloud Core and Injecting Short-Lived Radioisotopes with a Shock Wave. II. Varied Shock Wave and Cloud Core Parameters},
      journal = {The Astrophysical Journal},
      publisher = {IOP Publishing},
      year = {2013},
      volume = {770},
      number = {1},
      pages = {51}
    }
    
    Boss, A.P., Ipatov, S.I., Keiser, S.A., Myhill, E.A. & Vanhala, H.A.T. Simultaneous Triggered Collapse of the Presolar Dense Cloud Core and Injection of Short-Lived Radioisotopes by a Supernova Shock Wave 2008 Astrophysical Journal, Letters
    Vol. 686, pp. L119-L122 
    article DOI  
    BibTeX:
    @article{Boss2008,
      author = {Boss, A.~P. and Ipatov, S.~I. and Keiser, S.~A. and Myhill, E.~A. and Vanhala, H.~A.~T.},
      title = {Simultaneous Triggered Collapse of the Presolar Dense Cloud Core and Injection of Short-Lived Radioisotopes by a Supernova Shock Wave},
      journal = {Astrophysical Journal, Letters},
      year = {2008},
      volume = {686},
      pages = {L119-L122},
      note = {Astrophysical Journal Letters (in press)},
      doi = {http://dx.doi.org/10.1086/593057}
    }
    
    Boss, A.P., Keiser, S.A., Ipatov, S.I., Myhill, E.A. & Vanhala, H.A.T. Triggering Collapse of the Presolar Dense Cloud Core and Injecting Short-lived Radioisotopes with a Shock Wave. I. Varied Shock Speeds 2010 Astrophysical Journal
    Vol. 708, pp. 1268-1280 
    article DOI  
    BibTeX:
    @article{Boss2010,
      author = {Boss, A.~P. and Keiser, S.~A. and Ipatov, S.~I. and Myhill, E.~A. and Vanhala, H.~A.~T.},
      title = {Triggering Collapse of the Presolar Dense Cloud Core and Injecting Short-lived Radioisotopes with a Shock Wave. I. Varied Shock Speeds},
      journal = {Astrophysical Journal},
      year = {2010},
      volume = {708},
      pages = {1268-1280},
      doi = {http://dx.doi.org/10.1088/0004-637X/708/2/1268}
    }
    
    Brown, E.F., Timmes, F.X. & Truran, J.W. Progenitor Metallicity and Type la Supernova Peak Luminosity Variance 2004 Proceeding's of the 12th Ringberg Workshop on Nuclear Astrophysics  inproceedings  
    BibTeX:
    @inproceedings{Brown2004,
      author = {Brown, E. F. and Timmes, F. X. and Truran, J. W.},
      title = {Progenitor Metallicity and Type la Supernova Peak Luminosity Variance},
      booktitle = {Proceeding's of the 12th Ringberg Workshop on Nuclear Astrophysics},
      publisher = {Garching: Max-Planck-Institut fuer Astrophysik},
      year = {2004}
    }
    
    Brown, E.F., Calder, A.C., Plewa, T., Ricker, P.M., Robinson, K. & Gallagher, J.B. Type Ia Supernovae: Simulations and Nucleosynthesis 2005 Nuclear Physics A
    Vol. 758, pp. 451-454 
    article DOI  
    BibTeX:
    @article{Brown2005,
      author = {Brown, E.~F. and Calder, A.~C. and Plewa, T. and Ricker, P.~M. and Robinson, K. and Gallagher, J.~B.},
      title = {Type Ia Supernovae: Simulations and Nucleosynthesis},
      journal = {Nuclear Physics A},
      year = {2005},
      volume = {758},
      pages = {451-454},
      doi = {http://dx.doi.org/10.1016/j.nuclphysa.2005.05.083}
    }
    
    Brumfiel, G. Nuclear weapons: The next nuke 2006   article  
    BibTeX:
    @article{Brumfiel2006,
      author = {Brumfiel, G.},
      title = {Nuclear weapons: The next nuke},
      publisher = {Nature Publishing Group},
      year = {2006}
    }
    
    Brunt, C.M., Federrath, C. & Price, D.J. A method for reconstructing the variance of a 3D physical field from 2D observations: application to turbulence in the interstellar medium 2010 Monthly Notices of the RAS
    Vol. 403, pp. 1507-1515 
    article DOI  
    BibTeX:
    @article{2010MNRAS.403.1507B,
      author = {Brunt, C.~M. and Federrath, C. and Price, D.~J.},
      title = {A method for reconstructing the variance of a 3D physical field from 2D observations: application to turbulence in the interstellar medium},
      journal = {Monthly Notices of the RAS},
      year = {2010},
      volume = {403},
      pages = {1507-1515},
      doi = {http://dx.doi.org/10.1111/j.1365-2966.2009.16215.x}
    }
    
    Brunt, C.M., Federrath, C. & Price, D.J. A method for reconstructing the PDF of a 3D turbulent density field from 2D observations 2010 Monthly Notices of the RAS
    Vol. 405, pp. L56-L60 
    article DOI  
    BibTeX:
    @article{2010MNRAS.405L..56B,
      author = {Brunt, C.~M. and Federrath, C. and Price, D.~J.},
      title = {A method for reconstructing the PDF of a 3D turbulent density field from 2D observations},
      journal = {Monthly Notices of the RAS},
      year = {2010},
      volume = {405},
      pages = {L56-L60},
      doi = {http://dx.doi.org/10.1111/j.1745-3933.2010.00858.x}
    }
    
    Brüggen, M. Simulations of Buoyant Bubbles in Galaxy Clusters 2003 Astrophysical Journal
    Vol. 592, pp. 839-845 
    article DOI  
    BibTeX:
    @article{Bruggen2003,
      author = {Brüggen, M.},
      title = {Simulations of Buoyant Bubbles in Galaxy Clusters},
      journal = {Astrophysical Journal},
      year = {2003},
      volume = {592},
      pages = {839-845},
      doi = {http://dx.doi.org/10.1086/375731}
    }
    
    Brüggen, M., Heinz, S., Roediger, E., Ruszkowski, M. & Simionescu, A. Shock heating by Fanaroff-Riley type I radio sources in galaxy clusters 2007 Monthly Notices of the RAS
    Vol. 380(1), pp. L67-L70 
    article  
    BibTeX:
    @article{Brueggen2007,
      author = {Brüggen, M. and Heinz, S. and Roediger, E. and Ruszkowski, M. and Simionescu, A.},
      title = {Shock heating by Fanaroff-Riley type I radio sources in galaxy clusters},
      journal = {Monthly Notices of the RAS},
      year = {2007},
      volume = {380},
      number = {1},
      pages = {L67--L70}
    }
    
    Brüggen, M. & Hoeft, M. Simulations of magnetic fields in the cosmos 2006 Astronomische Nachrichten
    Vol. 327, pp. 587-+ 
    article DOI  
    BibTeX:
    @article{Bruggen2006,
      author = {Brüggen, M. and Hoeft, M.},
      title = {Simulations of magnetic fields in the cosmos},
      journal = {Astronomische Nachrichten},
      year = {2006},
      volume = {327},
      pages = {587-+},
      doi = {http://dx.doi.org/10.1002/asna.200610597}
    }
    
    Brüggen, M. & Kaiser, C.R. Hot bubbles from active galactic nuclei as a heat source in cooling-flow clusters 2002 Nature
    Vol. 418, pp. 301-303 
    article  
    BibTeX:
    @article{Bruggen2002,
      author = {Brüggen, M. and Kaiser, C.~R.},
      title = {Hot bubbles from active galactic nuclei as a heat source in cooling-flow clusters},
      journal = {Nature},
      year = {2002},
      volume = {418},
      pages = {301-303}
    }
    
    Brüggen, M., Ruszkowski, M., Simionescu, A. & Hoeft, M. Simulations of magnetic fields in clusters and filaments 2009
    Vol. 36Revista Mexicana de Astronomia y Astrofisica Conference Series, pp. 216-221 
    article  
    Abstract: The origin of cosmic magnetic fields outside of galaxies remains controversial. In the intracluster medium field strengths of the order of muG have been reported. Possibly the outflows of AGN have magnetised the ICM. The intergalactic magnetic field within filaments should be less polluted by magnetised outflows from active galaxies than magnetic fields in clusters. Therefore, filaments may be a better laboratory to study magnetic field amplification by structure formation than galaxy clusters, since they host less active galaxies. Moreover, filaments are thought to contain the Warm-Hot Intergalactic Medium which represents a large fraction of the baryonic matter in the universe. Diffuse synchrotron emission by cosmic rays in these filaments will reveal the presence of this medium. We present highly resolved cosmological adaptive mesh refinement simulations of magnetic fields in the cosmos and make predictions about the evolution and structure of magnetic fields in filaments. Magnetic fields in clusters may also have their origin in AGN, whose evolution, in turn, is strongly affected by magnetic fields. We show how the dynamics of AGN-blown bubbles, that are vital for feedback mechanisms in clusters and galaxies, is governed by ambient magnetic fields that are effective at suppressing hydrodynamic instabilities.
    BibTeX:
    @article{brueggen2009simulations,
      author = {Brüggen, M. and Ruszkowski, M. and Simionescu, A. and Hoeft, M.},
      title = {Simulations of magnetic fields in clusters and filaments},
      booktitle = {Revista Mexicana de Astronomia y Astrofisica Conference Series},
      year = {2009},
      volume = {36},
      pages = {216-221}
    }
    
    Brüggen, M. & Ruszkowski, M. Viscosity in cosmological simulations of clusters of galaxies 2005 Astrophysical Journal, submitted  article URL 
    Abstract: The physics of the intracluster medium, in particular the values for the thermal conductivity and the viscosity are largely unknown and subject to an ongoing debate. Here, we study the effect of viscosity on the thermal state of the intracluster medium using three-dimensional cosmological simulations of structure formation. It is shown that viscosity, provided it is not too far off from the unmagnetised Spitzer value, has a significant effect on cluster profiles. In particular, it aids in heating the cool cores of clusters. The central cooling time of the most massive clusters in our simulation is increased by more than an order of magnitude. In large clusters, viscous heating may help to establish an entropy floor and to prevent a cooling catastrophe.
    BibTeX:
    @article{Bruggen2005,
      author = {Brüggen, M. and Ruszkowski, M.},
      title = {Viscosity in cosmological simulations of clusters of galaxies},
      journal = {Astrophysical Journal, submitted},
      year = {2005},
      url = {http://arxiv.org/abs/astro-ph/0512148}
    }
    
    Brüggen, M., Ruszkowski, M. & Hallman, E. Active Galactic Nuclei Heating and Dissipative Processes in Galaxy Clusters 2005 Astrophysical Journal
    Vol. 630, pp. 740-749 
    article DOI  
    BibTeX:
    @article{Bruggen2005a,
      author = {Brüggen, M. and Ruszkowski, M. and Hallman, E.},
      title = {Active Galactic Nuclei Heating and Dissipative Processes in Galaxy Clusters},
      journal = {Astrophysical Journal},
      year = {2005},
      volume = {630},
      pages = {740-749},
      doi = {http://dx.doi.org/10.1086/432112}
    }
    
    Brüggen, M., Ruszkowski, M., Simionescu, A., Hoeft, M. & Dalla Vecchia, C. Simulations of Magnetic Fields in Filaments 2005 Astrophysical Journal, Letters
    Vol. 631, pp. L21-L24 
    article DOI  
    BibTeX:
    @article{Bruggen2005b,
      author = {Brüggen, M. and Ruszkowski, M. and Simionescu, A. and Hoeft, M. and Dalla Vecchia, C.},
      title = {Simulations of Magnetic Fields in Filaments},
      journal = {Astrophysical Journal, Letters},
      year = {2005},
      volume = {631},
      pages = {L21-L24},
      doi = {http://dx.doi.org/10.1086/497004}
    }
    
    Brüggen, M., Scannapieco, E. & Heinz, S. Evolution of X-ray cavities 2009 Monthly Notices of the Royal Astronomical Society
    Vol. 395(4), pp. 2210-2220 
    article  
    BibTeX:
    @article{brueggen2009evolution,
      author = {Brüggen, M. and Scannapieco, E. and Heinz, S.},
      title = {Evolution of X-ray cavities},
      journal = {Monthly Notices of the Royal Astronomical Society},
      publisher = {Wiley Online Library},
      year = {2009},
      volume = {395},
      number = {4},
      pages = {2210--2220}
    }
    
    Brüggen, M. & Scannapieco, E. Self-Regulation of AGN in Galaxy Clusters 2009 ArXiv e-prints  article  
    BibTeX:
    @article{Brueggen2009,
      author = {Brüggen, M. and Scannapieco, E.},
      title = {Self-Regulation of AGN in Galaxy Clusters},
      journal = {ArXiv e-prints},
      year = {2009}
    }
    
    Brüggen, M., van Weeren, R. & Rottgering, H. Magnetic fields and shock waves in cluster outskirts 2011 arXiv preprint arXiv:1102.1926  article  
    BibTeX:
    @article{bruggen2011magnetic,
      author = {Brüggen, M. and van Weeren, RJ and Rottgering, HJA},
      title = {Magnetic fields and shock waves in cluster outskirts},
      journal = {arXiv preprint arXiv:1102.1926},
      year = {2011}
    }
    
    Brüggen, M., van Weeren, R. & Röttgering, H. Simulating the toothbrush: evidence for a triple merger of galaxy clusters 2012 Monthly Notices of the Royal Astronomical Society: Letters  article  
    BibTeX:
    @article{bruggen2012simulating,
      author = {Brüggen, M. and van Weeren, RJ and Röttgering, HJA},
      title = {Simulating the toothbrush: evidence for a triple merger of galaxy clusters},
      journal = {Monthly Notices of the Royal Astronomical Society: Letters},
      publisher = {Wiley Online Library},
      year = {2012}
    }
    
    Budde, A., Drake, R.P., Kuranz, C., Grosskopf, M., Plewa, T. & Hearn, N. Simulation of fabrication variations in supernova hydrodynamics experiments 2010 High Energy Density Physics
    Vol. 6(2), pp. 135-142 
    article  
    BibTeX:
    @article{budde2010simulation,
      author = {Budde, A. and Drake, R. Paul and Kuranz, CC and Grosskopf, MJ and Plewa, T. and Hearn, NC},
      title = {Simulation of fabrication variations in supernova hydrodynamics experiments},
      journal = {High Energy Density Physics},
      publisher = {Elsevier},
      year = {2010},
      volume = {6},
      number = {2},
      pages = {135--142}
    }
    
    Byna, S., Chen, Y., Sun, X.-H., Thakur, R. & Gropp, W. Parallel I/O prefetching using MPI file caching and I/O signatures 2008 SC '08: Proceedings of the 2008 ACM/IEEE conference on Supercomputing, pp. 1-12  inproceedings  
    BibTeX:
    @inproceedings{Byna2008,
      author = {Byna, Surendra and Chen, Yong and Sun, Xian-He and Thakur, Rajeev and Gropp, William},
      title = {Parallel I/O prefetching using MPI file caching and I/O signatures},
      booktitle = {SC '08: Proceedings of the 2008 ACM/IEEE conference on Supercomputing},
      publisher = {IEEE Press},
      year = {2008},
      pages = {1--12}
    }
    
    Bürzle, F., Clark, P., Stasyszyn, F., Greif, T., Dolag, K., Klessen, R. & Nielaba, P. Protostellar collapse and fragmentation using an MHD GADGET 2011 Monthly Notices of the Royal Astronomical Society
    Vol. 412(1), pp. 171-186 
    article  
    BibTeX:
    @article{buerzle2011protostellar,
      author = {Bürzle, F. and Clark, P.C. and Stasyszyn, F. and Greif, T. and Dolag, K. and Klessen, R.S. and Nielaba, P.},
      title = {Protostellar collapse and fragmentation using an MHD GADGET},
      journal = {Monthly Notices of the Royal Astronomical Society},
      publisher = {Wiley Online Library},
      year = {2011},
      volume = {412},
      number = {1},
      pages = {171--186}
    }
    
    Børve, S., Speith, R. & Trulsen, J. NUMERICAL DISSIPATION IN RSPH SIMULATIONS OF ASTROPHYSICAL FLOWS WITH APPLICATION TO PROTOPLANETARY DISKS 2009 The Astrophysical Journal
    Vol. 701(2), pp. 1269 
    article URL 
    Abstract: Smoothed Particle Hydrodynamics (SPH) is widely used for astrophysical applications, in particular problems of self-gravitational hydrodynamics. However, critics have argued that inherent accuracy problems with the method can be identified, in particular when it comes to describing shocks and dynamical instabilities. Regularized Smoothed Particle Hydrodynamics (RSPH) has previously been proposed as an extension to SPH. It is an attempt to increase the accuracy of the hydrodynamical description without having to abandon the Lagrangian formulation altogether. As the name implies, the method relies on a regularization technique where the solution at temporal intervals is mapped on to a new set of regularly placed particles. This technique allows us to reduce the numerical noise otherwise caused by highly irregular particle distributions and to take advantage of a more flexible approach to variable resolution. The cost of introducing the regularization scheme lies in increased methodical complexity, and in increased numerical dissipation. This paper investigates the numerical dissipation both qualitatively and quantitatively in the context of two-dimensional models relevant to the study of protoplanetary disks. Basic hydrodynamical tests highlight key properties of the RSPH approach. By comparison with an analytical solution, we are also able to quantify the dependence of the spurious viscosity on key numerical parameters. To put the theoretical discussion in perspective, we also present results from simulations of test problems involving disk-planet interactions. The results are compared to published results obtained with other codes.
    BibTeX:
    @article{Boerve2009,
      author = {S. Børve and R. Speith and J. Trulsen},
      title = {NUMERICAL DISSIPATION IN RSPH SIMULATIONS OF ASTROPHYSICAL FLOWS WITH APPLICATION TO PROTOPLANETARY DISKS},
      journal = {The Astrophysical Journal},
      year = {2009},
      volume = {701},
      number = {2},
      pages = {1269},
      url = {http://stacks.iop.org/0004-637X/701/i=2/a=1269}
    }
    
    Calder, A., Alexakis, A., Heger, A., Brown, E., Dursi, L.J., Truran, J., Rosner, R. & Jose, J. Breaking Gravity Waves: A Mechanisms for Nova Enrichment 2004 Proceedings of the 12th Ringberg Workshop on Nuclear Astrophysics  inproceedings  
    BibTeX:
    @inproceedings{Calder2004a,
      author = {Calder, A.C. and Alexakis, A. and Heger, A. and Brown, E.F. and Dursi, L. J. and Truran, J.W. and Rosner, R. and Jose, J.},
      title = {Breaking Gravity Waves: A Mechanisms for Nova Enrichment},
      booktitle = {Proceedings of the 12th Ringberg Workshop on Nuclear Astrophysics},
      publisher = {Garching: Max-Planck-Institut fuer Astrophysik},
      year = {2004}
    }
    
    Calder, A., Dursi, J., Fryxell, B., Plewa, T., Weirs, G., Dupont, T., Robey, H., Kane, J., Drake, P., Remington, B., Dimonte, G., Hayes, J., Stone, J., Ricker, P., Timmes, F., Zingale, M. & Olson, K. Validating astrophysical simulation codes 2004 Computing in Science & Engineering
    Vol. 6(5), pp. 10-20 
    article URL 
    BibTeX:
    @article{Calder2004b,
      author = {Calder, A. and Dursi, J. and Fryxell, B. and Plewa, T. and Weirs, G. and Dupont, T. and Robey, H. and Kane, J. and Drake, P. and Remington, B. and Dimonte, G. and Hayes, J. and Stone, J. and Ricker, P. and Timmes, F. and Zingale, M. and Olson, K.},
      title = {Validating astrophysical simulation codes},
      journal = {Computing in Science & Engineering},
      year = {2004},
      volume = {6},
      number = {5},
      pages = {10-20},
      url = {http://ieeexplore.ieee.org/stamp/stamp.jsp?arnumber=1324545&isnumber=29314}
    }
    
    Calder, A., Jackson, A., Krueger, B., Townsley, D., Chamulak, D., Brown, E. & Timmes, F. The Influence of Deflagration to Detonation Transition Density on Type Ia Supernovae 2010   article  
    BibTeX:
    @article{calder2010influence,
      author = {Calder, A.C. and Jackson, A.P. and Krueger, B.K. and Townsley, D.M. and Chamulak, D.A. and Brown, E.F. and Timmes, FX},
      title = {The Influence of Deflagration to Detonation Transition Density on Type Ia Supernovae},
      year = {2010}
    }
    
    Calder, A. & Wang, E. Numerical Models of Binary Neutron Star System Mergers. II. Coalescing Models with Post-Newtonian Radiation Reaction Forces 2002 The Astrophysical Journal
    Vol. 570(1), pp. 303-313 
    article  
    BibTeX:
    @article{Calder2002c,
      author = {Calder, A.C. and Wang, E.Y.M.},
      title = {Numerical Models of Binary Neutron Star System Mergers. II. Coalescing Models with Post-Newtonian Radiation Reaction Forces},
      journal = {The Astrophysical Journal},
      publisher = {UChicago Press},
      year = {2002},
      volume = {570},
      number = {1},
      pages = {303--313}
    }
    
    Calder, A.C. Laboratory Astrophysics Experiments for Simulation Code Validation: A Case Study 2005 Astrophysics and Space Science
    Vol. 298, pp. 25-32 
    article DOI  
    BibTeX:
    @article{Calder2005,
      author = {Calder, A. C.},
      title = {Laboratory Astrophysics Experiments for Simulation Code Validation: A Case Study},
      journal = {Astrophysics and Space Science},
      year = {2005},
      volume = {298},
      pages = {25-32},
      doi = {http://dx.doi.org/10.1007/s10509-005-3908-2}
    }
    
    Calder, A.C., Krueger, B.K., Jackson, A.P. & Townsley, D.M. The influence of chemical composition on models of Type Ia supernovae 2013 Frontiers of Physics
    Vol. 8, pp. 168-188 
    article DOI  
    BibTeX:
    @article{calder2013influence,
      author = {Calder, Alan C. and Krueger, Brendan K. and Jackson, Aaron P. and Townsley, Dean M.},
      title = {The influence of chemical composition on models of Type Ia supernovae},
      journal = {Frontiers of Physics},
      year = {2013},
      volume = {8},
      pages = {168-188},
      doi = {http://dx.doi.org/10.1007/s11467-013-0301-4}
    }
    
    Calder, A.C., Alexakis, A., Dursi, L.J., Rosner, R., Truran, J.W., Fryxell, B., Ricker, P., Zingale, M., Olson, K., Timmes, F.X. & MacNeice, P. Mixing by Non-linear Gravity Wave Breaking on a White Dwarf Surface 2002 AIP Conf. Proc. 637: Classical Nova Explosions, pp. 134-138  inproceedings  
    Abstract: We present the results of a simulation of a wind-driven non-linear gravity wave breaking on the surface of a white dwarf. The ``wind'' consists of H/He from an accreted envelope, and the simulation demonstrates that this breaking wave mechanism can produce a well-mixed layer of H/He with C/O from the white dwarf above the surface. Material from this mixed layer may then be transported throughout the accreted envelope by convection, which would enrich the C/O abundance of the envelope as is expected from observations of novae.
    BibTeX:
    @inproceedings{Calder2002,
      author = {Calder, A.~C. and Alexakis, A. and Dursi, L.~J. and Rosner, R. and Truran, J.~W. and Fryxell, B. and Ricker, P. and Zingale, M. and Olson, K. and Timmes, F.~X. and MacNeice, P.},
      title = {Mixing by Non-linear Gravity Wave Breaking on a White Dwarf Surface},
      booktitle = {AIP Conf. Proc. 637: Classical Nova Explosions},
      year = {2002},
      pages = {134-138}
    }
    
    Calder, A.C., Curtis, B.C., Dursi, L.J., Fryxell, B., Henry, G., MacNeice, P., Olson, K., Ricker, P., Rosner, R., Timmes, F.X., Tufo, H.M., Truran, J.W. & Zingale, M. High-Performance Reactive Fluid Flow Simulations Using Adaptive Mesh Refinement on Thousands of Processors 2000 Supercomputing, ACM/IEEE 2000 Conference  inproceedings  
    Abstract: We present simulations and performance results of nuclear burning fronts in super- novae on the largest domain and at the finest spatial resolution studied to date. These simulations were performed on the Intel ASCI-Red machine at Sandia National Laboratories using FLASH, a code developed at the Center for Astrophysical Thermonuclear Flashes at the University of Chicago. FLASH is a modular, adaptive mesh, parallel simulation code capable of handling compressible, reactive fluid flows in astrophysical environments. FLASH is written primarily in Fortran 90, uses the Message-Passing Interface library for inter-processor communication and portability, and employs the PARAMESH package to manage a block-structured adaptive mesh that places blocks only where resolution is required and tracks rapidly changing flow features, such as detonation fronts, with ease. We describe the key algorithms and their implementation as well as the optimizations required to achieve sustained performance of 238 GFLOPS on 6420 processors of ASCI-Red in 64 bit arithmetic.
    BibTeX:
    @inproceedings{Calder2000,
      author = {Calder, A.~C. and Curtis, B.~C. and Dursi, L.~J. and Fryxell, B. and Henry, G. and MacNeice, P. and Olson, K. and Ricker, P. and Rosner, R. and Timmes, F.~X. and Tufo, H.~M. and Truran, J.~W. and Zingale, M.},
      title = {High-Performance Reactive Fluid Flow Simulations Using Adaptive Mesh Refinement on Thousands of Processors},
      booktitle = {Supercomputing, ACM/IEEE 2000 Conference},
      year = {2000}
    }
    
    Calder, A.C., Fryxell, B., Plewa, T., Rosner, R., Dursi, L.J., Weirs, V.G., Dupont, T., Robey, H.F., Kane, J.O., Remington, B.A., Drake, R.P., Dimonte, G., Zingale, M., Timmes, F.X., Olson, K., Ricker, P., MacNeice, P. & Tufo, H.M. On Validating an Astrophysical Simulation Code 2002 Astrophysical Journal, Supplement
    Vol. 143, pp. 201-229 
    article DOI  
    BibTeX:
    @article{Calder2002a,
      author = {Calder, A.~C. and Fryxell, B. and Plewa, T. and Rosner, R. and Dursi, L.~J. and Weirs, V.~G. and Dupont, T. and Robey, H.~F. and Kane, J.~O. and Remington, B.~A. and Drake, R. Paul and Dimonte, G. and Zingale, M. and Timmes, F.~X. and Olson, K. and Ricker, P. and MacNeice, P. and Tufo, H.~M.},
      title = {On Validating an Astrophysical Simulation Code},
      journal = {Astrophysical Journal, Supplement},
      year = {2002},
      volume = {143},
      pages = {201-229},
      doi = {http://dx.doi.org/10.1086/342267}
    }
    
    Calder, A.C., Fryxell, B., Rosner, R., Dursi, L.J., Olson, K., Ricker, P.M., Timmes, F.X., Zingale, M., MacNeice, P. & Tufo, H.M. Simulations of Astrophysical Fluid Instabilities 2001 AIP Conf. Proc. 586: 20th Texas Symposium on relativistic astrophysics, pp. 484-+  inproceedings  
    BibTeX:
    @inproceedings{Calder2001,
      author = {Calder, A.~C. and Fryxell, B. and Rosner, R. and Dursi, L.~J. and Olson, K. and Ricker, P.~M. and Timmes, F.~X. and Zingale, M. and MacNeice, P. and Tufo, H.~M.},
      title = {Simulations of Astrophysical Fluid Instabilities},
      booktitle = {AIP Conf. Proc. 586: 20th Texas Symposium on relativistic astrophysics},
      year = {2001},
      pages = {484-+}
    }
    
    Calder, A.C., Jackson, A., Krueger, B., Townsley, D.M., Chamulak, D.A., Brown, E.F. & Timmes, F.X. Evaluating Systematic Dependencies of Type Ia Supernovae: The Influence of Deflagration to Detonation Density 2010 11th Symposium on Nuclei in the Cosmos  inproceedings URL 
    BibTeX:
    @inproceedings{2010nuco.confE.251C,
      author = {Calder, A.~C. and Jackson, A. and Krueger, B. and Townsley, D.~M. and Chamulak, D.~A. and Brown, E.~F. and Timmes, F.~X.},
      title = {Evaluating Systematic Dependencies of Type Ia Supernovae: The Influence of Deflagration to Detonation Density},
      booktitle = {11th Symposium on Nuclei in the Cosmos},
      year = {2010},
      note = {PoS(NIC XI)251},
      url = {http://pos.sissa.it/archive/conferences/100/251/NIC%20XI_251.pdf}
    }
    
    Calder, A.C., Jackson, A., Townsley, D., Chamulak, D.A., Brown, E. & Timmes, F.X. Turbulence-Flame Interaction on the Early Evolution of Flames in Type Ia Supernovae 2010 11th Symposium on Nuclei in the Cosmos  inproceedings  
    BibTeX:
    @inproceedings{2010nuco.confE.249C,
      author = {Calder, A.~C. and Jackson, A. and Townsley, D. and Chamulak, D.~A. and Brown, E. and Timmes, F.~X.},
      title = {Turbulence-Flame Interaction on the Early Evolution of Flames in Type Ia Supernovae},
      booktitle = {11th Symposium on Nuclei in the Cosmos},
      year = {2010}
    }
    
    Calder, A.C., Krueger, B.K., Jackson, A.P., Townsley, D.M., Brown, E.F. & Timmes, F.X. On Simulating Type Ia Supernovae 2012 Journal of Physics Conference Series
    Vol. 402(1), pp. 012023 
    article DOI  
    BibTeX:
    @article{2012JPhCS.402a2023C,
      author = {Calder, A.~C. and Krueger, B.~K. and Jackson, A.~P. and Townsley, D.~M. and Brown, E.~F. and Timmes, F.~X.},
      title = {On Simulating Type Ia Supernovae},
      journal = {Journal of Physics Conference Series},
      year = {2012},
      volume = {402},
      number = {1},
      pages = {012023},
      doi = {http://dx.doi.org/10.1088/1742-6596/402/1/012023}
    }
    
    Calder, A.C., Krueger, B.K., Jackson, A.P., Townsley, D.M., Timmes, F.X., Brown, E.F. & Chamulak, D.A. Evaluating Systematic Dependencies of Type Ia Supernovae 2010 ArXiv e-prints  article URL 
    BibTeX:
    @article{2010arXiv1011.4022C,
      author = {Calder, A.~C. and Krueger, B.~K. and Jackson, A.~P. and Townsley, D.~M. and Timmes, F.~X. and Brown, E.~F. and Chamulak, D.~A.},
      title = {Evaluating Systematic Dependencies of Type Ia Supernovae},
      journal = {ArXiv e-prints},
      year = {2010},
      url = {http://arxiv.org/abs/1011.4022}
    }
    
    Calder, A.C., Plewa, T., Vladimirova, N., Lamb, D.Q. & Truran, J.W. Type Ia Supernovae: An Asymmetric Deflagration Model 2004 Astrophysical Journal, Letters, submitted  article URL 
    Abstract: We present the first high-resolution three-dimensional simulations of the deflagration phase of Type Ia supernovae that treat the entire massive white dwarf. We report the results of simulations in which ignition of the nuclear burning occurs slightly off-center. The subsequent evolution of the nuclear burning is surprisingly asymmetric with a growing bubble of hot ash rapidly rising to the stellar surface. Upon reaching the surface, the mass of burned material is $approx 0.075 M_ and the kinetic energy is $4.3 times 10^49$ ergs. The velocity of the top of the rising bubble approaches 8000 km s$^-1$. The amount of the asymmetry found in the model offers a natural explanation for the observed diversity in Type Ia supernovae. Our study strongly disfavors the classic central-ignition pure deflagration scenario by showing that the result is highly sensitive to details of the initial conditions.
    BibTeX:
    @article{Calder2004,
      author = {Calder, A.~C. and Plewa, T. and Vladimirova, N. and Lamb, D.~Q. and Truran, J.~W.},
      title = {Type Ia Supernovae: An Asymmetric Deflagration Model},
      journal = {Astrophysical Journal, Letters, submitted},
      year = {2004},
      url = {http://arxiv.org/abs/astro-ph/0405162}
    }
    
    Calder, A.C., Taylor, N.T., Antypas, K., Sheeler, D. & Dubey, A. A Case Study of Verifying and Validating an Astrophysical Simulation Code 2006
    Vol. 359Numerical Modeling of Space Plasma Flows, pp. 119-+ 
    inproceedings  
    BibTeX:
    @inproceedings{Calder2006,
      author = {Calder, A.~C. and Taylor, N.~T. and Antypas, K. and Sheeler, D. and Dubey, A.},
      title = {A Case Study of Verifying and Validating an Astrophysical Simulation Code},
      booktitle = {Numerical Modeling of Space Plasma Flows},
      year = {2006},
      volume = {359},
      pages = {119-+}
    }
    
    Calder, A.C., Townsley, D.M., Seitenzahl, I.R., Peng, F., Messer, O.E.B., Vladimirova, N., Brown, E.F., Truran, J.W. & Lamb, D.Q. Capturing the Fire: Flame Energetics and Neutronizaton for Type Ia Supernova Simulations 2007 Astrophysical Journal
    Vol. 656, pp. 313-+ 
    article  
    BibTeX:
    @article{Calder2007,
      author = {Calder, A.~C. and Townsley, D.~M. and Seitenzahl, I.~R. and Peng, F. and Messer, O.~E.~B. and Vladimirova, N. and Brown, E.~F. and Truran, J.~W. and Lamb, D.~Q.},
      title = {Capturing the Fire: Flame Energetics and Neutronizaton for Type Ia Supernova Simulations},
      journal = {Astrophysical Journal},
      year = {2007},
      volume = {656},
      pages = {313--+}
    }
    
    Calleja, A. Scripting a Large Fortran Code with Python 2004 IEE Seminar Digests
    Vol. 52 
    article  
    BibTeX:
    @article{Calleja2004,
      author = {Calleja, A.C.},
      title = {Scripting a Large Fortran Code with Python},
      journal = {IEE Seminar Digests},
      publisher = {IEE},
      year = {2004},
      volume = {52}
    }
    
    Camenzind, M. Numerical Magnetohydrodynamics in Astrophysics 2005 Lecture notes in physics
    Vol. 664Cosmic Magnetic Fields, pp. 255-1279 
    incollection  
    BibTeX:
    @incollection{Camenzind2005,
      author = {Camenzind, M.},
      title = {Numerical Magnetohydrodynamics in Astrophysics},
      booktitle = {Cosmic Magnetic Fields},
      journal = {Lecture notes in physics},
      publisher = {Springer},
      year = {2005},
      volume = {664},
      pages = {255--1279}
    }
    
    Cannizzo, J.K., Gehrels, N. & Vishniac, E.T. Glimm's Method for Relativistic Hydrodynamics 2008 The Astrophysical Journal
    Vol. 680, pp. 885-896 
    article DOI  
    BibTeX:
    @article{Cannizzo2008,
      author = {Cannizzo, J.~K. and Gehrels, N. and Vishniac, E.~T.},
      title = {Glimm's Method for Relativistic Hydrodynamics},
      journal = {The Astrophysical Journal},
      year = {2008},
      volume = {680},
      pages = {885-896},
      doi = {http://dx.doi.org/10.1086/587164}
    }
    
    Casanova Bustamante, J. & others Multi-dimensional simulations of mixing in classical novae 2011   article  
    BibTeX:
    @article{casanova2011multi,
      author = {Casanova Bustamante, J. and others},
      title = {Multi-dimensional simulations of mixing in classical novae},
      publisher = {Universitat Politècnica de Catalunya},
      year = {2011}
    }
    
    Casanova, J., Jose, J., Garca-Berro, E., Calder, A.C. & Shore, S.N. On mixing at the core-envelope interface during classical nova outbursts 2010 11th Symposium on Nuclei in the Cosmos  inproceedings  
    BibTeX:
    @inproceedings{2010nuco.confE.204C,
      author = {Casanova, J. and Jose, J. and Garca-Berro, E. and Calder, A.~C. and Shore, S.~N.},
      title = {On mixing at the core-envelope interface during classical nova outbursts},
      booktitle = {11th Symposium on Nuclei in the Cosmos},
      year = {2010}
    }
    
    Casanova, J., José, J., Garca-Berro, E., Calder, A. & Shore, S.N. Mixing in classical novae: a 2-D sensitivity study 2011 aap
    Vol. 527, pp. A5 
    article DOI  
    BibTeX:
    @article{2011A&A...527A...5C,
      author = {Casanova, J. and José, J. and Garca-Berro, E. and Calder, A. and Shore, S.~N.},
      title = {Mixing in classical novae: a 2-D sensitivity study},
      journal = {aap},
      year = {2011},
      volume = {527},
      pages = {A5},
      doi = {http://dx.doi.org/10.1051/0004-6361/201015895}
    }
    
    Casanova, J., José, J., Garca-Berro, E., Calder, A. & Shore, S.N. On mixing at the core-envelope interface during classical nova outbursts 2010 aap
    Vol. 513, pp. L5 
    article DOI  
    BibTeX:
    @article{2010A&A...513L...5C,
      author = {Casanova, J. and José, J. and Garca-Berro, E. and Calder, A. and Shore, S.~N.},
      title = {On mixing at the core-envelope interface during classical nova outbursts},
      journal = {aap},
      year = {2010},
      volume = {513},
      pages = {L5},
      doi = {http://dx.doi.org/10.1051/0004-6361/201014178}
    }
    
    Casanova, J., José, J., Garca-Berro, E., Shore, S.N. & Calder, A.C. Kelvin-Helmholtz instabilities as the source of inhomogeneous mixing in nova explosions 2011 nat
    Vol. 478, pp. 490-492 
    article DOI  
    BibTeX:
    @article{2011Natur.478..490C,
      author = {Casanova, J. and José, J. and Garca-Berro, E. and Shore, S.~N. and Calder, A.~C.},
      title = {Kelvin-Helmholtz instabilities as the source of inhomogeneous mixing in nova explosions},
      journal = {nat},
      year = {2011},
      volume = {478},
      pages = {490-492},
      doi = {http://dx.doi.org/10.1038/nature10520}
    }
    
    Chamulak, D., Meakin, C., Seitenzahl, I. & Truran, J. IOPscience-Asymmetry and the Nucleosynthetic Signature of Nearly Edge-lit Detonation in White Dwarf Cores 2012 The Astrophysical Journal
    Vol. 744, pp. 27 
    article  
    BibTeX:
    @article{chamulak2012iopscience,
      author = {Chamulak, D.A. and Meakin, C.A. and Seitenzahl, I.R. and Truran, J.W.},
      title = {IOPscience-Asymmetry and the Nucleosynthetic Signature of Nearly Edge-lit Detonation in White Dwarf Cores},
      journal = {The Astrophysical Journal},
      publisher = {IOP Publishing},
      year = {2012},
      volume = {744},
      pages = {27}
    }
    
    Chamulak, D., Meakin, C., Seitenzahl, I. & Truran, J. Nucleosynthesis in Highly Off-Center Detonation Models of Type Ia Supernovae 2010   article  
    BibTeX:
    @article{chamulak2010nucleosynthesis,
      author = {Chamulak, D.A. and Meakin, C.A. and Seitenzahl, I. and Truran, J.W.},
      title = {Nucleosynthesis in Highly Off-Center Detonation Models of Type Ia Supernovae},
      year = {2010}
    }
    
    Chan, A., Gropp, W. & Lusk, E. An Efficient Format for Nearly Constant-Time Access to Arbitrary Time Intervals in Large Trace Files 2008 Scientific Programming
    Vol. 16(2), pp. 155-165 
    article  
    BibTeX:
    @article{Chan2008,
      author = {Chan, A. and Gropp, W. and Lusk, E.},
      title = {An Efficient Format for Nearly Constant-Time Access to Arbitrary Time Intervals in Large Trace Files},
      journal = {Scientific Programming},
      publisher = {IOS Press},
      year = {2008},
      volume = {16},
      number = {2},
      pages = {155--165}
    }
    
    Charignon, C. & Chièze, J. Deflagration to detonation transition by amplification of acoustic waves in type Ia supernovae 2013 arXiv preprint arXiv:1301.1523  article  
    BibTeX:
    @article{charignon2013deflagration,
      author = {Charignon, C. and Chièze, J.P.},
      title = {Deflagration to detonation transition by amplification of acoustic waves in type Ia supernovae},
      journal = {arXiv preprint arXiv:1301.1523},
      year = {2013}
    }
    
    Chastain, R.J., Shelton, R.L., Raley, E.A. & Magnani, L. A High-Latitude Molecular Structure in Pegasus-Pisces 2006 Astronomical Journal
    Vol. 132, pp. 1964-1976 
    article DOI  
    BibTeX:
    @article{Chastain2006,
      author = {Chastain, R.~J. and Shelton, R.~L. and Raley, E.~A. and Magnani, L.},
      title = {A High-Latitude Molecular Structure in Pegasus-Pisces},
      journal = {Astronomical Journal},
      year = {2006},
      volume = {132},
      pages = {1964-1976},
      doi = {http://dx.doi.org/10.1086/507870}
    }
    
    Chatzopoulos, E. & Wheeler, C.J. Effects of Rotation on the Minimum Mass of Primordial Progenitors of Pair-instability Supernovae 2012 The Astrophysical Journal
    Vol. 748, pp. 42 
    article  
    BibTeX:
    @article{chatzopoulos2012effects,
      author = {Chatzopoulos, E. and Craig J. Wheeler},
      title = {Effects of Rotation on the Minimum Mass of Primordial Progenitors of Pair-instability Supernovae},
      journal = {The Astrophysical Journal},
      publisher = {IOP Publishing},
      year = {2012},
      volume = {748},
      pages = {42}
    }
    
    Chatzopoulos, E. & Wheeler, J. Hydrogen-Poor Circumstellar Shells from Pulsational Pair-Instability Supernovae with Rapidly Rotating Progenitors 2012 The Astrophysical Journal
    Vol. 760(2), pp. 154 
    article  
    BibTeX:
    @article{chatzopoulos2012hydrogen,
      author = {Chatzopoulos, E. and Wheeler, J.C.},
      title = {Hydrogen-Poor Circumstellar Shells from Pulsational Pair-Instability Supernovae with Rapidly Rotating Progenitors},
      journal = {The Astrophysical Journal},
      publisher = {IOP Publishing},
      year = {2012},
      volume = {760},
      number = {2},
      pages = {154}
    }
    
    Cheung, M.C.M., Moreno-Insertis, F. & Schüssler, M. Moving magnetic tubes: Fragmentation, vortex streets and the limit of the approximation of thin flux tubes 2006 Astronomy and Astrophysics
    Vol. 451, pp. 303-317 
    article DOI  
    BibTeX:
    @article{Cheung2006,
      author = {Cheung, M.~C.~M. and Moreno-Insertis, F. and Schüssler, M. },
      title = {Moving magnetic tubes: Fragmentation, vortex streets and the limit of the approximation of thin flux tubes},
      journal = {Astronomy and Astrophysics},
      year = {2006},
      volume = {451},
      pages = {303-317},
      doi = {http://dx.doi.org/10.1051/0004-6361:20054499}
    }
    
    Chilan, C., Yang, M., Cheng, A. & Arber, L. Parallel I/O performance study with HDF5, a scientific data package 2008 The HDF5 Goup  misc URL 
    BibTeX:
    @misc{Chilan2008,
      author = {Chilan, C.M. and Yang, M.Q. and Cheng, A. and Arber, L.},
      title = {Parallel I/O performance study with HDF5, a scientific data package},
      publisher = {The HDF Group, viewed February},
      year = {2008},
      url = {http://hdf.nscsa.uiuc.edu/HDF5/}
    }
    
    Ching, A., Choudhary, A., Liao, W. & Ross, R. Evaluating structured I/O methods for parallel file systems 2004 International Journal of High Performance Computing and Networking
    Vol. 2(2), pp. 133-145 
    article  
    BibTeX:
    @article{Ching2004,
      author = {Ching, A. and Choudhary, A. and Liao, W.K. and Ross, R.},
      title = {Evaluating structured I/O methods for parallel file systems},
      journal = {International Journal of High Performance Computing and Networking},
      publisher = {Inderscience},
      year = {2004},
      volume = {2},
      number = {2},
      pages = {133--145}
    }
    
    Ching, A., Choudhary, A., Liao, W., Ross, R. & Gropp, W. Efficient Structured Data Access in Parallel File Systems 2003 Proceedings of the IEEE International Conference on Cluster Computing  inproceedings  
    BibTeX:
    @inproceedings{Ching2003,
      author = {Ching, A. and Choudhary, A. and Liao, W. and Ross, R. and Gropp, W.},
      title = {Efficient Structured Data Access in Parallel File Systems},
      booktitle = {Proceedings of the IEEE International Conference on Cluster Computing},
      year = {2003}
    }
    
    Ching, A., Choudhary, A., Liao, W., Ross, R. & Gropp, W. Noncontiguous I/O through PVFS 2002 Cluster Computing, 2002. Proceedings. 2002 IEEE International Conference on, pp. 405-414  article  
    BibTeX:
    @article{Ching2002,
      author = {Ching, A. and Choudhary, A. and Liao, W. and Ross, R. and Gropp, W.},
      title = {Noncontiguous I/O through PVFS},
      journal = {Cluster Computing, 2002. Proceedings. 2002 IEEE International Conference on},
      year = {2002},
      pages = {405--414}
    }
    
    Ching, A., Choudhary, A., Liao, W., Ward, L. & Pundit, N. Evaluating I/O characteristics and methods for storing structured scientific data 2006 Proceedings of the International Parallel & Distributed Processing Symposium  inproceedings  
    BibTeX:
    @inproceedings{Ching2006,
      author = {Ching, A. and Choudhary, A. and Liao, W.K. and Ward, L. and Pundit, N.},
      title = {Evaluating I/O characteristics and methods for storing structured scientific data},
      booktitle = {Proceedings of the International Parallel & Distributed Processing Symposium},
      publisher = {IEEE Computer Society Press},
      year = {2006}
    }
    
    Ching, A., Coloma, K. & Choudhary, A. Engineering the Grid: Status and Perspective 2006   inbook  
    BibTeX:
    @inbook{Ching2006a,
      author = {Ching, A. and Coloma, K. and Choudhary, A.},
      title = {Engineering the Grid: Status and Perspective},
      publisher = {American Scientific Publishers},
      year = {2006}
    }
    
    Ching, A., keng Liao, W., Choudhary, A. & Ross, R. Noncontiguous Locking Techniques for Parallel File Systems ABSTRACT 2008   article URL 
    Abstract: Many parallel scientific applications use high-level I/O APIs that offer atomic I/O capabilities. Atomic I/O in current parallel file systems is often slow when multiple processes simultaneously access interleaved, shared files. Current atomic I/O solutions are not optimized for handling noncontiguous access patterns because current locking systems have a fixed file system block-based granularity and do not leverage highlevel access pattern information. In this paper we present a hybrid lock protocol that takes advantage of new list and datatype byte-range lock description techniques to enable high performance atomic I/O operations for these challenging access patterns. We implement our scalable distributed lock manager (DLM) in the PVFS parallel file system and show that these techniques improve locking throughput over a naive noncontiguous locking approach by several orders of magnitude in an array of lockonly tests. Additionally, in two scientific I/O benchmarks, we show the benefits of avoiding false sharing with our byterange granular DLM when compared against a block-based lock system implementation. 1.
    BibTeX:
    @article{Ching2008,
      author = {Avery Ching and Wei-keng Liao and Alok Choudhary and Robert Ross},
      title = {Noncontiguous Locking Techniques for Parallel File Systems ABSTRACT},
      year = {2008},
      url = {http://citeseerx.ist.psu.edu/viewdoc/summary?doi=?doi=10.1.1.103.6693}
    }
    
    Chmielewski, P., Srivastava, A., Murawski, K. & Musielak, Z. Pulse-driven non-linear Alfvén waves and their role in the spectral line broadening 2013 Monthly Notices of the Royal Astronomical Society
    Vol. 428(1), pp. 40-49 
    article  
    BibTeX:
    @article{chmielewski2013pulse,
      author = {Chmielewski, P and Srivastava, AK and Murawski, K and Musielak, ZE},
      title = {Pulse-driven non-linear Alfvén waves and their role in the spectral line broadening},
      journal = {Monthly Notices of the Royal Astronomical Society},
      publisher = {Oxford University Press},
      year = {2013},
      volume = {428},
      number = {1},
      pages = {40--49}
    }
    
    Chupryna, V. Explicit Methods in the Nuclear Burning Problem for Supernova Ia Models 2008 School: University of Tennessee - Knoxville  phdthesis URL 
    BibTeX:
    @phdthesis{Chupryna2008,
      author = {Chupryna, V.},
      title = {Explicit Methods in the Nuclear Burning Problem for Supernova Ia Models},
      school = {University of Tennessee - Knoxville},
      year = {2008},
      url = {http://trace.tennessee.edu/utk_graddiss/484}
    }
    
    Ciecielä G, P., Ida, S., Gawryszczak, A. & Burkert, A. The gas drag in a circular binary system 2007 Astronomy and Astrophysics
    Vol. 470, pp. 367-375 
    article DOI  
    BibTeX:
    @article{Cieciela2007,
      author = {Ciecielä G, P. and Ida, S. and Gawryszczak, A. and Burkert, A.},
      title = {The gas drag in a circular binary system},
      journal = {Astronomy and Astrophysics},
      year = {2007},
      volume = {470},
      pages = {367-375},
      doi = {http://dx.doi.org/10.1051/0004-6361:20077284}
    }
    
    Coloma, K., Choudhary, A., Liao, W., Ward, L., Russell, E. & Pundit, N. Scalable high-level caching for parallel I/O 2004 Parallel and Distributed Processing Symposium, 2004. Proceedings. 18th International  article  
    BibTeX:
    @article{Coloma2004,
      author = {Coloma, K. and Choudhary, A. and Liao, W. and Ward, L. and Russell, E. and Pundit, N.},
      title = {Scalable high-level caching for parallel I/O},
      journal = {Parallel and Distributed Processing Symposium, 2004. Proceedings. 18th International},
      year = {2004}
    }
    
    Comparato, M., Antonuccio, V., Becciani, U., Dubey, A., Plewa, T. & Sheeler, D. FLY-FLASH: A Software Interface for Adaptive Mesh Refinement - Treecode Simulations . 2006 Memorie della Societa Astronomica Italiana Supplement
    Vol. 9, pp. 448-+ 
    article  
    BibTeX:
    @article{Comparato2006,
      author = {Comparato, M. and Antonuccio, V. and Becciani, U. and Dubey, A. and Plewa, T. and Sheeler, D.},
      title = {FLY-FLASH: A Software Interface for Adaptive Mesh Refinement - Treecode Simulations .},
      journal = {Memorie della Societa Astronomica Italiana Supplement},
      year = {2006},
      volume = {9},
      pages = {448-+}
    }
    
    Corrales, L., Haiman, Z. & MacFadyen, A. Hydrodynamical response of a circumbinary gas disc to black hole recoil and mass loss 2010 Monthly Notices of the Royal Astronomical Society
    Vol. 404(2), pp. 947-962 
    article  
    BibTeX:
    @article{corrales2010hydrodynamical,
      author = {Corrales, L.R. and Haiman, Z. and MacFadyen, A.},
      title = {Hydrodynamical response of a circumbinary gas disc to black hole recoil and mass loss},
      journal = {Monthly Notices of the Royal Astronomical Society},
      publisher = {Wiley Online Library},
      year = {2010},
      volume = {404},
      number = {2},
      pages = {947--962}
    }
    
    Couch, S.M. The Impact of Dimensionality in Parametric Neutrino-Driven Core-Collapse Supernovae: 3D Results   article  
    BibTeX:
    @article{couchimpact,
      author = {Couch, S. M.},
      title = {The Impact of Dimensionality in Parametric Neutrino-Driven Core-Collapse Supernovae: 3D Results}
    }
    
    Couch, S.M. The Dependence of the Neutrino Mechanism of Core-collapse Supernovae on the Equation of State 2013 The Astrophysical Journal
    Vol. 765(1), pp. 29 
    article  
    BibTeX:
    @article{couch2013dependence,
      author = {Couch, Sean M.},
      title = {The Dependence of the Neutrino Mechanism of Core-collapse Supernovae on the Equation of State},
      journal = {The Astrophysical Journal},
      publisher = {IOP Publishing},
      year = {2013},
      volume = {765},
      number = {1},
      pages = {29}
    }
    
    Couch, S.M., Graziani, C. & Flocke, N. An Improved Multipole Approximation for Self-gravity and Its Importance for Core-collapse Supernova Simulations 2013 The Astrophysical Journal
    Vol. 778(2), pp. 181 
    article DOI URL 
    BibTeX:
    @article{couch2013improved,
      author = {Couch, Sean M. and Graziani, Carlo and Flocke, Norbert},
      title = {An Improved Multipole Approximation for Self-gravity and Its Importance for Core-collapse Supernova Simulations},
      journal = {The Astrophysical Journal},
      year = {2013},
      volume = {778},
      number = {2},
      pages = {181},
      url = {http://stacks.iop.org/0004-637X/778/i=2/a=181},
      doi = {http://dx.doi.org/10.1088/0004-637X/778/2/181}
    }
    
    Couch, S.M., Pooley, D., Wheeler, J.C. & Milosavljević, M. Aspherical Supernova Shock Breakout and the Observations of Supernova 2008D 2011 The Astrophysical Journal
    Vol. 727(2), pp. 104 
    article DOI URL 
    Abstract: Shock breakout is the earliest, readily observable emission from a core-collapse supernova (SN) explosion. Observing SN shock breakout may yield information about the nature of the SN shock prior to exiting the progenitor and, in turn, about the core-collapse SN mechanism itself. X-ray outburst 080109, later associated with SN 2008D, is a very well-observed example of shock breakout from a core-collapse SN. Despite excellent observational coverage and detailed modeling, fundamental information about the shock breakout, such as the radius of breakout and driver of the light curve timescale, is still uncertain. The models constructed for explaining the shock breakout emission from SN 2008D all assume spherical symmetry. We present a study of the observational characteristics of aspherical shock breakout from stripped-envelope core-collapse SNe surrounded by a wind. We conduct two-dimensional, jet-driven SN simulations from stripped-envelope progenitors and calculate the resulting shock breakout X-ray spectra and light curves. The X-ray spectra evolve significantly in time as the shocks expand outward and are not fit well by single-temperature and radius blackbodies. The timescale of the X-ray burst light curve of the shock breakout is related to the shock crossing time of the progenitor, and not to the much shorter light crossing time that sets the light curve timescale in spherical breakouts. This could explain the long shock breakout light curve timescale observed for XRO 080109/SN 2008D. We also comment on the distribution of intermediate-mass elements in asymmetric explosions.
    BibTeX:
    @article{Couch:2011cf,
      author = {Couch, Sean M and Pooley, David and Wheeler, J Craig and Milosavljević, Milov s},
      title = {Aspherical Supernova Shock Breakout and the Observations of Supernova 2008D},
      journal = {The Astrophysical Journal},
      year = {2011},
      volume = {727},
      number = {2},
      pages = {104},
      url = {http://adsabs.harvard.edu/cgi-bin/nph-data_query?bibcode=2011ApJ...727..104C&link_type=ABSTRACT},
      doi = {http://dx.doi.org/10.1088/0004-637X/727/2/104}
    }
    
    Couch, S.M., Wheeler, J.C. & Milosavljević, M. Hydrodynamic Instabilities in Jet-Induced Supernovae: Results of 2D Simulations 2008
    Vol. 393New Horizons in Astronomy: Frank N. Bash Symposium 2007, pp. 183 
    inproceedings  
    BibTeX:
    @inproceedings{Couch2008a,
      author = {Couch, S. M. and Wheeler, J. C. and Milosavljević, M.},
      title = {Hydrodynamic Instabilities in Jet-Induced Supernovae: Results of 2D Simulations},
      booktitle = {New Horizons in Astronomy: Frank N. Bash Symposium 2007},
      year = {2008},
      volume = {393},
      pages = {183}
    }
    
    Couch, S.M., Wheeler, J.C. & Milosavljević, M. Aspherical Core-Collapse Supernovae in Red Supergiants Powered by Nonrelativistic Jets 2009 The Astrophysical Journal
    Vol. 696(1), pp. 953-970 
    article DOI URL 
    Abstract: We explore the observational characteristics of jet-driven supernovae (SNe) by simulating bipolar-jet-driven explosions in a red supergiant (RSG) progenitor. We present results of four models in which we hold the injected kinetic energy at a constant 1051 erg across all jet models but vary the specific characteristics of the jets to explore the influence of the nature of jets on the structure of the SN ejecta. We evolve the explosions past shock-breakout and into quasi-homologous expansion of the SN envelope into a RSG wind. The simulations have sufficient numerical resolution to study the stability of the flow. Our simulations show the development of fluid instabilities that produce pristine helium clumps in the hydrogen envelope. The oppositely directed, nickel-rich jets give a large-scale asymmetry that may account for the nonspherical excitation and substructure of spectral lines such as H?? and He I 10830 Å. Jets with a large fraction of kinetic to thermal energy punch through the progenitor envelope and give rise to explosions that would be observed to be asymmetric from the earliest epochs, inconsistent with spectropolarimetric measurements of Type II SNe. Jets with higher thermal energy fractions result in explosions that are roughly spherical at large radii but are significantly elongated at smaller radii, deep inside the ejecta, in agreement with the polarimetric observations. We present shock-breakout light curves that indicate that strongly aspherical shock breakouts are incompatible with recent Galaxy Evolution Explorer observations of shock breakout from RSG stars. Comparison with observations indicates that jets must deposit their kinetic energy efficiently throughout the ejecta while in the hydrogen envelope. Thermal-energy-dominated jets satisfy this criterion and yield many of the observational characteristics of Type II SNe.
    BibTeX:
    @article{Couch:2009bu,
      author = {Couch, Sean M. and Wheeler, J. Craig and Milosavljević, Miloš},
      title = {Aspherical Core-Collapse Supernovae in Red Supergiants Powered by Nonrelativistic Jets},
      journal = {The Astrophysical Journal},
      year = {2009},
      volume = {696},
      number = {1},
      pages = {953--970},
      url = {http://adsabs.harvard.edu/cgi-bin/nph-data_query?bibcode=2009ApJ...696..953C&link_type=ABSTRACT},
      doi = {http://dx.doi.org/10.1088/0004-637X/696/1/953}
    }
    
    Couch, S.M. On the Impact of Three Dimensions in Simulations of Neutrino-Driven Core-Collapse Supernova Explosions 2012 ArXiv e-prints  article  
    BibTeX:
    @article{2012arXiv1212.0010C,
      author = {Couch, S.~M.},
      title = {On the Impact of Three Dimensions in Simulations of Neutrino-Driven Core-Collapse Supernova Explosions},
      journal = {ArXiv e-prints},
      year = {2012}
    }
    
    Creasey, P., Theuns, T., Bower, R. & Lacey, C. Numerical overcooling in shocks 2011 Monthly Notices of the Royal Astronomical Society  article  
    BibTeX:
    @article{creasey2011numerical,
      author = {Creasey, P. and Theuns, T. and Bower, R.G. and Lacey, C.G.},
      title = {Numerical overcooling in shocks},
      journal = {Monthly Notices of the Royal Astronomical Society},
      publisher = {Wiley Online Library},
      year = {2011}
    }
    
    Creasey, P., Theuns, T. & Bower, R.G. How supernova explosions power galactic winds 2013 Monthly Notices of the Royal Astronomical Society
    Vol. 429(3), pp. 1922-1948 
    article  
    BibTeX:
    @article{creasey2013supernova,
      author = {Creasey, Peter and Theuns, Tom and Bower, Richard G},
      title = {How supernova explosions power galactic winds},
      journal = {Monthly Notices of the Royal Astronomical Society},
      publisher = {Oxford University Press},
      year = {2013},
      volume = {429},
      number = {3},
      pages = {1922--1948}
    }
    
    Cunningham, A.J., Frank, A., Varniere, P., Mitran, S. & Jones, T.W. Simulating Magnetohydrodynamical Flow with Constrained Transport and Adaptive Mesh Refinement; Algorithms amp Tests of the AstroBEAR Code 2007 ArXiv e-prints
    Vol. 710 
    article  
    BibTeX:
    @article{Cunningham2007,
      author = {Cunningham, A.~J. and Frank, A. and Varniere, P. and Mitran, S. and Jones, T.~W.},
      title = {Simulating Magnetohydrodynamical Flow with Constrained Transport and Adaptive Mesh Refinement; Algorithms amp Tests of the AstroBEAR Code},
      journal = {ArXiv e-prints},
      year = {2007},
      volume = {710},
      note = {Submitted to ApJS}
    }
    
    Dale, J.E., Wünsch, R., Whitworth, A. & Palouš, J. The fragmentation of expanding shells - I. Limitations of the thin-shell approximation 2009 Monthly Notices of the RAS
    Vol. 398, pp. 1537-1548 
    article DOI  
    BibTeX:
    @article{Dale2009,
      author = {Dale, James E. and Wünsch, Richard and Whitworth, Anthony and Palouš, Jan},
      title = {The fragmentation of expanding shells - I. Limitations of the thin-shell approximation},
      journal = {Monthly Notices of the RAS},
      year = {2009},
      volume = {398},
      pages = {1537-1548},
      doi = {http://dx.doi.org/10.1111/j.1365-2966.2009.15213.x}
    }
    
    Daley, C., Bachan, J., Couch, S., Dubey, A., Fatenejad, M., Gallagher, B., Lee, D. & Weide, K. Adding shared memory parallelism to FLASH for many-core architectures 2012 TACC-Intel Highly Parallel Computing Symposium  unpublished URL 
    BibTeX:
    @unpublished{TI-HPCS11_Submission_6,
      author = {Chris Daley and John Bachan and Sean Couch and Anshu Dubey and Milad Fatenejad and Brad Gallagher and Dongwook Lee and Klaus Weide},
      title = {Adding shared memory parallelism to FLASH for many-core architectures},
      booktitle = {TACC-Intel Highly Parallel Computing Symposium},
      year = {2012},
      note = {Presented at TACC-Intel Highly Parallel Computing Symposium},
      url = {http://flash.uchicago.edu/~cdaley/TACC-Intel/TACC.pdf}
    }
    
    Daley, C., Vanella, M., Dubey, A., Weide, K. & Balaras, E. Optimization of multigrid based elliptic solver for large scale simulations in the FLASH code 2012 Concurrency and Computation: Practice and Experience
    Vol. 24(18), pp. 2346-2361 
    article DOI URL 
    BibTeX:
    @article{CPE:CPE2821,
      author = {Daley, Christopher and Vanella, Marcos and Dubey, Anshu and Weide, Klaus and Balaras, Elias},
      title = {Optimization of multigrid based elliptic solver for large scale simulations in the FLASH code},
      journal = {Concurrency and Computation: Practice and Experience},
      publisher = {John Wiley & Sons, Ltd},
      year = {2012},
      volume = {24},
      number = {18},
      pages = {2346-2361},
      url = {http://dx.doi.org/10.1002/cpe.2821},
      doi = {http://dx.doi.org/10.1002/cpe.2821}
    }
    
    Dalla Vecchia, C., Bower, R.G., Theuns, T., Balogh, M.L., Mazzotta, P. & Frenk, C.S. Quenching cluster cooling flows with recurrent hot plasma bubbles 2004 Monthly Notices of the RAS
    Vol. 355, pp. 995-1004 
    article DOI  
    BibTeX:
    @article{Dalla2004,
      author = {Dalla Vecchia, C. and Bower, R.~G. and Theuns, T. and Balogh, M.~L. and Mazzotta, P. and Frenk, C.~S.},
      title = {Quenching cluster cooling flows with recurrent hot plasma bubbles},
      journal = {Monthly Notices of the RAS},
      year = {2004},
      volume = {355},
      pages = {995-1004},
      doi = {http://dx.doi.org/10.1111/j.1365-2966.2004.08381.x}
    }
    
    Dan, M., Rosswog, S., Guillochon, J. & Ramirez-Ruiz, E. Prelude to a double degenerate merger: the onset of mass transfer and its impact on gravitational waves and surface detonations 2011 The Astrophysical Journal
    Vol. 737, pp. 89 
    article  
    BibTeX:
    @article{dan2011prelude,
      author = {Dan, M. and Rosswog, S. and Guillochon, J. and Ramirez-Ruiz, E.},
      title = {Prelude to a double degenerate merger: the onset of mass transfer and its impact on gravitational waves and surface detonations},
      journal = {The Astrophysical Journal},
      publisher = {IOP Publishing},
      year = {2011},
      volume = {737},
      pages = {89}
    }
    
    Daniłko, D., Murawski, K. & Erdélyi, R. Numerical Simulations of Magnetoacoustic Waves in the Gravitationally Stratified Solar Atmosphere 2012 Acta Physica Polonica B
    Vol. 43(6), pp. 1365 
    article  
    BibTeX:
    @article{danilko2012numerical,
      author = {Daniłko, D. and Murawski, K. and Erdélyi, R.},
      title = {Numerical Simulations of Magnetoacoustic Waves in the Gravitationally Stratified Solar Atmosphere},
      journal = {Acta Physica Polonica B},
      year = {2012},
      volume = {43},
      number = {6},
      pages = {1365}
    }
    
    De Colle, F., Guillochon, J., Naiman, J. & Ramirez-Ruiz, E. The dynamics, appearance and demographics of relativistic jets triggered by tidal disruption of stars in quiescent supermassive black holes 2012 arXiv preprint arXiv:1205.1507  article  
    BibTeX:
    @article{de2012dynamics,
      author = {De Colle, F. and Guillochon, J. and Naiman, J. and Ramirez-Ruiz, E.},
      title = {The dynamics, appearance and demographics of relativistic jets triggered by tidal disruption of stars in quiescent supermassive black holes},
      journal = {arXiv preprint arXiv:1205.1507},
      year = {2012}
    }
    
    Desai, N., Buntinas, D., Buettner, D., Balaji, P. & Chan, A. Improving Resource Availability By Relaxing Network Allocation Constraints on the Blue Gene/P 2009 International Conference on Parallel Processing  article  
    BibTeX:
    @article{Desai,
      author = {Desai, N. and Buntinas, D. and Buettner, D. and Balaji, P. and Chan, A.},
      title = {Improving Resource Availability By Relaxing Network Allocation Constraints on the Blue Gene/P},
      journal = {International Conference on Parallel Processing},
      year = {2009}
    }
    
    Desai, N., Buntinas, D., Buettner, D., Balaji, P. & Chan, A. Improving resource availability by relaxing network allocation constraints on Blue Gene/P 2009 Parallel Processing, 2009. ICPP'09. International Conference on, pp. 333-339  inproceedings  
    BibTeX:
    @inproceedings{desai2009improving,
      author = {Desai, N. and Buntinas, D. and Buettner, D. and Balaji, P. and Chan, A.},
      title = {Improving resource availability by relaxing network allocation constraints on Blue Gene/P},
      booktitle = {Parallel Processing, 2009. ICPP'09. International Conference on},
      year = {2009},
      pages = {333--339}
    }
    
    Devulapalli, A., Dalessandro, D., Wyckoff, P., Ali, N. & Sadayappan, P. Integrating Parallel File Systems with Object-based Storage Devices 2007 Proc. of Supercomputing  article  
    BibTeX:
    @article{Devulapalli2007,
      author = {Devulapalli, A. and Dalessandro, D. and Wyckoff, P. and Ali, N. and Sadayappan, P.},
      title = {Integrating Parallel File Systems with Object-based Storage Devices},
      journal = {Proc. of Supercomputing},
      year = {2007}
    }
    
    Diemer, B., Kessler, R., Graziani, C., Jordan, IV, G.C., Lamb, D.Q., Long, M. & van Rossum, D.R. Comparing the Light Curves of Simulated Type~Ia Supernovae with Observations Using Data-driven Models 2013 The Astrophysical Journal
    Vol. 773(2), pp. 119 
    article URL 
    BibTeX:
    @article{diemer2013comparing,
      author = {Benedikt Diemer and Richard Kessler and Carlo Graziani and Jordan, IV, George C. and Donald Q. Lamb and Min Long and Daniel R. van Rossum},
      title = {Comparing the Light Curves of Simulated Type~Ia Supernovae with Observations Using Data-driven Models},
      journal = {The Astrophysical Journal},
      year = {2013},
      volume = {773},
      number = {2},
      pages = {119},
      url = {http://stacks.iop.org/0004-637X/773/i=2/a=119}
    }
    
    Dimonte, G., Youngs, D.L., Dimits, A., Weber, S., Marinak, M., Wunsch, S., Garasi, C., Robinson, A., Andrews, M.J., Ramaprabhu, P., Calder, A.C., Fryxell, B., Biello, J., Dursi, L., MacNeice, P., Olson, K., Ricker, P., Rosner, R., Timmes, F., Tufo, H., Young, Y.-N. & Zingale, M. A comparative study of the turbulent Rayleigh-Taylor instability using high-resolution three-dimensional numerical simulations: The Alpha-Group collaboration 2004 Physics of Fluids
    Vol. 16, pp. 1668-+ 
    article  
    BibTeX:
    @article{Dimonte2004,
      author = {Dimonte, G. and Youngs, D.~L. and Dimits, A. and Weber, S. and Marinak, M. and Wunsch, S. and Garasi, C. and Robinson, A. and Andrews, M.~J. and Ramaprabhu, P. and Calder, A.~C. and Fryxell, B. and Biello, J. and Dursi, L. and MacNeice, P. and Olson, K. and Ricker, P. and Rosner, R. and Timmes, F. and Tufo, H. and Young, Y.-N. and Zingale, M.},
      title = {A comparative study of the turbulent Rayleigh-Taylor instability using high-resolution three-dimensional numerical simulations: The Alpha-Group collaboration},
      journal = {Physics of Fluids},
      year = {2004},
      volume = {16},
      pages = {1668-+}
    }
    
    Dobbie, P., Kuncic, Z., Bicknell, G. & Salmeron, R. Enhanced MHD transport in astrophysical accretion flows: turbulence, winds and jets 2009 ImprintIAU Symposium 259: "Cosmic Magnetic Fields: From Planets, To Stars and Galaxies"  inproceedings  
    BibTeX:
    @inproceedings{Dobbie2009a,
      author = {Dobbie, P.B. and Kuncic, Z. and Bicknell, G.V. and Salmeron, R.},
      title = {Enhanced MHD transport in astrophysical accretion flows: turbulence, winds and jets},
      booktitle = {IAU Symposium 259: "Cosmic Magnetic Fields: From Planets, To Stars and Galaxies"},
      journal = {Imprint},
      year = {2009},
      note = {eprint arXiv: 0902.0414}
    }
    
    Dobbie, P., Kuncic, Z., Bicknell, G. & Salmeron, R. Enhanced MHD transport in astrophysical accretion flows: turbulence, winds and jets 2009 Plasma and Fusion Research
    Vol. 4(0), pp. 17-17 
    article  
    BibTeX:
    @article{dobbie2009enhanced,
      author = {Dobbie, P.B. and Kuncic, Z. and Bicknell, G.V. and Salmeron, R.},
      title = {Enhanced MHD transport in astrophysical accretion flows: turbulence, winds and jets},
      journal = {Plasma and Fusion Research},
      publisher = {J-STAGE},
      year = {2009},
      volume = {4},
      number = {0},
      pages = {17--17}
    }
    
    Dobbie, P.B., Kuncic, Z., Bicknell, G.V. & Salmeron, R. New Global 3D MHD Simulations of Black Hole Disk Accretion and Outflows 2009 ArXiv e-printsIAU Symposium 259: "Cosmic Magnetic Fields: From Planets, To Stars and Galaxies"  inproceedings  
    BibTeX:
    @inproceedings{Dobbie2009,
      author = {Dobbie, P.~B. and Kuncic, Z. and Bicknell, G.~V. and Salmeron, R.},
      title = {New Global 3D MHD Simulations of Black Hole Disk Accretion and Outflows},
      booktitle = {IAU Symposium 259: "Cosmic Magnetic Fields: From Planets, To Stars and Galaxies"},
      journal = {ArXiv e-prints},
      year = {2009},
      note = {to appear; now arXiv:0902.0414}
    }
    
    Dolag, K., Borgani, S., Schindler, S., Diaferio, A. & Bykov, A.M. Simulation Techniques for Cosmological Simulations 2008 Space Science Reviews
    Vol. 134, pp. 229-268 
    article DOI  
    BibTeX:
    @article{Dolag2008,
      author = {Dolag, K. and Borgani, S. and Schindler, S. and Diaferio, A. and Bykov, A.~M.},
      title = {Simulation Techniques for Cosmological Simulations},
      journal = {Space Science Reviews},
      year = {2008},
      volume = {134},
      pages = {229-268},
      doi = {http://dx.doi.org/10.1007/s11214-008-9316-5}
    }
    
    Drake, J.J. & Orlando, S. The Early Blast Wave of the 2010 Explosion of U Scorpii 2010 The Astrophysical Journal Letters
    Vol. 720, pp. L195-L200 
    article DOI  
    BibTeX:
    @article{2010ApJ...720L.195D,
      author = {Drake, J. J. and Orlando, S.},
      title = {The Early Blast Wave of the 2010 Explosion of U Scorpii},
      journal = {The Astrophysical Journal Letters},
      year = {2010},
      volume = {720},
      pages = {L195-L200},
      doi = {http://dx.doi.org/10.1088/2041-8205/720/2/L195}
    }
    
    Drake, R.P., Harding, E.C. & Kuranz, C.C. Approaches to turbulence in high-energy-density experiments 2008 Physica Scripta Volume T
    Vol. 132(1), pp. 014022-+ 
    article DOI  
    BibTeX:
    @article{PaulDrake2008,
      author = {R. Paul Drake and Harding, E.~C. and Kuranz, C.~C.},
      title = {Approaches to turbulence in high-energy-density experiments},
      journal = {Physica Scripta Volume T},
      year = {2008},
      volume = {132},
      number = {1},
      pages = {014022-+},
      doi = {http://dx.doi.org/10.1088/0031-8949/2008/T132/014022}
    }
    
    Dubey, A., Almgren, A., Bell, J., Berzins, M., Brandt, S., Bryan, G., Colella, P., Graves, D., Lijewski, M., Löffler, F., O'Shea, B., Schnetter, E., Straalen, B.V. & Weide, K. A survey of high level frameworks in block-structured adaptive mesh refinement packages 2014 Journal of Parallel and Distributed Computing(0), pp. -   article DOI URL 
    Abstract: Over the last decade block-structured adaptive mesh refinement (SAMR) has found increasing use in large, publicly available codes and frameworks. SAMR frameworks have evolved along different paths. Some have stayed focused on specific domain areas, others have pursued a more general functionality, providing the building blocks for a larger variety of applications. In this survey paper we examine a representative set of SAMR packages and SAMR-based codes that have been in existence for half a decade or more, have a reasonably sized and active user base outside of their home institutions, and are publicly available. The set consists of a mix of SAMR packages and application codes that cover a broad range of scientific domains. We look at their high-level frameworks, their design trade-offs and their approach to dealing with the advent of radical changes in hardware architecture. The codes included in this survey are BoxLib, Cactus, Chombo, Enzo, FLASH, and Uintah.
    BibTeX:
    @article{Dubey2014Survey,
      author = {Anshu Dubey and Ann Almgren and John Bell and Martin Berzins and Steve Brandt and Greg Bryan and Phillip Colella and Daniel Graves and Michael Lijewski and Frank Löffler and Brian O'Shea and Erik Schnetter and Brian Van Straalen and Klaus Weide},
      title = {A survey of high level frameworks in block-structured adaptive mesh refinement packages},
      journal = {Journal of Parallel and Distributed Computing},
      year = {2014},
      number = {0},
      pages = { - },
      note = {In press},
      url = {http://www.sciencedirect.com/science/article/pii/S0743731514001178},
      doi = {http://dx.doi.org/10.1016/j.jpdc.2014.07.001}
    }
    
    Dubey, A., Antypas, K., Calder, A., Fryxell, B., Lamb, D., Ricker, P., Reid, L., Riley, K., Rosner, R., Siegel, A., Timmes, F., Vladimirova, N. & Weide, K. The Software Development Process of FLASH, a Multiphysics Simulation Code 2013 SE-CSE 2013: The 2013 International Workshop on Software Engineering for Computational Science and Engineering, pp. 1-8  inproceedings DOI URL 
    Abstract: The FLASH code has evolved into a modular and extensible scientific simulation software system over the decade of its existence. During this time it has been cumulatively used by over a thousand researchers in several scientific communities (i.e. astrophysics, cosmology, high-energy density physics, turbulence, fluid-structure interactions) to obtain results for research. The code started its life as an amalgamation of two already existing software packages and sections of other codes developed independently by various participating members of the team for other purposes. In the evolution process it has undergone four major revisions, three of which involved a significant architectural advancement. A corresponding evolution of the software process and policies for maintenance occurred simultaneously. The code is currently in its 4.x release with a substantial user community. Recently there has been an upsurge in the contributions by external users; some provide significant new capability. This paper outlines the software development and evolution processes that have contributed to the success of the FLASH code.
    BibTeX:
    @inproceedings{Dubey2013sc-cse,
      author = {Dubey, A. and Antypas, K. and Calder, A. and Fryxell, B. and Lamb, Don and Ricker, P. and Reid, L. and Riley, K. and Rosner, R. and Siegel, A. and Timmes, F. and Vladimirova, N. and Weide, K.},
      title = {The Software Development Process of FLASH, a Multiphysics Simulation Code},
      booktitle = {SE-CSE 2013: The 2013 International Workshop on Software Engineering for Computational Science and Engineering},
      year = {2013},
      pages = {1-8},
      url = {http://flash.uchicago.edu/site/publications/HostedPapers/icsews13secse-id3-p-16586-preprint.pdf},
      doi = {http://dx.doi.org/10.1109/SECSE.2013.6615093}
    }
    
    Dubey, A., Antypas, K., Calder, A.C., Daley, C., Fryxell, B., Gallagher, J.B., Lamb, D.Q., Lee, D., Olson, K., Reid, L.B., Rich, P., Ricker, P.M., Riley, K.M., Rosner, R., Siegel, A., Taylor, N.T., Weide, K., Timmes, F.X., Vladimirova, N. & ZuHone, J. Evolution of FLASH, a Multi-physics Scientific Simulation Code for High-Performance Computing 2014 International Journal of High Performance Computing Applications
    Vol. 28(2), pp. 225-237 
    article DOI  
    BibTeX:
    @article{Dubey2013,
      author = {Dubey, Anshu and Antypas, Katie and Calder, Alan C. and Daley, Chris and Fryxell, Bruce and Gallagher, J. Brad and Lamb, Donald Q. and Lee, Dongwook and Olson, Kevin and Reid, Lynn B. and Rich, Paul and Ricker, Paul M. and Riley, Katherine M. and Rosner, Robert and Siegel, Andrew and Taylor, Noel T. and Weide, Klaus and Timmes, Francis X. and Vladimirova, Natasha and ZuHone, John},
      title = {Evolution of FLASH, a Multi-physics Scientific Simulation Code for High-Performance Computing},
      journal = {International Journal of High Performance Computing Applications},
      year = {2014},
      volume = {28},
      number = {2},
      pages = {225-237},
      doi = {http://dx.doi.org/10.1177/1094342013505656}
    }
    
    Dubey, A., Antypas, K. & Daley, C. Parallel algorithms for moving Lagrangian data on block structured Eulerian meshes 2011 Parallel Computing
    Vol. 37(2), pp. 101-113 
    article DOI  
    BibTeX:
    @article{Dubey2011,
      author = {Dubey, A. and Antypas, K. and Daley, C.},
      title = {Parallel algorithms for moving Lagrangian data on block structured Eulerian meshes},
      journal = {Parallel Computing},
      year = {2011},
      volume = {37},
      number = {2},
      pages = {101-113},
      doi = {http://dx.doi.org/10.1016/j.parco.2011.01.001}
    }
    
    Dubey, A., Antypas, K., Ganapathy, M.K., Reid, L.B., Riley, K., Sheeler, D., Siegel, A. & Weide, K. Extensible Component Based Architecture for FLASH, A Massively Parallel, Multiphysics Simulation Code 2009 Parallel Computing
    Vol. 35(10-11), pp. 512-522 
    article DOI URL 
    Abstract: FLASH is a publicly available high performance application code which has evolved into a modular, extensible software system from a collection of unconnected legacy codes. FLASH has been successful because its capabilities have been driven by the needs of scientific applications, without compromising maintainability, performance, and usability. In its newest incarnation, FLASH3 consists of inter-operable modules that can be combined to generate different applications. The FLASH architecture allows arbitrarily many alternative implementations of its components to co-exist and interchange with each other, resulting in greater flexibility. Further, a simple and elegant mechanism exists for customization of code functionality without the need to modify the core implementation of the source. A built-in unit test framework providing verifiability, combined with a rigorous software maintenance process, allow the code to operate simultaneously in the dual mode of production and development. In this paper we describe the FLASH3 architecture, with emphasis on solutions to the more challenging conflicts arising from solver complexity, portable performance requirements, and legacy codes. We also include results from user surveys conducted in 2005 and 2007, which highlight the success of the code.
    BibTeX:
    @article{Dubey2009,
      author = {Anshu Dubey and Katie Antypas and Murali K. Ganapathy and Lynn B. Reid and Katherine Riley and Dan Sheeler and Andrew Siegel and Klaus Weide},
      title = {Extensible Component Based Architecture for FLASH, A Massively Parallel, Multiphysics Simulation Code},
      journal = {Parallel Computing},
      year = {2009},
      volume = {35},
      number = {10-11},
      pages = {512-522},
      url = {http://www.sciencedirect.com/science/article/B6V12-4X54JHJ-1/2/b261a63ad1957b89222e859101236ca7},
      doi = {http://dx.doi.org/10.1016/j.parco.2009.08.001}
    }
    
    Dubey, A., Calder, A.C., Daley, C., Fisher, R.T., Graziani, C., Jordan, G.C., Lamb, D.Q., Reid, L.B., Townsley, D.M. & Weide, K. Pragmatic optimizations for better scientific utilization of large supercomputers 2013 International Journal of High Performance Computing Applications
    Vol. 27(3), pp. 360-373 
    article DOI URL 
    Abstract: Advances in modeling and algorithms, combined with growth in computing resources, have enabled simulations of multiphysics-multiscale phenomena that can greatly enhance our scientific understanding. However, on currently available high-performance computing (HPC) resources, maximizing the scientific outcome of simulations requires many trade-offs. In this paper we describe our experiences in running simulations of the explosion phase of Type Ia supernovae on the largest available platforms. The simulations use FLASH, a modular, adaptive mesh, parallel simulation code with a wide user base. The simulations use multiple physics components: hydrodynamics, gravity, a sub-grid flame model, a three-stage burning model, and a degenerate equation of state. They also use Lagrangian tracer particles, which are then post-processed to determine the nucleosynthetic yields. We describe the simulation planning process, and the algorithmic optimizations and trade-offs that were found to be necessary. Several of the optimizations and trade-offs were made during the course of the simulations as our understanding of the challenges evolved, or when simulations went into previously unexplored physical regimes. We also briefly outline the anticipated challenges of, and our preparations for, the next-generation computing platforms.
    BibTeX:
    @article{dubey2012pragmatic,
      author = {Dubey, A. and Calder, A. C. and Daley, C. and Fisher, R. T. and Graziani, C. and Jordan, G. C. and Lamb, D. Q. and Reid, L. B. and Townsley, D. M. and Weide, K.},
      title = {Pragmatic optimizations for better scientific utilization of large supercomputers},
      journal = {International Journal of High Performance Computing Applications},
      publisher = {SAGE Publications},
      year = {2013},
      volume = {27},
      number = {3},
      pages = {360-373},
      url = {http://hpc.sagepub.com/content/27/3/360},
      doi = {0.1177/1094342012464404}
    }
    
    Dubey, A., Daley, C. & Weide, K. Challenges of Computing with FLASH on Largest HPC Platforms 2010
    Vol. 1281ICNAAM 2010: International Conference of Numerical Analysis and Applied Mathematics 2010, pp. 1773-1776 
    inproceedings DOI URL 
    Abstract: FLASH is a highly capable multiphysics multiscale modular extensible code, originally designed for simulating reactive flows. FLASH consists of interoperable modules that can be combined to generate different applications such as simulations of novae, supernovae, X???Ray bursts, galaxy clusters, weakly compressible turbulence, and many other problems in astrophysics and other fields. FLASH has a wide user base, both within and outside the Flash Center, and is regularly used on largest available HPC platforms. With each new platform we encounter a new set of challenges, because the multiscale multiphysics nature of FLASH simulations exercise the machine???s hardware and system software greatly. The increase in the degree of concurrency with each new hardware generation has imposed changes on some of FLASH???s parallel algorithms. The pace of change has accelerated with the move towards petascale, and then to exascale. In this work we present some of our scaling hurdles and their solutions. In addition we discuss a more fundamental transition in the code to incorporate a hybrid shared and distributed memory model in preparation for the future million??? to billion???way parallelism.
    BibTeX:
    @inproceedings{dubeyRhodes2010,
      author = {Anshu Dubey and C. Daley and Klaus Weide},
      title = {Challenges of Computing with FLASH on Largest HPC Platforms},
      booktitle = {ICNAAM 2010: International Conference of Numerical Analysis and Applied Mathematics 2010},
      year = {2010},
      volume = {1281},
      pages = {1773-1776},
      url = {http://link.aip.org/link/doi/10.1063/1.3498219},
      doi = {http://dx.doi.org/10.1063/1.3498219}
    }
    
    Dubey, A., Daley, C., ZuHone, J., Ricker, P.M., Weide, K. & Graziani, C. Imposing a Lagrangian Particle Framework on an Eulerian Hydrodynamics Infrastructure in FLASH 2012 ApJ Supp
    Vol. 201(2), pp. 27 
    article DOI URL 
    Abstract: In many astrophysical simulations, both Eulerian and Lagrangian quantities are of interest. For example, in a galaxy cluster merger simulation, the intracluster gas can have Eulerian discretization, while dark matter can be modeled using particles. FLASH, a component-based scientific simulation code, superimposes a Lagrangian framework atop an adaptive mesh refinement Eulerian framework to enable such simulations. The discretization of the field variables is Eulerian, while the Lagrangian entities occur in many different forms including tracer particles, massive particles, charged particles in particle-in-cell mode, and Lagrangian markers to model fluid-structure interactions. These widely varying roles for Lagrangian entities are possible because of the highly modular, flexible, and extensible architecture of the Lagrangian framework. In this paper, we describe the Lagrangian framework in FLASH in the context of two very different applications, Type Ia supernovae and galaxy cluster mergers, which use the Lagrangian entities in fundamentally different ways.
    BibTeX:
    @article{Lagrangian_Framework_2012,
      author = {Anshu Dubey and Christopher Daley and John ZuHone and Paul M. Ricker and Klaus Weide and Carlo Graziani},
      title = {Imposing a Lagrangian Particle Framework on an Eulerian Hydrodynamics Infrastructure in FLASH},
      journal = {ApJ Supp},
      year = {2012},
      volume = {201},
      number = {2},
      pages = {27},
      url = {http://stacks.iop.org/0067-0049/201/27},
      doi = {http://dx.doi.org/10.1088/0067-0049/201/2/27}
    }
    
    Dubey, A., Fisher, R., Graziani, C., Jordan IV, G.C., Lamb, D.Q., Reid, L.B., Rich, P., Sheeler, D., Townsley, D. & Weide, K. Challenges of Extreme Computing using the FLASH code 2008
    Vol. 385Numerical Modeling of Space Plasma Flows: Astronum 2007, pp. 145 
    inproceedings  
    BibTeX:
    @inproceedings{Dubey2008,
      author = {Dubey, A. and Fisher, R. and Graziani, C. and Jordan IV, G. C. and Lamb, D.~Q. and Reid, L.~B. and Rich, P. and Sheeler, D. and Townsley, D. and Weide, K.},
      title = {Challenges of Extreme Computing using the FLASH code},
      booktitle = {Numerical Modeling of Space Plasma Flows: Astronum 2007},
      year = {2008},
      volume = {385},
      pages = {145}
    }
    
    Dubey, A., Mohapatra, P. & Weide, K. Fault tolerance using lower fidelity data in adaptive mesh applications 2013 Proceedings of the 3rd Workshop on Fault-tolerance for HPC at extreme scale, pp. 3-10  inproceedings DOI URL 
    BibTeX:
    @inproceedings{Dubey:2013:FTU:2465813.2465817,
      author = {Dubey, Anshu and Mohapatra, Prateeti and Weide, Klaus},
      title = {Fault tolerance using lower fidelity data in adaptive mesh applications},
      booktitle = {Proceedings of the 3rd Workshop on Fault-tolerance for HPC at extreme scale},
      publisher = {ACM},
      year = {2013},
      pages = {3--10},
      url = {http://doi.acm.org/10.1145/2465813.2465817},
      doi = {http://dx.doi.org/10.1145/2465813.2465817}
    }
    
    Dubey, A., Reid, L. & Fisher, R. Introduction to FLASH 3.0, with application to supersonic turbulence 2008 Physica Scripta
    Vol. T132 
    article  
    BibTeX:
    @article{Dubey2008a,
      author = {Dubey, A. and Reid, L.B. and Fisher, R.},
      title = {Introduction to FLASH 3.0, with application to supersonic turbulence},
      journal = {Physica Scripta},
      year = {2008},
      volume = {T132},
      note = {Topical Issue on Turbulent Mixing and Beyond, results of a conference at ICTP, Trieste, Italy, August 2008.}
    }
    
    Dubey, A., Weide, K., Lee, D., Bachan, J., Daley, C., Olofin, S., Taylor, N., Rich, P.M. & Reid, L.B. Ongoing Verification of a Multiphysics Community Code: FLASH 2013 Software: Practice and Experience, pp. n/a-n/a  article DOI URL 
    BibTeX:
    @article{Dubey2013a,
      author = {Dubey, Anshu and Weide, Klaus and Lee, Dongwook and Bachan, John and Daley, Christopher and Olofin, Samuel and Taylor, Noel and Rich, Paul M. and Reid, Lynn B.},
      title = {Ongoing Verification of a Multiphysics Community Code: FLASH},
      journal = {Software: Practice and Experience},
      year = {2013},
      pages = {n/a--n/a},
      url = {http://dx.doi.org/10.1002/spe.2220},
      doi = {http://dx.doi.org/10.1002/spe.2220}
    }
    
    Duffin, D.F. & Pudritz, R.E. Simulating hydromagnetic processes in star formation: introducing ambipolar diffusion into an adaptive mesh refinement code 2008 Monthly Notices of the RAS
    Vol. 391, pp. 1659-1673 
    article DOI  
    BibTeX:
    @article{Duffin2008,
      author = {Duffin, D.~F. and Pudritz, R.~E.},
      title = {Simulating hydromagnetic processes in star formation: introducing ambipolar diffusion into an adaptive mesh refinement code},
      journal = {Monthly Notices of the RAS},
      year = {2008},
      volume = {391},
      pages = {1659-1673},
      note = {to appear in MNRAS},
      doi = {http://dx.doi.org/10.1111/j.1365-2966.2008.14026.x}
    }
    
    Duncan, B. Pencil FFT implementation in the FLASH simulation code 2007 School: The University of Edinburgh  mastersthesis URL 
    BibTeX:
    @mastersthesis{Duncan2007,
      author = {Duncan, Bruce},
      title = {Pencil FFT implementation in the FLASH simulation code},
      school = {The University of Edinburgh},
      year = {2007},
      note = {MSc in High Performance Computing. Available at http://www.epcc.ed.ac.uk/sites/default/files/Dissertations/2006-2007/Bruce-Duncan.pdf},
      url = {http://www.epcc.ed.ac.uk/sites/default/files/Dissertations/2006-2007/Bruce-Duncan.pdf}
    }
    
    Durisen, R.H., Boss, A.P., Mayer, L., Nelson, A.F., Quinn, T. & Rice, W.K.M. Gravitational Instabilities in Gaseous Protoplanetary Disks and Implications for Giant Planet Formation 2007 Protostars and Planets V, pp. 607-622  inproceedings  
    BibTeX:
    @inproceedings{Durisen2007,
      author = {Durisen, R.~H. and Boss, A.~P. and Mayer, L. and Nelson, A.~F. and Quinn, T. and Rice, W.~K.~M.},
      title = {Gravitational Instabilities in Gaseous Protoplanetary Disks and Implications for Giant Planet Formation},
      booktitle = {Protostars and Planets V},
      year = {2007},
      pages = {607-622}
    }
    
    Dursi, L.J., Thompson, C., Doucette, D. & Hiratsuka, C. Towards Understanding Some Astrophysical Flows using Multiscale Simulations with the FLASH Code 2006 HPCS '06: Proceedings of the 20th International Symposium on High-Performance Computing in an Advanced Collaborative Environment, pp. 18  inproceedings DOI URL 
    BibTeX:
    @inproceedings{Dursi2006,
      author = {L. J. Dursi and C. Thompson and D. Doucette and C. Hiratsuka},
      title = {Towards Understanding Some Astrophysical Flows using Multiscale Simulations with the FLASH Code},
      booktitle = {HPCS '06: Proceedings of the 20th International Symposium on High-Performance Computing in an Advanced Collaborative Environment},
      publisher = {IEEE Computer Society},
      year = {2006},
      pages = {18},
      url = {http://portal.acm.org/citation.cfm?id=1136127#},
      doi = {http://dx.doi.org/10.1109/HPCS.2006.49}
    }
    
    Dursi, L.J., Calder, A.C., Alexakis, A., Truran, J.W., Zingale, M., Fryxell, B., Ricker, P., Timmes, F.X. & Olson, K. Onset of Convection on a Pre-Runaway White Dwarf 2002 AIP Conf. Proc. 637: Classical Nova Explosions, pp. 139-143  inproceedings  
    BibTeX:
    @inproceedings{Dursi2002,
      author = {Dursi, L.~J. and Calder, A.~C. and Alexakis, A. and Truran, J.~W. and Zingale, M. and Fryxell, B. and Ricker, P. and Timmes, F.~X. and Olson, K.},
      title = {Onset of Convection on a Pre-Runaway White Dwarf},
      booktitle = {AIP Conf. Proc. 637: Classical Nova Explosions},
      year = {2002},
      pages = {139-143}
    }
    
    Dursi, L.J. & Pfrommer, C. Draping of Cluster Magnetic Fields over Bullets and Bubbles-Morphology and Dynamic Effects 2008 Astrophysical Journal
    Vol. 677, pp. 993-1018 
    article DOI  
    BibTeX:
    @article{Dursi2008,
      author = {Dursi, L.~J. and Pfrommer, C.},
      title = {Draping of Cluster Magnetic Fields over Bullets and Bubbles-Morphology and Dynamic Effects},
      journal = {Astrophysical Journal},
      year = {2008},
      volume = {677},
      pages = {993-1018},
      doi = {http://dx.doi.org/10.1086/529371}
    }
    
    Dursi, L.J. & Timmes, F.X. Local Ignition in Carbon-Oxygen White Dwarfs. I. One-Zone Ignition and Spherical Shock Ignition of Detonations 2006 Astrophysical Journal
    Vol. 641, pp. 1071-1086 
    article DOI  
    BibTeX:
    @article{Dursi2006a,
      author = {Dursi, L.~J. and Timmes, F.~X.},
      title = {Local Ignition in Carbon-Oxygen White Dwarfs. I. One-Zone Ignition and Spherical Shock Ignition of Detonations},
      journal = {Astrophysical Journal},
      year = {2006},
      volume = {641},
      pages = {1071-1086},
      doi = {http://dx.doi.org/10.1086/500638}
    }
    
    Dursi, L.J. & Zingale, M. Efficiency Gains from Time Refinement on AMR Meshes and Explicit Timestepping 2005
    Vol. 41Adaptive Mesh Refinement -- Theory and Applications 
    inproceedings  
    BibTeX:
    @inproceedings{Dursi2004,
      author = {Dursi, L.~J. and Zingale, M.},
      title = {Efficiency Gains from Time Refinement on AMR Meshes and Explicit Timestepping},
      booktitle = {Adaptive Mesh Refinement -- Theory and Applications},
      publisher = {Springer},
      year = {2005},
      volume = {41},
      note = {Proceedings of the Chicago Workshop on Adaptive Mesh Refinement Methods, September 3--5, 2003}
    }
    
    Dursi, L.J., Zingale, M., Calder, A.C., Fryxell, B., Timmes, F.X., Vladimirova, N., Rosner, R., Caceres, A., Lamb, D.Q., Olson, K., Ricker, P.M., Riley, K., Siegel, A. & Truran, J.W. The Response of Model and Astrophysical Thermonuclear Flames to Curvature and Stretch 2003 Astrophysical Journal
    Vol. 595, pp. 955-979 
    article DOI  
    BibTeX:
    @article{Dursi2003b,
      author = {Dursi, L.~J. and Zingale, M. and Calder, A.~C. and Fryxell, B. and Timmes, F.~X. and Vladimirova, N. and Rosner, R. and Caceres, A. and Lamb, D.~Q. and Olson, K. and Ricker, P.~M. and Riley, K. and Siegel, A. and Truran, J.~W.},
      title = {The Response of Model and Astrophysical Thermonuclear Flames to Curvature and Stretch},
      journal = {Astrophysical Journal},
      year = {2003},
      volume = {595},
      pages = {955-979},
      doi = {http://dx.doi.org/10.1086/377433}
    }
    
    Dwarkadas, V., Plewa, T., Weirs, G., Tomkins, C. & Marr-Lyon, M. Simulation of Vortex--Dominated Flows Using the FLASH Code 2005
    Vol. 41Adaptive Mesh Refinement -- Theory and Applications 
    inproceedings  
    BibTeX:
    @inproceedings{Dwarkadas2004,
      author = {Dwarkadas, V. and Plewa, T. and Weirs, G. and Tomkins, C. and Marr-Lyon, M.},
      title = {Simulation of Vortex--Dominated Flows Using the FLASH Code},
      booktitle = {Adaptive Mesh Refinement -- Theory and Applications},
      publisher = {Springer},
      year = {2005},
      volume = {41},
      note = {Proceedings of the Chicago Workshop on Adaptive Mesh Refinement Methods, September 3--5, 2003}
    }
    
    Edgar, R.G. An alternative approach to viscosity in an accretion disc 2006 Monthly Notices of the RAS, submitted  article  
    BibTeX:
    @article{Edgar2006,
      author = {Edgar, R.~G.},
      title = {An alternative approach to viscosity in an accretion disc},
      journal = {Monthly Notices of the RAS, submitted},
      year = {2006}
    }
    
    Edgar, R.G., Gawryszczak, A. & Walch, S. Self-Gravity Troubles with Adaptive Mesh Refinement 2005 Protostars and Planets V, pp. 8005-+  inproceedings  
    BibTeX:
    @inproceedings{Edgar2005,
      author = {Edgar, R.~G. and Gawryszczak, A. and Walch, S.},
      title = {Self-Gravity Troubles with Adaptive Mesh Refinement},
      booktitle = {Protostars and Planets V},
      year = {2005},
      pages = {8005-+}
    }
    
    Edgar, R.G., Nordhaus, J., Blackman, E.G. & Frank, A. The Formation of Crystalline Dust in AGB Winds from Binary-induced Spiral Shocks 2008 Astrophysical Journal, Letters
    Vol. 675, pp. L101-L104 
    article DOI  
    BibTeX:
    @article{Edgar2008,
      author = {Edgar, R.~G. and Nordhaus, J. and Blackman, E.~G. and Frank, A.},
      title = {The Formation of Crystalline Dust in AGB Winds from Binary-induced Spiral Shocks},
      journal = {Astrophysical Journal, Letters},
      year = {2008},
      volume = {675},
      pages = {L101-L104},
      doi = {http://dx.doi.org/10.1086/533436}
    }
    
    Edgar, R.G. & Quillen, A.C. The vertical structure of planet-induced gaps in protoplanetary discs 2008 Monthly Notices of the RAS
    Vol. 387, pp. 387-396 
    article DOI  
    BibTeX:
    @article{Edgar2008a,
      author = {Edgar, R.~G. and Quillen, A.~C.},
      title = {The vertical structure of planet-induced gaps in protoplanetary discs},
      journal = {Monthly Notices of the RAS},
      year = {2008},
      volume = {387},
      pages = {387-396},
      doi = {http://dx.doi.org/10.1111/j.1365-2966.2008.13242.x}
    }
    
    van Eerten, H., van der Horst, A. & MacFadyen, A. Gamma-ray burst afterglow broadband fitting based directly on hydrodynamics simulations 2012 The Astrophysical Journal
    Vol. 749(1), pp. 44 
    article  
    BibTeX:
    @article{van2012gamma,
      author = {van Eerten, H. and van der Horst, A. and MacFadyen, A.},
      title = {Gamma-ray burst afterglow broadband fitting based directly on hydrodynamics simulations},
      journal = {The Astrophysical Journal},
      publisher = {IOP Publishing},
      year = {2012},
      volume = {749},
      number = {1},
      pages = {44}
    }
    
    van Eerten, H. & MacFadyen, A. Gamma-ray burst afterglow light curves from a Lorentz-boosted simulation frame and the shape of the jet break 2013 The Astrophysical Journal
    Vol. 767(2), pp. 141 
    article  
    BibTeX:
    @article{van2013gamma,
      author = {van Eerten, Hendrik and MacFadyen, Andrew},
      title = {Gamma-ray burst afterglow light curves from a Lorentz-boosted simulation frame and the shape of the jet break},
      journal = {The Astrophysical Journal},
      publisher = {IOP Publishing},
      year = {2013},
      volume = {767},
      number = {2},
      pages = {141}
    }
    
    Ekenbäck, A., Holmström, M., Barabash, S. & Gunell, H. Energetic neutral atom imaging of comets 2008 Geophysical Research Letters
    Vol. 35(5), pp. L05103 
    article  
    BibTeX:
    @article{ekenback2008energetic,
      author = {Ekenbäck, A. and Holmström, M. and Barabash, S. and Gunell, H.},
      title = {Energetic neutral atom imaging of comets},
      journal = {Geophysical Research Letters},
      publisher = {American Geophysical Union},
      year = {2008},
      volume = {35},
      number = {5},
      pages = {L05103}
    }
    
    Ekenbäck, A., Holmström, M., Wurz, P., Grießmeier, J., Lammer, H., Selsis, F. & Penz, T. Energetic neutral atoms around HD 209458b: Estimations of magnetospheric properties 2010 The Astrophysical Journal
    Vol. 709, pp. 670 
    article  
    BibTeX:
    @article{ekenback2010energetic,
      author = {Ekenbäck, A. and Holmström, M. and Wurz, P. and Grießmeier, J.M. and Lammer, H. and Selsis, F. and Penz, T.},
      title = {Energetic neutral atoms around HD 209458b: Estimations of magnetospheric properties},
      journal = {The Astrophysical Journal},
      publisher = {IOP Publishing},
      year = {2010},
      volume = {709},
      pages = {670}
    }
    
    Ekenbäck, A. & Holmström, M. MHD modeling of the interaction between the solar wind and solar system objects 2006 Lecture Notes in Computer Science
    Vol. 3732, pp. 554-562 
    article  
    BibTeX:
    @article{Ekenbak2005,
      author = {Ekenbäck, Andreas and Holmström, Mats},
      title = {MHD modeling of the interaction between the solar wind and solar system objects},
      journal = {Lecture Notes in Computer Science},
      year = {2006},
      volume = {3732},
      pages = {554-562}
    }
    
    Escala, A. On the Fueling of Massive Black Holes and the Properties of Their Host Spheroids 2006 Astrophysical Journal, Letters
    Vol. 648, pp. L13-L16 
    article DOI  
    BibTeX:
    @article{Escala2006,
      author = {Escala, A.},
      title = {On the Fueling of Massive Black Holes and the Properties of Their Host Spheroids},
      journal = {Astrophysical Journal, Letters},
      year = {2006},
      volume = {648},
      pages = {L13-L16},
      doi = {http://dx.doi.org/10.1086/507988}
    }
    
    Falta, D. & Fisher, R. Stochastic gravitational wave background from the single-degenerate channel of type Ia supernovae 2011 prd
    Vol. 84(12), pp. 124062 
    article DOI  
    BibTeX:
    @article{2011PhRvD..84l4062F,
      author = {Falta, D. and Fisher, R.},
      title = {Stochastic gravitational wave background from the single-degenerate channel of type Ia supernovae},
      journal = {prd},
      year = {2011},
      volume = {84},
      number = {12},
      pages = {124062},
      doi = {http://dx.doi.org/10.1103/PhysRevD.84.124062}
    }
    
    Falta, D., Fisher, R. & Khanna, G. Gravitational Wave Emission from the Single-Degenerate Channel of Type Ia Supernovae 2011 Physical Review Letters
    Vol. 106(20), pp. 201103 
    article DOI  
    BibTeX:
    @article{2011PhRvL.106t1103F,
      author = {Falta, D. and Fisher, R. and Khanna, G.},
      title = {Gravitational Wave Emission from the Single-Degenerate Channel of Type Ia Supernovae},
      journal = {Physical Review Letters},
      year = {2011},
      volume = {106},
      number = {20},
      pages = {201103},
      doi = {http://dx.doi.org/10.1103/PhysRevLett.106.201103}
    }
    
    Falzone, C., Chan, A., Lusk, E. & Gropp, W. Collective Error Detection for MPI Collective Operations 2005 Recent Advances in Parallel Virtual Machine and Message Passing Interface, pp. 138-147  inproceedings  
    BibTeX:
    @inproceedings{Falzone2005,
      author = {Falzone, C. and Chan, A. and Lusk, E. and Gropp, W.},
      title = {Collective Error Detection for MPI Collective Operations},
      booktitle = {Recent Advances in Parallel Virtual Machine and Message Passing Interface},
      publisher = {Springer},
      year = {2005},
      pages = {138--147}
    }
    
    Farley, D.R., Shigemori, K. & Azechi, H. Laser-produced blast wave and numerical simulation using the FLASH code 2005 Laser and Particle Beams
    Vol. 23, pp. 513-519 
    article  
    BibTeX:
    @article{Farley2005,
      author = {Farley, D.~R. and Shigemori, K. and Azechi, H.},
      title = {Laser-produced blast wave and numerical simulation using the FLASH code},
      journal = {Laser and Particle Beams},
      year = {2005},
      volume = {23},
      pages = {513-519}
    }
    
    Fatemi, S., Holmström, M. & Futaana, Y. The effects of lunar surface plasma absorption and solar wind temperature anisotropies on the solar wind proton velocity space distributions in the low-altitude lunar plasma wake 2012 Journal of Geophysical Research: Space Physics (1978--2012)
    Vol. 117(A10) 
    article  
    BibTeX:
    @article{fatemi2012effects,
      author = {Fatemi, S. and Holmström, M. and Futaana, Y.},
      title = {The effects of lunar surface plasma absorption and solar wind temperature anisotropies on the solar wind proton velocity space distributions in the low-altitude lunar plasma wake},
      journal = {Journal of Geophysical Research: Space Physics (1978--2012)},
      publisher = {Wiley Online Library},
      year = {2012},
      volume = {117},
      number = {A10}
    }
    
    Fatenejad, M., Bell, A.R., Benuzzi-Mounaix, A., Crowston, R., Drake, R.P., Flocke, N., Gregori, G., Koenig, M., Krauland, C., Lamb, D., Lee, D., Marques, J.R., Meinecke, J., Miniati, F., Murphy, C.D., Park, H.-S., Pelka, A., Ravasio, A., Remington, B., Reville, B., Scopatz, A., Tzeferacos, P., Weide, K., Woolsey, N., Young, R. & Yurchak, R. Modeling HEDLA magnetic field generation experiments on laser facilities 2013 High Energy Density Physics
    Vol. 9(1), pp. 172-177 
    article DOI URL 
    Abstract: The Flash Center is engaged in a collaboration to simulate laser driven experiments aimed at understanding the generation and amplification of cosmological magnetic fields using the FLASH code. In these experiments a laser illuminates a solid plastic or graphite target launching an asymmetric blast wave into a chamber which contains either Helium or Argon at millibar pressures. Induction coils placed several centimeters away from the target detect large scale magnetic fields on the order of tens to hundreds of Gauss. The time dependence of the magnetic field is consistent with generation via the Biermann battery mechanism near the blast wave. Attempts to perform simulations of these experiments using the FLASH code have uncovered previously unreported numerical difficulties in modeling the Biermann battery mechanism near shock waves which can lead to the production of large non-physical magnetic fields. We report on these difficulties and offer a potential solution.
    BibTeX:
    @article{Fatenejad2013172,
      author = {M. Fatenejad and A. R. Bell and A. Benuzzi-Mounaix and R. Crowston and R. Paul Drake and N. Flocke and G. Gregori and M. Koenig and C. Krauland and D. Lamb and D. Lee and J. R. Marques and J. Meinecke and F. Miniati and C. D. Murphy and H.-S. Park and A. Pelka and A. Ravasio and B. Remington and B. Reville and A. Scopatz and P. Tzeferacos and K. Weide and N. Woolsey and R. Young and R. Yurchak},
      title = {Modeling HEDLA magnetic field generation experiments on laser facilities},
      journal = {High Energy Density Physics},
      year = {2013},
      volume = {9},
      number = {1},
      pages = {172-177},
      url = {http://www.sciencedirect.com/science/article/pii/S1574181812001280},
      doi = {http://dx.doi.org/10.1016/j.hedp.2012.11.002}
    }
    
    Fatenejad, M., Fryxell, B., Wohlbier, J., Myra, E., Lamb, D., Fryer, C. & Graziani, C. Collaborative comparison of simulation codes for high-energy-density physics applications 2013 High Energy Density Physics
    Vol. 9(1), pp. 63 - 66 
    article DOI URL 
    BibTeX:
    @article{Fatenejad201363,
      author = {M. Fatenejad and B. Fryxell and J. Wohlbier and E. Myra and D. Lamb and C. Fryer and C. Graziani},
      title = {Collaborative comparison of simulation codes for high-energy-density physics applications},
      journal = {High Energy Density Physics},
      year = {2013},
      volume = {9},
      number = {1},
      pages = {63 - 66},
      url = {http://www.sciencedirect.com/science/article/pii/S1574181812001206},
      doi = {http://dx.doi.org/10.1016/j.hedp.2012.10.004}
    }
    
    Federrath, C. On the universality of supersonic turbulence 2013 Monthly Notices of the Royal Astronomical Society
    Vol. 436(2), pp. 1245-1257 
    article DOI URL 
    Abstract: Compressible turbulence shapes the structure of the interstellar medium of our Galaxy and likely plays an important role also during structure formation in the early Universe. The density probability distribution function (PDF) and the power spectrum of such compressible, supersonic turbulence are the key ingredients for theories of star formation. However, both the PDF and the spectrum are still a matter of debate, because theoretical predictions are limited and simulations of supersonic turbulence require enormous resolutions to capture the inertial-range scaling. To advance our limited knowledge of compressible turbulence, we here present and analyse the world's largest simulations of supersonic turbulence. We compare hydrodynamic models with numerical resolutions of 2563???40963 mesh points and with two distinct driving mechanisms, solenoidal (divergence-free) driving and compressive (curl-free) driving. We find convergence of the density PDF, with compressive driving exhibiting a much wider and more intermittent density distribution than solenoidal driving by fitting to a recent theoretical model for intermittent density PDFs. Analysing the power spectrum of the turbulence, we find a pure velocity scaling close to Burgers turbulence with P(v) ??? k???2 for both driving modes in our hydrodynamical simulations with Mach number $M=17$. The spectrum of the density-weighted velocity ??1/3v, however, does not provide the previously suggested universal scaling for supersonic turbulence. We find that the power spectrum P(??1/3v) scales with wavenumber as k???1.74 for solenoidal driving, close to incompressible Kolmogorov turbulence (k???5/3), but is significantly steeper with k???2.10 for compressive driving. We show that this is consistent with a recent theoretical model for compressible turbulence that predicts P(??1/3v) ??? k???19/9 in the presence of a strong $nabla ot boldsymbol v$ component as is produced by compressive driving and remains remarkably constant throughout the supersonic turbulent cascade.
    BibTeX:
    @article{federrath2013universality,
      author = {Federrath, Christoph},
      title = {On the universality of supersonic turbulence},
      journal = {Monthly Notices of the Royal Astronomical Society},
      year = {2013},
      volume = {436},
      number = {2},
      pages = {1245-1257},
      note = {arXiv preprint arXiv:1306.3989},
      url = {http://mnras.oxfordjournals.org/content/436/2/1245.abstract},
      doi = {http://dx.doi.org/10.1093/mnras/stt1644}
    }
    
    Federrath, C., Banerjee, R., Clark, P.C. & Klessen, R.S. Modeling Collapse and Accretion in Turbulent Gas Clouds: Implementation and Comparison of Sink Particles in AMR and SPH 2010 The Astrophysical Journal
    Vol. 713, pp. 269-290 
    article DOI  
    BibTeX:
    @article{2010ApJ...713..269F,
      author = {Federrath, C. and Banerjee, R. and Clark, P.~C. and Klessen, R.~S. },
      title = {Modeling Collapse and Accretion in Turbulent Gas Clouds: Implementation and Comparison of Sink Particles in AMR and SPH},
      journal = {The Astrophysical Journal},
      year = {2010},
      volume = {713},
      pages = {269-290},
      doi = {http://dx.doi.org/10.1088/0004-637X/713/1/269}
    }
    
    Federrath, C., Banerjee, R., Seifried, D., Clark, P. & Klessen, R. Implementing and comparing sink particles in AMR and SPH 2011 Proceedings of the International Astronomical Union
    Vol. 6, pp. 425 
    article  
    BibTeX:
    @article{federrath2011implementing,
      author = {Federrath, C. and Banerjee, R. and Seifried, D. and Clark, P.C. and Klessen, R.S.},
      title = {Implementing and comparing sink particles in AMR and SPH},
      journal = {Proceedings of the International Astronomical Union},
      publisher = {Cambridge Univ Press},
      year = {2011},
      volume = {6},
      pages = {425}
    }
    
    Federrath, C., Chabrier, G., Schober, J., Banerjee, R., Klessen, R.S. & Schleicher, D.R.G. Mach Number Dependence of Turbulent Magnetic Field Amplification: Solenoidal versus Compressive Flows 2011 Physical Review Letters
    Vol. 107(11), pp. 114504 
    article DOI  
    BibTeX:
    @article{2011PhRvL.107k4504F,
      author = {Federrath, C. and Chabrier, G. and Schober, J. and Banerjee, R. and Klessen, R.~S. and Schleicher, D.~R.~G.},
      title = {Mach Number Dependence of Turbulent Magnetic Field Amplification: Solenoidal versus Compressive Flows},
      journal = {Physical Review Letters},
      year = {2011},
      volume = {107},
      number = {11},
      pages = {114504},
      doi = {http://dx.doi.org/10.1103/PhysRevLett.107.114504}
    }
    
    Federrath, C., Duval, J., Klessen, R.S., Schmidt, W. & Mac Low, M.-M.. Solenoidal versus compressive turbulence forcing 2009 ArXiv e-prints  article  
    BibTeX:
    @article{2009arXiv0910.5469F,
      author = {Federrath, C. and Duval, J. and Klessen, R.~S. and Schmidt, W. and Mac Low, M.-M.},
      title = {Solenoidal versus compressive turbulence forcing},
      journal = {ArXiv e-prints},
      year = {2009}
    }
    
    Federrath, C. & Klessen, R.S. On the Star Formation Efficiency of Turbulent Magnetized Clouds 2013 apj
    Vol. 763, pp. 51 
    article DOI  
    BibTeX:
    @article{FederrathKlessen2013,
      author = {Federrath, C. and Klessen, R.~S.},
      title = {On the Star Formation Efficiency of Turbulent Magnetized Clouds},
      journal = {apj},
      year = {2013},
      volume = {763},
      pages = {51},
      doi = {http://dx.doi.org/10.1088/0004-637X/763/1/51}
    }
    
    Federrath, C. & Klessen, R.S. The Star Formation Rate of Turbulent Magnetized Clouds: Comparing Theory, Simulations, and Observations 2012 apj
    Vol. 761, pp. 156 
    article DOI  
    BibTeX:
    @article{FederrathKlessen2012,
      author = {Federrath, C. and Klessen, R.~S.},
      title = {The Star Formation Rate of Turbulent Magnetized Clouds: Comparing Theory, Simulations, and Observations},
      journal = {apj},
      year = {2012},
      volume = {761},
      pages = {156},
      doi = {http://dx.doi.org/10.1088/0004-637X/761/2/156}
    }
    
    Federrath, C., Klessen, R.S. & Schmidt, W. The Fractal Density Structure in Supersonic Isothermal Turbulence: Solenoidal Versus Compressive Energy Injection 2009 The Astrophysical Journal
    Vol. 692, pp. 364-374 
    article DOI  
    BibTeX:
    @article{2009ApJ...692..364F,
      author = {Federrath, C. and Klessen, R.~S. and Schmidt, W.},
      title = {The Fractal Density Structure in Supersonic Isothermal Turbulence: Solenoidal Versus Compressive Energy Injection},
      journal = {The Astrophysical Journal},
      year = {2009},
      volume = {692},
      pages = {364-374},
      doi = {http://dx.doi.org/10.1088/0004-637X/692/1/364}
    }
    
    Federrath, C., Klessen, R.S. & Schmidt, W. The Density Probability Distribution in Compressible Isothermal Turbulence: Solenoidal versus Compressive Forcing 2008 The Astrophysical Journal Letters
    Vol. 688, pp. L79-L82 
    article DOI  
    BibTeX:
    @article{2008ApJ...688L..79F,
      author = {Federrath, C. and Klessen, R.~S. and Schmidt, W.},
      title = {The Density Probability Distribution in Compressible Isothermal Turbulence: Solenoidal versus Compressive Forcing},
      journal = {The Astrophysical Journal Letters},
      year = {2008},
      volume = {688},
      pages = {L79-L82},
      doi = {http://dx.doi.org/10.1086/595280}
    }
    
    Federrath, C., Roman-Duval, J., Klessen, R.S., Schmidt, W. & Mac Low, M.-M. Comparing the statistics of interstellar turbulence in simulations and observations. Solenoidal versus compressive turbulence forcing 2010 Astronomy and Astrophysics
    Vol. 512, pp. A81 
    article DOI  
    BibTeX:
    @article{2010A&A...512A..81F,
      author = {Federrath, C. and Roman-Duval, J. and Klessen, R.~S. and Schmidt, W. and Mac Low, M.-M.},
      title = {Comparing the statistics of interstellar turbulence in simulations and observations. Solenoidal versus compressive turbulence forcing},
      journal = {Astronomy and Astrophysics},
      year = {2010},
      volume = {512},
      pages = {A81},
      doi = {http://dx.doi.org/10.1051/0004-6361/200912437}
    }
    
    Federrath, C., Sur, S., Schleicher, D.R.G., Banerjee, R. & Klessen, R.S. A New Jeans Resolution Criterion for (M)HD Simulations of Self-gravitating Gas: Application to Magnetic Field Amplification by Gravity-driven Turbulence 2011 The Astrophysical Journal
    Vol. 731, pp. 62 
    article DOI  
    BibTeX:
    @article{2011ApJ...731...62F,
      author = {Federrath, C. and Sur, S. and Schleicher, D.~R.~G. and Banerjee, R. and Klessen, R.~S.},
      title = {A New Jeans Resolution Criterion for (M)HD Simulations of Self-gravitating Gas: Application to Magnetic Field Amplification by Gravity-driven Turbulence},
      journal = {The Astrophysical Journal},
      year = {2011},
      volume = {731},
      pages = {62},
      doi = {http://dx.doi.org/10.1088/0004-637X/731/1/62}
    }
    
    Fernández, R. & Thompson, C. Stability of a Spherical Accretion Shock with Nuclear Dissociation 2009 The Astrophysical Journal
    Vol. 697, pp. 1827-1841 
    article DOI  
    BibTeX:
    @article{2009ApJ...697.1827F,
      author = {Fernández, R. and Thompson, C.},
      title = {Stability of a Spherical Accretion Shock with Nuclear Dissociation},
      journal = {The Astrophysical Journal},
      year = {2009},
      volume = {697},
      pages = {1827-1841},
      doi = {http://dx.doi.org/10.1088/0004-637X/697/2/1827}
    }
    
    Fernández, R. & Thompson, C. Dynamics of a Spherical Accretion Shock with Neutrino Heating and Alpha-Particle Recombination 2009 The Astrophysical Journal
    Vol. 703, pp. 1464-1485 
    article DOI  
    BibTeX:
    @article{2009ApJ...703.1464F,
      author = {Fernández, R. and Thompson, C.},
      title = {Dynamics of a Spherical Accretion Shock with Neutrino Heating and Alpha-Particle Recombination},
      journal = {The Astrophysical Journal},
      year = {2009},
      volume = {703},
      pages = {1464-1485},
      doi = {http://dx.doi.org/10.1088/0004-637X/703/2/1464}
    }
    
    Ferrari, A., Tzeferacos, P. & Zanni, C. Launching mechanisms of astrophysical jets 2009 apss
    Vol. 322, pp. 3-9 
    article DOI  
    BibTeX:
    @article{Ferrari2009,
      author = {Ferrari, A. and Tzeferacos, P. and Zanni, C.},
      title = {Launching mechanisms of astrophysical jets},
      journal = {apss},
      year = {2009},
      volume = {322},
      pages = {3-9},
      doi = {http://dx.doi.org/10.1007/s10509-009-9984-y}
    }
    
    Ferreira, J. & Zanni, C. On some MHD aspects of star-disc-jets systems 2007 Memorie della Societa Astronomica Italiana
    Vol. 78, pp. 348-+ 
    article  
    BibTeX:
    @article{Ferreira2007,
      author = {Ferreira, J. and Zanni, C.},
      title = {On some MHD aspects of star-disc-jets systems},
      journal = {Memorie della Societa Astronomica Italiana},
      year = {2007},
      volume = {78},
      pages = {348-+}
    }
    
    Fields, B.D., Athanassiadou, T. & Johnson, S.R. Supernova Collisions with the Heliosphere 2008 Astrophysical Journal
    Vol. 678, pp. 549-562 
    article DOI  
    BibTeX:
    @article{Fields2008,
      author = {Fields, B.~D. and Athanassiadou, T. and Johnson, S.~R.},
      title = {Supernova Collisions with the Heliosphere},
      journal = {Astrophysical Journal},
      year = {2008},
      volume = {678},
      pages = {549-562},
      doi = {http://dx.doi.org/10.1086/523622}
    }
    
    Finoguenov, A., Ruszkowski, M., Jones, C., Brüggen, M., Vikhlinin, A. & Mandel, E. In-depth Chandra study of the AGN feedback in Virgo elliptical galaxy M84 2008 Astrophysical Journal
    Vol. 807 
    article  
    BibTeX:
    @article{Finoguenov2008,
      author = {Finoguenov, A. and Ruszkowski, M. and Jones, C. and Brüggen, M. and Vikhlinin, A. and Mandel, E.},
      title = {In-depth Chandra study of the AGN feedback in Virgo elliptical galaxy M84},
      journal = {Astrophysical Journal},
      year = {2008},
      volume = {807},
      note = {in press, arXiv:0807.3338v1}
    }
    
    Fisher, R., Abarzhi, S., Antypas, K., Asida, S., Calder, A., Cattaneo, F., Constantin, P., Dubey, A., Foster, I., Gallagher, J., Ganapathy, M., Glendenin, C., Kadanoff, L., Lamb, D., Needham, S., Papka, M., Plewa, T., Reid, L., Rich, P., Riley, K. & Sheeler, D. Terascale Turbulence Computation on BG/L Using the FLASH3 Code 2008 IBM Journal of Research and Development
    Vol. 52(1/2), pp. 127-137 
    article  
    BibTeX:
    @article{Fisher2008,
      author = {Fisher, R. and Abarzhi, S. and Antypas, K. and Asida, S.M. and Calder, A.C. and Cattaneo, F. and Constantin, P. and Dubey, A. and Foster, I. and Gallagher, J.B. and Ganapathy, M.K. and Glendenin, C.C. and Kadanoff, L. and Lamb, D.Q. and Needham, S. and Papka, M. and Plewa, T. and Reid, L.B. and Rich, P. and Riley, K. and Sheeler, D.},
      title = {Terascale Turbulence Computation on BG/L Using the FLASH3 Code},
      journal = {IBM Journal of Research and Development},
      year = {2008},
      volume = {52},
      number = {1/2},
      pages = {127--137},
      note = {Special issue on ``Applications of Massively Parallel Systems"}
    }
    
    Fitzpatrick, R., Bhattacharjee, A., Ma, Z.-W. & Linde, T. Wave driven magnetic reconnection in the Taylor problem 2003 Physics of Plasmas
    Vol. 10, pp. 4284-+ 
    article  
    BibTeX:
    @article{Fitzpatrick2003,
      author = {Fitzpatrick, R. and Bhattacharjee, A. and Ma, Z.-W. and Linde, T.},
      title = {Wave driven magnetic reconnection in the Taylor problem},
      journal = {Physics of Plasmas},
      year = {2003},
      volume = {10},
      pages = {4284-+}
    }
    
    Fowler, R., Adhianto, L., de Supinski, B., Fagan, M., Gamblin, T., Krentel, M., Mellor-Crummey, J., Schulz, M. & Tallent, N. Frontiers of performance analysis on leadership-class systems 2009 Journal of Physics: Conference Series
    Vol. 180, pp. 012041 (6pp) 
    article DOI URL 
    Abstract: The number of cores in high-end systems for scientific computing are employingis increasing rapidly. As a result, there is an pressing need for tools that can measure, model, and diagnose performance problems in highly-parallel runs. We describe two tools that employ complementary approaches for analysis at scale and we illustrate their use on DOE leadership-class systems.
    BibTeX:
    @article{Fowler2009,
      author = {R Fowler and L Adhianto and B de Supinski and M Fagan and T Gamblin and M Krentel and J Mellor-Crummey and M Schulz and N Tallent},
      title = {Frontiers of performance analysis on leadership-class systems},
      journal = {Journal of Physics: Conference Series},
      year = {2009},
      volume = {180},
      pages = {012041 (6pp)},
      url = {http://stacks.iop.org/1742-6596/180/012041},
      doi = {http://dx.doi.org/10.1088/1742-6596/180/1/012041}
    }
    
    Frankel, M., Gordon, P. & Sivashinsky, G. On disintegration of near-limit cellular flames 2003 Physics Letters A
    Vol. 310(5-6), pp. 389-392 
    article  
    BibTeX:
    @article{Frankel2003,
      author = {Frankel, M.L. and Gordon, P.V. and Sivashinsky, G.I.},
      title = {On disintegration of near-limit cellular flames},
      journal = {Physics Letters A},
      publisher = {Elsevier BV},
      year = {2003},
      volume = {310},
      number = {5-6},
      pages = {389--392}
    }
    
    Friedman, S., Heinz, S. & Churazov, E. All Curled up: A Numerical Investigation of Shock-Bubble Interactions and the Role of Vortices in Heating Galaxy Clusters 2012 The Astrophysical Journal
    Vol. 746, pp. 112 
    article  
    BibTeX:
    @article{friedman2012all,
      author = {Friedman, S.H. and Heinz, S. and Churazov, E.},
      title = {All Curled up: A Numerical Investigation of Shock-Bubble Interactions and the Role of Vortices in Heating Galaxy Clusters},
      journal = {The Astrophysical Journal},
      publisher = {IOP Publishing},
      year = {2012},
      volume = {746},
      pages = {112}
    }
    
    Frings, W., Hermanns, M., Mohr, B. & Orth, B. Report on the Jülich Blue Gene/L Scaling Workshop 2006 2007 (FZJ-ZAM-IB-2007-02)  techreport  
    BibTeX:
    @techreport{Frings2007,
      author = {Frings, W. and Hermanns, M.A. and Mohr, B. and Orth, B.},
      title = {Report on the Jülich Blue Gene/L Scaling Workshop 2006},
      year = {2007},
      number = {FZJ-ZAM-IB-2007-02}
    }
    
    Fryer, C., Brown, P., Bufano, F., Dahl, J., Fontes, C., Frey, L., Holland, S., Hungerford, A., Immler, S., Mazzali, P. & others Spectra and Light Curves of Failed Supernovae 2009 The Astrophysical Journal
    Vol. 707, pp. 193 
    article  
    BibTeX:
    @article{fryer2009spectra,
      author = {Fryer, C.L. and Brown, P.J. and Bufano, F. and Dahl, J.A. and Fontes, C.J. and Frey, L.H. and Holland, S.T. and Hungerford, A.L. and Immler, S. and Mazzali, P. and others},
      title = {Spectra and Light Curves of Failed Supernovae},
      journal = {The Astrophysical Journal},
      publisher = {IOP Publishing},
      year = {2009},
      volume = {707},
      pages = {193}
    }
    
    Fryer, C., Rockefeller, G., Timmes, F. & Hungerford, A. Open Issues in Core Collapse Supernova Theory 2005 , pp. 136-155  inbook  
    BibTeX:
    @inbook{Fryer2005,
      author = {Fryer, CL and Rockefeller, G. and Timmes, FX and Hungerford, AL},
      title = {Open Issues in Core Collapse Supernova Theory},
      publisher = {World Scientific},
      year = {2005},
      pages = {136--155}
    }
    
    Fryer, C., Ruiter, A., Belczynski, K., Brown, P., Bufano, F., Diehl, S., Fontes, C., Frey, L., Holland, S., Hungerford, A. & others Spectra of Type Ia Supernovae from Double Degenerate Mergers 2010 The Astrophysical Journal
    Vol. 725, pp. 296 
    article  
    BibTeX:
    @article{fryer2010spectra,
      author = {Fryer, C.L. and Ruiter, A.J. and Belczynski, K. and Brown, P.J. and Bufano, F. and Diehl, S. and Fontes, C.J. and Frey, L.H. and Holland, S.T. and Hungerford, A.L. and others},
      title = {Spectra of Type Ia Supernovae from Double Degenerate Mergers},
      journal = {The Astrophysical Journal},
      publisher = {IOP Publishing},
      year = {2010},
      volume = {725},
      pages = {296}
    }
    
    Fryer, C.L., Brown, P.J., Bufano, F., Dahl, J.A., Fontes, C.J., Frey, L.H., Holland, S.T., Hungerford, A.L., Immler, S., Mazzali, P., Milne, P.A., Scannapieco, E., Weinberg, N. & Young, P.A. SPECTRA AND LIGHT CURVES OF FAILED SUPERNOVAE 2009 The Astrophysical Journal
    Vol. 707(1), pp. 193 
    article URL 
    Abstract: Astronomers have proposed a number of mechanisms to produce supernova explosions. Although many of these mechanisms are now not considered primary engines behind supernovae (SNe), they do produce transients that will be observed by upcoming ground-based surveys and NASA satellites. Here, we present the first radiation-hydrodynamics calculations of the spectra and light curves from three of these "failed" SNe: SNe with considerable fallback, accretion-induced collapse of white dwarfs, and energetic helium flashes (also known as type Ia SNe).
    BibTeX:
    @article{Fryer2009,
      author = {Chris L. Fryer and Peter J. Brown and Filomena Bufano and Jon A. Dahl and Christopher J. Fontes and Lucille H. Frey and Stephen T. Holland and Aimee L. Hungerford and Stefan Immler and Paolo Mazzali and Peter A. Milne and Evan Scannapieco and Nevin Weinberg and Patrick A. Young},
      title = {SPECTRA AND LIGHT CURVES OF FAILED SUPERNOVAE},
      journal = {The Astrophysical Journal},
      year = {2009},
      volume = {707},
      number = {1},
      pages = {193},
      url = {http://stacks.iop.org/0004-637X/707/i=1/a=193}
    }
    
    Fryxell, B., Calder, A.C., Dursi, L.J., Lamb, D.Q., MacNeice, P., Olson, K., Ricker, P., Rosner, R., Timmes, F.X. & Truran, J.W. Adaptive mesh simulations of astrophysical detonations using the ASCI Flash code 2001
    Vol. 583Advanced computing and analysis techniques in physics research, pp. 223-225 
    inproceedings  
    BibTeX:
    @inproceedings{Fryxell2001a,
      author = {Fryxell, B. and Calder, A. C. and Dursi, L. J. and Lamb, D. Q. and MacNeice, P. and Olson, K. and Ricker, P. and Rosner, R. and Timmes, F. X. and Truran, J. W.},
      title = {Adaptive mesh simulations of astrophysical detonations using the ASCI Flash code},
      booktitle = {Advanced computing and analysis techniques in physics research},
      year = {2001},
      volume = {583},
      pages = {223--225},
      note = {VII International Workshop; ACAT 2000. AIP Conference Proceedings}
    }
    
    Fryxell, B., Kuranz, C., Drake, R.P., Grosskopf, M., Budde, A., Plewa, T., Hearn, N., Hansen, J., Miles, A. & Knauer, J. The possible effects of magnetic fields on laser experiments of Rayleigh-Taylor instabilities 2010 High Energy Density Physics
    Vol. 6(2), pp. 162-165 
    article  
    BibTeX:
    @article{fryxell2010possible,
      author = {Fryxell, B. and Kuranz, CC and Drake, R. Paul and Grosskopf, MJ and Budde, A. and Plewa, T. and Hearn, N. and Hansen, JF and Miles, AR and Knauer, J.},
      title = {The possible effects of magnetic fields on laser experiments of Rayleigh-Taylor instabilities},
      journal = {High Energy Density Physics},
      publisher = {Elsevier},
      year = {2010},
      volume = {6},
      number = {2},
      pages = {162--165}
    }
    
    Fryxell, B., Olson, K., Ricker, P., Timmes, F.X., Zingale, M., Lamb, D.Q., MacNeice, P., Rosner, R., Truran, J.W. & Tufo, H. FLASH: An Adaptive Mesh Hydrodynamics Code for Modeling Astrophysical Thermonuclear Flashes 2000 Astrophysical Journal, Supplement
    Vol. 131, pp. 273-334 
    article DOI  
    BibTeX:
    @article{Fryxell2000,
      author = {Fryxell, B. and Olson, K. and Ricker, P. and Timmes, F.~X. and Zingale, M. and Lamb, D.~Q. and MacNeice, P. and Rosner, R. and Truran, J.~W. and Tufo, H.},
      title = {FLASH: An Adaptive Mesh Hydrodynamics Code for Modeling Astrophysical Thermonuclear Flashes},
      journal = {Astrophysical Journal, Supplement},
      year = {2000},
      volume = {131},
      pages = {273-334},
      doi = {http://dx.doi.org/10.1086/317361}
    }
    
    Fryxell, B., Zingale, M., Timmes, F.X., Lamb, D.Q., Olson, K., Calder, A.C., Dursi, L.J., Ricker, P. & Rosner, R. Helium Detonations on Neutron Stars 2000 Proceedings of the 10th Workshop on Nuclear Astrophysics : Ringberg Castle, Tegernsee, Germany, March 20 - 25, 2000, pp. 38-+  inproceedings  
    Abstract: We present the results of a numerical study of helium detonations on the surfaces of neutron stars. We describe two-dimensional simulations of the evolution of a detonation as it breaks through the accreted envelope of the neutron star and propagates laterally through the accreted material. The detonation front propagates laterally at nearly the Chapman-Jouguet velocity, v=1.3???09 cm s-1. A series of surface waves propagate across the pool of hot ash behind the detonation front with the same speed, matching the speed expected from shallow water wave theory. The entire envelope oscillates in the gravitational potential well of the neutron star with a period of sim50 mus. The photosphere reaches an estimated height of 10 km above the surface of the neutron star. Our study confirms that such a detonation can insure the spread of burning over the entire neutron star surface on a timescale consistent with burst rise times. We analyze the sensitivity of the results to the spatial resolution and the assumed initial conditions. We conclude by presenting a comparison of this model to type I X-ray bursts.
    BibTeX:
    @inproceedings{Fryxell2000c,
      author = {Fryxell, B. and Zingale, M. and Timmes, F.~X. and Lamb, D.~Q. and Olson, K. and Calder, A.~C. and Dursi, L.~J. and Ricker, P. and Rosner, R.},
      title = {Helium Detonations on Neutron Stars},
      booktitle = {Proceedings of the 10th Workshop on Nuclear Astrophysics : Ringberg Castle, Tegernsee, Germany, March 20 - 25, 2000},
      year = {2000},
      pages = {38-+}
    }
    
    Fryxell, B., Zingale, M., Timmes, F.X., Lamb, D.Q., Olson, K., Calder, A.C., Dursi, L.J., Ricker, P., Rosner, R., Truran, J.W., MacNeice, P. & Tufo, H. Numerical simulations of thermonuclear flashes on neutron stars 2001 Nuclear Physics A
    Vol. 688, pp. 172-176 
    article  
    BibTeX:
    @article{Fryxell2001,
      author = {Fryxell, B. and Zingale, M. and Timmes, F.~X. and Lamb, D.~Q. and Olson, K. and Calder, A.~C. and Dursi, L.~J. and Ricker, P. and Rosner, R. and Truran, J.~W. and MacNeice, P. and Tufo, H.},
      title = {Numerical simulations of thermonuclear flashes on neutron stars},
      journal = {Nuclear Physics A},
      year = {2001},
      volume = {688},
      pages = {172-176}
    }
    
    Fu, W., Liang, E.P., Fatenejad, M., Lamb, D.Q., Grosskopf, M., Park, H.-S., Remington, B. & Spitkovsky, A. Increase of the density, temperature and velocity of plasma jets driven by a ring of high energy laser beams 2013 High Energy Density Physics  article  
    BibTeX:
    @article{fu2013increase,
      author = {Fu, Wen and Liang, Edison P and Fatenejad, Milad and Lamb, Donald Q and Grosskopf, Michael and Park, Hye-Sook and Remington, Bruce and Spitkovsky, Anatoly},
      title = {Increase of the density, temperature and velocity of plasma jets driven by a ring of high energy laser beams},
      journal = {High Energy Density Physics},
      publisher = {Elsevier},
      year = {2013}
    }
    
    Galván-Madrid, R., Peters, T., Keto, E.R., Mac Low, M.-M., Banerjee, R. & Klessen, R.S. Time variability in simulated ultracompact and hypercompact H II regions 2011 Monthly Notices of the RAS
    Vol. 416, pp. 1033-1044 
    article DOI  
    BibTeX:
    @article{2011MNRAS.416.1033G,
      author = {Galván-Madrid, R. and Peters, T. and Keto, E. R. and Mac Low, M.-M. and Banerjee, R. and Klessen, R. S.},
      title = {Time variability in simulated ultracompact and hypercompact H II regions},
      journal = {Monthly Notices of the RAS},
      year = {2011},
      volume = {416},
      pages = {1033-1044},
      doi = {http://dx.doi.org/10.1111/j.1365-2966.2011.19101.x}
    }
    
    Galván-Madrid, R., Peters, T., Keto, E.R., Mac Low, M.-M., Banerjee, R. & Klessen, R.S. Time Variability in Simulated Ultracompact and Hypercompact H II Regions 2011
    Vol. 40Revista Mexicana de Astronomia y Astrofisica Conference Series, pp. 273-273 
    inproceedings  
    BibTeX:
    @inproceedings{2011RMxAC..40..273G,
      author = {Galván-Madrid, R. and Peters, T. and Keto, E.~R. and Mac Low, M.-M. and Banerjee, R. and Klessen, R.~S.},
      title = {Time Variability in Simulated Ultracompact and Hypercompact H II Regions},
      booktitle = {Revista Mexicana de Astronomia y Astrofisica Conference Series},
      year = {2011},
      volume = {40},
      pages = {273-273}
    }
    
    Gao, K., Liao, W., Choudhary, A., Ross, R. & Latham, R. Combining I/O operations for multiple array variables in parallel netCDF 2009 Cluster Computing and Workshops, 2009. CLUSTER'09. IEEE International Conference on, pp. 1-10  inproceedings  
    BibTeX:
    @inproceedings{gao2009combining,
      author = {Gao, K. and Liao, W. and Choudhary, A. and Ross, R. and Latham, R.},
      title = {Combining I/O operations for multiple array variables in parallel netCDF},
      booktitle = {Cluster Computing and Workshops, 2009. CLUSTER'09. IEEE International Conference on},
      year = {2009},
      pages = {1--10}
    }
    
    Gao, K., Liao, W., Nisar, A., Choudhary, A., Ross, R. & Latham, R. Using subfiling to improve programming flexibility and performance of parallel shared-file i/o 2009 Parallel Processing, 2009. ICPP'09. International Conference on, pp. 470-477  inproceedings  
    BibTeX:
    @inproceedings{gao2009using,
      author = {Gao, K. and Liao, W. and Nisar, A. and Choudhary, A. and Ross, R. and Latham, R.},
      title = {Using subfiling to improve programming flexibility and performance of parallel shared-file i/o},
      booktitle = {Parallel Processing, 2009. ICPP'09. International Conference on},
      year = {2009},
      pages = {470--477}
    }
    
    Garcia Blas, J., Isaila, F., Carretero, J., Singh, D. & Garcia-Carballeira, F. Implementation and Evaluation of File Write-Back and Prefetching for MPI-IO Over GPFS 2010 International Journal of High Performance Computing Applications
    Vol. 24(1), pp. 78-92 
    article  
    BibTeX:
    @article{garcia2010implementation,
      author = {Garcia Blas, J. and Isaila, F. and Carretero, J. and Singh, D. and Garcia-Carballeira, F.},
      title = {Implementation and Evaluation of File Write-Back and Prefetching for MPI-IO Over GPFS},
      journal = {International Journal of High Performance Computing Applications},
      publisher = {SAGE Publications},
      year = {2010},
      volume = {24},
      number = {1},
      pages = {78--92}
    }
    
    García, L., Isaila, F., Carballeira, F., Perez, J., Rabenseifner, R., Adamidis, P. & Sánchez-García Computational Science and Its Applications - ICCSA 2006 2006
    Vol. 3984/2006, pp. 108-117 
    inbook DOI  
    BibTeX:
    @inbook{Garc'ia2006,
      author = {García, L.M.S. and Isaila, F.D. and Carballeira, F.G. and Perez, J.C. and Rabenseifner, R. and Adamidis, P. and Sánchez-García,},
      title = {Computational Science and Its Applications - ICCSA 2006},
      publisher = {Springer Berlin/ Heidelberg},
      year = {2006},
      volume = {3984/2006},
      pages = {108--117},
      doi = {http://dx.doi.org/10.1007/11751649}
    }
    
    Gardini, A. Buoyant bubbles in a cooling intracluster medium. I. Hydrodynamic bubbles 2007 Astronomy and Astrophysics
    Vol. 464, pp. 143-154 
    article DOI  
    Abstract: Over the past several years, numerous examples of X-ray cavities coincident with radio sources have been observed in so-called "cool core" clusters of galaxies. Motivated by these observations, we explore the evolution and the effect of cavities on a cooling intracluster medium (ICM) numerically, adding relevant physics step by step. In this paper we present a first set of hydrodynamical, high resolution (1024^3 effective grid elements), three-dimensional simulations, together with two-dimensional test cases. The simulations follow the evolution of radio cavities, modeled as bubbles filled by relativistic plasma, in the cluster atmosphere while the ICM is subject to cooling. We find that the bubble rise retards the development of a cooling flow by inducing motions in the ICM which repeatedly displace the material in the core. Even bubbles initially set significantly far from the cluster center affect the cooling flow, although much later than the beginning of the simulation. The effect is, however, modest: the cooling time is increased by at most only 25%. As expected, the overall evolution of pure hydrodynamic bubbles is at odds with observations, showing that some additional physics has to be considered in order to match the data.
    BibTeX:
    @article{Gardini2007,
      author = {Gardini, A.},
      title = {Buoyant bubbles in a cooling intracluster medium. I. Hydrodynamic bubbles},
      journal = {Astronomy and Astrophysics},
      year = {2007},
      volume = {464},
      pages = {143-154},
      doi = {http://dx.doi.org/10.1051/0004-6361:20066427}
    }
    
    Gaspari, M. & Churazov, E. Constraining turbulence and conduction in the hot ICM through density perturbations 2013 arXiv preprint arXiv:1307.4397  article  
    BibTeX:
    @article{gaspari2013constraining,
      author = {Gaspari, M. and Churazov, E.},
      title = {Constraining turbulence and conduction in the hot ICM through density perturbations},
      journal = {arXiv preprint arXiv:1307.4397},
      year = {2013}
    }
    
    Gaspari, M., Melioli, C., Brighenti, F. & D'Ercole, A. The Dance of Heating and Cooling in Galaxy Clusters: 3D Simulations of Self-Regulated AGN Outflows 2010 Arxiv preprint arXiv:1007.0674  article  
    BibTeX:
    @article{gaspari2010dance,
      author = {Gaspari, M. and Melioli, C. and Brighenti, F. and D'Ercole, A.},
      title = {The Dance of Heating and Cooling in Galaxy Clusters: 3D Simulations of Self-Regulated AGN Outflows},
      journal = {Arxiv preprint arXiv:1007.0674},
      year = {2010}
    }
    
    Gaspari, M., Ruszkowski, M. & Oh, S.P. Chaotic cold accretion on to black holes 2013 Monthly Notices of the Royal Astronomical Society
    Vol. 432(4), pp. 3401-3422 
    article  
    BibTeX:
    @article{gaspari2013chaotic,
      author = {Gaspari, M and Ruszkowski, M and Oh, S Peng},
      title = {Chaotic cold accretion on to black holes},
      journal = {Monthly Notices of the Royal Astronomical Society},
      publisher = {Oxford University Press},
      year = {2013},
      volume = {432},
      number = {4},
      pages = {3401--3422}
    }
    
    Gaspari, M., Brighenti, F., D'Ercole, A. & Melioli, C. AGN feedback in galaxy groups: the delicate touch of self-regulated outflows 2011 Monthly Notices of the RAS
    Vol. 415, pp. 1549-1568 
    article DOI  
    BibTeX:
    @article{2011MNRAS.415.1549G,
      author = {Gaspari, M. and Brighenti, F. and D'Ercole, A. and Melioli, C. },
      title = {AGN feedback in galaxy groups: the delicate touch of self-regulated outflows},
      journal = {Monthly Notices of the RAS},
      year = {2011},
      volume = {415},
      pages = {1549-1568},
      doi = {http://dx.doi.org/10.1111/j.1365-2966.2011.18806.x}
    }
    
    Gaspari, M., Brighenti, F. & Ruszkowski, M. Solving the Cooling Flow Problem through Mechanical AGN Feedback 2012 Galaxy Clusters as Giant Cosmic Laboratories, pp. 14  inproceedings  
    BibTeX:
    @inproceedings{2012gcgc.conf...14G,
      author = {Gaspari, M. and Brighenti, F. and Ruszkowski, M.},
      title = {Solving the Cooling Flow Problem through Mechanical AGN Feedback},
      booktitle = {Galaxy Clusters as Giant Cosmic Laboratories},
      year = {2012},
      pages = {14}
    }
    
    Gaspari, M., Brighenti, F. & Temi, P. Mechanical AGN feedback: controlling the thermodynamical evolution of elliptical galaxies 2012 mnras
    Vol. 424, pp. 190-209 
    article DOI  
    BibTeX:
    @article{2012MNRAS.424..190G,
      author = {Gaspari, M. and Brighenti, F. and Temi, P.},
      title = {Mechanical AGN feedback: controlling the thermodynamical evolution of elliptical galaxies},
      journal = {mnras},
      year = {2012},
      volume = {424},
      pages = {190-209},
      doi = {http://dx.doi.org/10.1111/j.1365-2966.2012.21183.x}
    }
    
    Gaspari, M., Melioli, C., Brighenti, F. & D'Ercole, A. The dance of heating and cooling in galaxy clusters: three-dimensional simulations of self-regulated active galactic nuclei outflows 2011 Monthly Notices of the RAS
    Vol. 411, pp. 349-372 
    article DOI  
    BibTeX:
    @article{2011MNRAS.411..349G,
      author = {Gaspari, M. and Melioli, C. and Brighenti, F. and D'Ercole, A. },
      title = {The dance of heating and cooling in galaxy clusters: three-dimensional simulations of self-regulated active galactic nuclei outflows},
      journal = {Monthly Notices of the RAS},
      year = {2011},
      volume = {411},
      pages = {349-372},
      doi = {http://dx.doi.org/10.1111/j.1365-2966.2010.17688.x}
    }
    
    Gaspari, M., Ruszkowski, M. & Sharma, P. Cause and Effect of Feedback: Multiphase Gas in Cluster Cores Heated by AGN Jets 2012 The Astrophysical Journal
    Vol. 746, pp. 94 
    article DOI  
    BibTeX:
    @article{2012ApJ...746...94G,
      author = {Gaspari, M. and Ruszkowski, M. and Sharma, P.},
      title = {Cause and Effect of Feedback: Multiphase Gas in Cluster Cores Heated by AGN Jets},
      journal = {The Astrophysical Journal},
      year = {2012},
      volume = {746},
      pages = {94},
      doi = {http://dx.doi.org/10.1088/0004-637X/746/1/94}
    }
    
    Gawryszczak, A., Guzman, J., Plewa, T. & Kifonidis, K. Non-spherical core collapse supernovae III. Evolution towards homology and dependence on the numerical resolution 2010 Arxiv preprint arXiv:1007.0463  article  
    BibTeX:
    @article{gawryszczak2010non,
      author = {Gawryszczak, A. and Guzman, J. and Plewa, T. and Kifonidis, K.},
      title = {Non-spherical core collapse supernovae III. Evolution towards homology and dependence on the numerical resolution},
      journal = {Arxiv preprint arXiv:1007.0463},
      year = {2010}
    }
    
    Gawryszczak, A.J., Goodwin, S.P., Burkert, A. & Rózyczka, M. The Convergence of Grid- and Particle-based Codes in Star Formation Simulations 2005 Protostars and Planets V, pp. 8102-+  inproceedings  
    BibTeX:
    @inproceedings{Gawryszczak2005,
      author = {Gawryszczak, A.~J. and Goodwin, S.~P. and Burkert, A. and Rózyczka, M.},
      title = {The Convergence of Grid- and Particle-based Codes in Star Formation Simulations},
      booktitle = {Protostars and Planets V},
      year = {2005},
      pages = {8102-+}
    }
    
    Gerstmann, D., Potter, T., Houston, M., Bourke, P., Ma, K. & Wicenec, A. A practical visualization strategy for large-scale supernovae CFD simulations 2011 SIGGRAPH Asia 2011 Sketches, pp. 15  inproceedings  
    BibTeX:
    @inproceedings{gerstmann2011practical,
      author = {Gerstmann, D.K. and Potter, T. and Houston, M. and Bourke, P. and Ma, K.L. and Wicenec, A.},
      title = {A practical visualization strategy for large-scale supernovae CFD simulations},
      booktitle = {SIGGRAPH Asia 2011 Sketches},
      year = {2011},
      pages = {15}
    }
    
    Girichidis, P., Federrath, C., Allison, R., Banerjee, R. & Klessen, R.S. Importance of the initial conditions for star formation - III. Statistical properties of embedded protostellar clusters 2012 Monthly Notices of the RAS
    Vol. 420, pp. 3264-3280 
    article DOI  
    BibTeX:
    @article{2012MNRAS.420.3264G,
      author = {Girichidis, P. and Federrath, C. and Allison, R. and Banerjee, R. and Klessen, R.~S.},
      title = {Importance of the initial conditions for star formation - III. Statistical properties of embedded protostellar clusters},
      journal = {Monthly Notices of the RAS},
      year = {2012},
      volume = {420},
      pages = {3264-3280},
      doi = {http://dx.doi.org/10.1111/j.1365-2966.2011.20250.x}
    }
    
    Girichidis, P., Federrath, C., Banerjee, R. & Klessen, R.S. Importance of the initial conditions for star formation - II. Fragmentation-induced starvation and accretion shielding 2012 Monthly Notices of the RAS
    Vol. 420, pp. 613-626 
    article DOI  
    BibTeX:
    @article{2012MNRAS.420..613G,
      author = {Girichidis, P. and Federrath, C. and Banerjee, R. and Klessen, R.~S.},
      title = {Importance of the initial conditions for star formation - II. Fragmentation-induced starvation and accretion shielding},
      journal = {Monthly Notices of the RAS},
      year = {2012},
      volume = {420},
      pages = {613-626},
      doi = {http://dx.doi.org/10.1111/j.1365-2966.2011.20073.x}
    }
    
    Girichidis, P., Federrath, C., Banerjee, R. & Klessen, R.S. Importance of the initial conditions for star formation - I. Cloud evolution and morphology 2011 Monthly Notices of the RAS
    Vol. 413, pp. 2741-2759 
    article DOI  
    BibTeX:
    @article{2011MNRAS.413.2741G,
      author = {Girichidis, P. and Federrath, C. and Banerjee, R. and Klessen, R.~S.},
      title = {Importance of the initial conditions for star formation - I. Cloud evolution and morphology},
      journal = {Monthly Notices of the RAS},
      year = {2011},
      volume = {413},
      pages = {2741-2759},
      doi = {http://dx.doi.org/10.1111/j.1365-2966.2011.18348.x}
    }
    
    Glasner, S., Livne, E. & Truran, J. Novae: the Evolution from the Onset of Convection to Runaway 2007 Astrophysical Journal
    Vol. 665(2), pp. 1321-1333 
    article  
    BibTeX:
    @article{Glasner2007,
      author = {Glasner, S.A. and Livne, E. and Truran, J.W.},
      title = {Novae: the Evolution from the Onset of Convection to Runaway},
      journal = {Astrophysical Journal},
      year = {2007},
      volume = {665},
      number = {2},
      pages = {1321--1333}
    }
    
    Glasner, S., Livne, E. & Truran, J. The Sensitivity of Multidimensional Nova Calculations to the Outer Boundary Conditions 2006 Astrophysical Journal
    Vol. 625, pp. 347-250 
    article  
    BibTeX:
    @article{Glasner2006,
      author = {Glasner, S.A. and Livne, E. and Truran, J.W.},
      title = {The Sensitivity of Multidimensional Nova Calculations to the Outer Boundary Conditions},
      journal = {Astrophysical Journal},
      year = {2006},
      volume = {625},
      pages = {347-250}
    }
    
    Glimm, J., Brown, D. & Freitag, L. The Terascale Simulation Tools and Technologies Center Annual Report August 15, 2001-September 30, 2002 2002   techreport  
    BibTeX:
    @techreport{Glimm2002,
      author = {Glimm, J. and Brown, DL and Freitag, L.},
      title = {The Terascale Simulation Tools and Technologies Center Annual Report August 15, 2001-September 30, 2002},
      publisher = {UCRL-CR-150932, Lawrence Livermore National Lab., CA (US)},
      year = {2002}
    }
    
    González-Morales, P.A., Jain, R. & Thompson, M.J. Helioseismic Tests With the FLASH Simulation Code 2011 Journal of Physics: Conference Series
    Vol. 271Journal of Physics: Conference Series, pp. 012013 
    article DOI URL 
    Abstract: We show our first results from local helioseismic simulations using the numerical code FLASH by testing its suitability for simulating subphotospheric wave motions in helioseismology. In order to check the capability of this code for different sources of waves, we have implemented a non-magnetic plane-parallel atmosphere adding a source term to the energy equation. We confirm the capabilities of FLASH code for investigating the propagation of sound waves into a realistically stratified solar interior.
    BibTeX:
    @article{gonzalez2011helioseismic,
      author = {González-Morales, Pedro A. and Jain, Rekha and Thompson, Michael J.},
      title = {Helioseismic Tests With the FLASH Simulation Code},
      booktitle = {Journal of Physics: Conference Series},
      journal = {Journal of Physics: Conference Series},
      year = {2011},
      volume = {271},
      pages = {012013},
      url = {http://stacks.iop.org/1742-6596/271/i=1/a=012013},
      doi = {http://dx.doi.org/10.1088/1742-6596/271/1/012013}
    }
    
    Goodall, P.T., Alouani-Bibi, F. & Blundell, K.M. When microquasar jets and supernova collide: hydrodynamically simulating the SS 433--W 50 interaction 2011 Monthly Notices of the Royal Astronomical Society  article  
    BibTeX:
    @article{goodall2011microquasar,
      author = {Goodall, P. T. and Alouani-Bibi, F. and Blundell, K. M.},
      title = {When microquasar jets and supernova collide: hydrodynamically simulating the SS 433--W 50 interaction},
      journal = {Monthly Notices of the Royal Astronomical Society},
      publisher = {Wiley Online Library},
      year = {2011}
    }
    
    Goodall, P., Alouani Bibi, F. & Blundell, K.M. Hydrodynamic Simulations of the SS433-W50 Complex 2008 Microquasars and Beyond  inproceedings  
    BibTeX:
    @inproceedings{Goodall2008,
      author = {Goodall, P. and Alouani Bibi, F. and Blundell, K.~M.},
      title = {Hydrodynamic Simulations of the SS433-W50 Complex},
      booktitle = {Microquasars and Beyond},
      year = {2008}
    }
    
    Gordon, P.V., Ryzhik, L. & Vladimirova, N. The KPP system in a periodic flow with a heat loss 2005 Nonlinearity
    Vol. 18, pp. 571-589 
    article DOI  
    BibTeX:
    @article{Gordon2005,
      author = {Gordon, P.~V. and Ryzhik, L. and Vladimirova, N.},
      title = {The KPP system in a periodic flow with a heat loss},
      journal = {Nonlinearity},
      year = {2005},
      volume = {18},
      pages = {571-589},
      doi = {http://dx.doi.org/10.1088/0951-7715/18/2/007}
    }
    
    Gray, W. & Scannapieco, E. Formation of Compact Stellar Clusters by High-redshift Galaxy Outflows. III. Observability and Connection to Halo Globular Clusters 2011 The Astrophysical Journal
    Vol. 742, pp. 100 
    article  
    BibTeX:
    @article{gray2011formation,
      author = {Gray, W.J. and Scannapieco, E.},
      title = {Formation of Compact Stellar Clusters by High-redshift Galaxy Outflows. III. Observability and Connection to Halo Globular Clusters},
      journal = {The Astrophysical Journal},
      publisher = {IOP Publishing},
      year = {2011},
      volume = {742},
      pages = {100}
    }
    
    Gray, W. & Scannapieco, E. Formation of Compact Stellar Clusters by High-redshift Galaxy Outflows. II. Effect of Turbulence and Metal-line Cooling 2011 The Astrophysical Journal
    Vol. 733, pp. 88 
    article  
    BibTeX:
    @article{gray2011formation,
      author = {Gray, W.J. and Scannapieco, E.},
      title = {Formation of Compact Stellar Clusters by High-redshift Galaxy Outflows. II. Effect of Turbulence and Metal-line Cooling},
      journal = {The Astrophysical Journal},
      publisher = {IOP Publishing},
      year = {2011},
      volume = {733},
      pages = {88}
    }
    
    Gray, W. & Scannapieco, E. Formation of Compact Stellar Clusters by High-Redshift Galaxy Outflows. I. Non-Equilibrium Coolant Formation 2010 The Astrophysical Journal
    Vol. 718, pp. 417 
    article  
    BibTeX:
    @article{gray2010formation,
      author = {Gray, W.J. and Scannapieco, E.},
      title = {Formation of Compact Stellar Clusters by High-Redshift Galaxy Outflows. I. Non-Equilibrium Coolant Formation},
      journal = {The Astrophysical Journal},
      publisher = {IOP Publishing},
      year = {2010},
      volume = {718},
      pages = {417}
    }
    
    Gray, W.J. & Scannapieco, E. Thermal and Chemical Evolution of Collapsing Filaments 2013 The Astrophysical Journal
    Vol. 768(2), pp. 174 
    article  
    BibTeX:
    @article{gray2013thermal,
      author = {Gray, William J and Scannapieco, Evan},
      title = {Thermal and Chemical Evolution of Collapsing Filaments},
      journal = {The Astrophysical Journal},
      publisher = {IOP Publishing},
      year = {2013},
      volume = {768},
      number = {2},
      pages = {174}
    }
    
    Graziani, C., Tzeferacos, P., Lee, D., Lamb, D.Q., Weide, K., Fatenejad, M. & Miller, J. The Biermann Catastrophe in Numerical MHD 2014 Submitted to The Astrophysical Journal  unpublished URL 
    BibTeX:
    @unpublished{Biermann2014,
      author = {Carlo Graziani and Petros Tzeferacos and Dongwook Lee and Donald Q. Lamb and Klaus Weide and Milad Fatenejad and Joshua Miller},
      title = {The Biermann Catastrophe in Numerical MHD},
      journal = {Submitted to The Astrophysical Journal},
      year = {2014},
      note = {Submitted to The Astrophysical Journal},
      url = {http://arxiv.org/abs/1408.4161}
    }
    
    Groen, D., Zasada, S. & Coveney, P. Survey of Multiscale and Multiphysics Applications and Communities 2012 arXiv preprint arXiv:1208.6444  article  
    BibTeX:
    @article{groen2012survey,
      author = {Groen, D. and Zasada, S.J. and Coveney, P.V.},
      title = {Survey of Multiscale and Multiphysics Applications and Communities},
      journal = {arXiv preprint arXiv:1208.6444},
      year = {2012}
    }
    
    Gross, M. On gas dynamic effects in the modelling of laser cutting processes 2006 Applied Mathematical Modelling
    Vol. 30(4), pp. 307-318 
    article  
    BibTeX:
    @article{Gross2006,
      author = {Gross, M.S.},
      title = {On gas dynamic effects in the modelling of laser cutting processes},
      journal = {Applied Mathematical Modelling},
      year = {2006},
      volume = {30},
      number = {4},
      pages = {307-318}
    }
    
    Gross, M., Black, I. & Müller, W. 3-D Simulation model for gas-assisted laser cutting 2005 Lasers in Engineering
    Vol. 15(1-2), pp. 129-146 
    article  
    BibTeX:
    @article{Gross2005,
      author = {Gross, M.S. and Black, I. and Müller, W.H.},
      title = {3-D Simulation model for gas-assisted laser cutting},
      journal = {Lasers in Engineering},
      year = {2005},
      volume = {15},
      number = {1--2},
      pages = {129--146}
    }
    
    Gross, M., Black, I. & Müller, W. Determination of the lower complexity limit for laser cut quality modelling 2004 Modelling and Simulation in Materials Science and Engineering
    Vol. 12(6), pp. 1237-1249 
    article  
    BibTeX:
    @article{Gross2004,
      author = {Gross, M.S. and Black, I. and Müller, W.H.},
      title = {Determination of the lower complexity limit for laser cut quality modelling},
      journal = {Modelling and Simulation in Materials Science and Engineering},
      year = {2004},
      volume = {12},
      number = {6},
      pages = {1237--1249}
    }
    
    Guidry, M. Algebraic stabilization of explicit numerical integration for extremely stiff reaction networks 2012 Journal of Computational Physics  article  
    BibTeX:
    @article{guidry2012algebraic,
      author = {Guidry, M.},
      title = {Algebraic stabilization of explicit numerical integration for extremely stiff reaction networks},
      journal = {Journal of Computational Physics},
      publisher = {Elsevier},
      year = {2012}
    }
    
    Guidry, M., Budiardja, R., Feger, E., Billings, J., Hix, W., Messer, O., Roche, K., McMahon, E. & He, M. Explicit Integration of Extremely-Stiff Reaction Networks: Asymptotic Methods 2011 Arxiv preprint arXiv:1112.4716  article  
    BibTeX:
    @article{guidry2011explicit,
      author = {Guidry, MW and Budiardja, R. and Feger, E. and Billings, JJ and Hix, WR and Messer, OEB and Roche, KJ and McMahon, E. and He, M.},
      title = {Explicit Integration of Extremely-Stiff Reaction Networks: Asymptotic Methods},
      journal = {Arxiv preprint arXiv:1112.4716},
      year = {2011}
    }
    
    Guillochon, J., Dan, M., Ramirez-Ruiz, E. & Rosswog, S. Surface Detonations in Double Degenerate Binary Systems Triggered by Accretion Stream Instabilities 2010 The Astrophysical Journal Letters
    Vol. 709, pp. L64 
    article  
    BibTeX:
    @article{guillochon2010surface,
      author = {Guillochon, J. and Dan, M. and Ramirez-Ruiz, E. and Rosswog, S.},
      title = {Surface Detonations in Double Degenerate Binary Systems Triggered by Accretion Stream Instabilities},
      journal = {The Astrophysical Journal Letters},
      publisher = {IOP Publishing},
      year = {2010},
      volume = {709},
      pages = {L64}
    }
    
    Guillochon, J. & Ramirez-Ruiz, E. Hydrodynamical Simulations to Determine the Feeding Rate of Black Holes by the Tidal Disruption of Stars: The Importance of the Impact Parameter and Stellar Structure 2013 The Astrophysical Journal
    Vol. 767(1), pp. 25 
    article  
    BibTeX:
    @article{guillochon2013hydrodynamical,
      author = {Guillochon, James and Ramirez-Ruiz, Enrico},
      title = {Hydrodynamical Simulations to Determine the Feeding Rate of Black Holes by the Tidal Disruption of Stars: The Importance of the Impact Parameter and Stellar Structure},
      journal = {The Astrophysical Journal},
      publisher = {IOP Publishing},
      year = {2013},
      volume = {767},
      number = {1},
      pages = {25}
    }
    
    Guillochon, J., Ramirez-Ruiz, E. & Lin, D. Consequences of the Ejection and Disruption of Giant Planets 2011 The Astrophysical Journal
    Vol. 732, pp. 74 
    article  
    BibTeX:
    @article{guillochon2011consequences,
      author = {Guillochon, J. and Ramirez-Ruiz, E. and Lin, D.},
      title = {Consequences of the Ejection and Disruption of Giant Planets},
      journal = {The Astrophysical Journal},
      publisher = {IOP Publishing},
      year = {2011},
      volume = {732},
      pages = {74}
    }
    
    Guillochon, J., Ramirez-Ruiz, E. & Lin, D. Consequences of the ejection and disruption of giant planets 2010 Arxiv preprint arXiv:1012.2382  article  
    BibTeX:
    @article{guillochon2010consequences,
      author = {Guillochon, J. and Ramirez-Ruiz, E. and Lin, D.N.C.},
      title = {Consequences of the ejection and disruption of giant planets},
      journal = {Arxiv preprint arXiv:1012.2382},
      year = {2010}
    }
    
    Guillochon, J., Ramirez-Ruiz, E., Rosswog, S. & Kasen, D. THREE-DIMENSIONAL SIMULATIONS OF TIDALLY DISRUPTED SOLAR-TYPE STARS AND THE OBSERVATIONAL SIGNATURES OF SHOCK BREAKOUT 2009 The Astrophysical Journal
    Vol. 705(1), pp. 844-853 
    article URL 
    Abstract: We describe a three-dimensional simulation of a 1 M solar-type star approaching a 106 M black hole on a parabolic orbit with a pericenter distance well within the tidal radius. While falling toward the black hole, the star is not only stretched along the orbital direction but also even more severely compressed at right angles to the orbit. The overbearing degree of compression achieved shortly after pericenter leads to the production of strong shocks that largely homogenize the temperature profile of the star, resulting in surface temperatures comparable to the initial temperature of the star's core. This phenomenon, which precedes the fallback accretion phase, gives rise to a unique double-peaked X-ray signature that, if detected, may be one of the few observable diagnostics of how stars behave under the influence of strong gravitational fields. If [?]106 M black holes were prevalent in small or even dwarf galaxies, the nearest of such flares may be detectable by EXIST from no further away than the Virgo Cluster.
    BibTeX:
    @article{Guillochon2009,
      author = {James Guillochon and Enrico Ramirez-Ruiz and Stephan Rosswog and and Daniel Kasen},
      title = {THREE-DIMENSIONAL SIMULATIONS OF TIDALLY DISRUPTED SOLAR-TYPE STARS AND THE OBSERVATIONAL SIGNATURES OF SHOCK BREAKOUT},
      journal = {The Astrophysical Journal},
      year = {2009},
      volume = {705},
      number = {1},
      pages = {844-853},
      url = {http://stacks.iop.org/0004-637X/705/844}
    }
    
    Guillochon, J., Ramirez-Ruiz, E., Rosswog, S. & Kasen, D. Three-dimensional Simulations of Tidally Disrupted Solar-type Stars and the Observational Signatures of Shock Breakout 2009 The Astrophysical Journal
    Vol. 705, pp. 844 
    article  
    BibTeX:
    @article{guillochon2009three,
      author = {Guillochon, J. and Ramirez-Ruiz, E. and Rosswog, S. and Kasen, D.},
      title = {Three-dimensional Simulations of Tidally Disrupted Solar-type Stars and the Observational Signatures of Shock Breakout},
      journal = {The Astrophysical Journal},
      publisher = {IOP Publishing},
      year = {2009},
      volume = {705},
      pages = {844}
    }
    
    Guzman, J. COLLEGE OF ARTS AND SCIENCES 2009 School: FLORIDA STATE UNIVERSITY  phdthesis  
    BibTeX:
    @phdthesis{guzman2009college,
      author = {Guzman, J.},
      title = {COLLEGE OF ARTS AND SCIENCES},
      school = {FLORIDA STATE UNIVERSITY},
      year = {2009}
    }
    
    Guzman, J. & Plewa, T. Non-spherical core-collapse supernovae: evolution towards homologous expansion 2009 Nonlinearity
    Vol. 22(11), pp. 2775-2797 
    article URL 
    Abstract: We study the hydrodynamic evolution of a non-spherical core-collapse supernova in multidimensions. We begin our study from the moment of shock revival and continue for the first week after the explosion when the expansion of the supernova ejecta becomes homologous. We observe the growth and interaction of Richtmyer-Meshkov, Rayleigh-Taylor and Kelvin-Helmholtz instabilities resulting in an extensive mixing of the heavy elements throughout the ejecta.We obtain a series of models at progressively higher resolution and provide a preliminary discussion of numerical convergence. Unlike in previous studies, our computations are performed in a single domain. Periodic mesh mapping (Couch et al 2009 Astrophys. J. 696 953-70 and Kifonidis et al 2006 Astron. Astrophys. 453 661-78) is avoided. This is made possible by employing an adaptive mesh refinement strategy in which the computational workload (defined as the product of the total number of computational cells and the length of the time step) is monitored and, if necessary, limited.Our results are in overall good agreement with the simulations reported by Kifonidis et al (2006 Astron. Astrophys. 453 661-78). We demonstrate, however, that the amount of mixing and the kinematic properties of radioactive species (i.e. 56Ni) are extremely anisotropic. In particular, we find that the model displays a strong tendency to expand laterally away from the equatorial plane towards the poles. Although this tendency is usually attributed to numerical artefacts characteristic of computations with assumed symmetry (axis effect), the observed behaviour can be largely explained by the structure of the neutrino-driven explosion model. Future studies are needed to establish to what degree the morphology of a young supernova remnant can be used to probe early stages of the explosion especially in situations when the standing accretion shock instability is at work within the first second after core bounce.
    BibTeX:
    @article{Guzman2009,
      author = {J Guzman and T Plewa},
      title = {Non-spherical core-collapse supernovae: evolution towards homologous expansion},
      journal = {Nonlinearity},
      year = {2009},
      volume = {22},
      number = {11},
      pages = {2775-2797},
      url = {http://stacks.iop.org/0951-7715/22/2775}
    }
    
    Handy, T., Plewa, T., Remington, B., Drake, R.P., Kuranz, C., Ohnishi, N. & Takabe, H. Feasibility study of the standing accretion shock instability experiment at National Ignition Facility 2012 High Energy Density Physics  article  
    BibTeX:
    @article{handy2012feasibility,
      author = {Handy, T. and Plewa, T. and Remington, B.A. and Drake, R. Paul and Kuranz, C.C. and Ohnishi, N. and Takabe, H.},
      title = {Feasibility study of the standing accretion shock instability experiment at National Ignition Facility},
      journal = {High Energy Density Physics},
      publisher = {Elsevier},
      year = {2012}
    }
    
    Hansen, S., Macció, A., Romano-Diaz, E., Hoffman, Y., Brüggen, M., Scannapieco, E. & Stinson, G. The temperature of hot gas in galaxies and clusters: baryons dancing to the tune of dark matter 2011 The Astrophysical Journal
    Vol. 734, pp. 62 
    article  
    BibTeX:
    @article{hansen2011temperature,
      author = {Hansen, S.H. and Macció, A.V. and Romano-Diaz, E. and Hoffman, Y. and Brüggen, M. and Scannapieco, E. and Stinson, G.S.},
      title = {The temperature of hot gas in galaxies and clusters: baryons dancing to the tune of dark matter},
      journal = {The Astrophysical Journal},
      publisher = {IOP Publishing},
      year = {2011},
      volume = {734},
      pages = {62}
    }
    
    Harding, E. Observations of shear flows in high-energy-density plasmas 2010 School: The University of Michigan  phdthesis  
    BibTeX:
    @phdthesis{harding2010observations,
      author = {Harding, E.C.},
      title = {Observations of shear flows in high-energy-density plasmas},
      school = {The University of Michigan},
      year = {2010}
    }
    
    Harding, E., Drake, R.P., Aglitskiy, Y., Plewa, T., Velikovich, A., Gillespie, R., Weaver, J., Visco, A., Grosskopf, M. & Ditmar, J. Laser driven supersonic flow over a compressible foam surface on the Nike laser 2010 Physics of Plasmas
    Vol. 17, pp. 056310 
    article  
    BibTeX:
    @article{harding2010laser,
      author = {Harding, EC and Drake, R. Paul and Aglitskiy, Y. and Plewa, T. and Velikovich, AL and Gillespie, RS and Weaver, JL and Visco, A. and Grosskopf, MJ and Ditmar, JR},
      title = {Laser driven supersonic flow over a compressible foam surface on the Nike laser},
      journal = {Physics of Plasmas},
      year = {2010},
      volume = {17},
      pages = {056310}
    }
    
    Haroz, S., Ma, K. & Heitmann, K. Multiple uncertainties in time-variant cosmological particle data 2008 Visualization Symposium, 2008. PacificVIS'08. IEEE Pacific, pp. 207-214  inproceedings  
    BibTeX:
    @inproceedings{haroz2008multiple,
      author = {Haroz, S. and Ma, K.L. and Heitmann, K.},
      title = {Multiple uncertainties in time-variant cosmological particle data},
      booktitle = {Visualization Symposium, 2008. PacificVIS'08. IEEE Pacific},
      year = {2008},
      pages = {207--214}
    }
    
    Hastings, A. & Choudhary, A. Exploiting Shared Memory to Improve Parallel I/O Performance 2006
    Vol. 4192Lecture notes in computer science, pp. 212 
    inproceedings  
    BibTeX:
    @inproceedings{Hastings2006,
      author = {Hastings, A.B. and Choudhary, A.},
      title = {Exploiting Shared Memory to Improve Parallel I/O Performance},
      booktitle = {Lecture notes in computer science},
      publisher = {Springer},
      year = {2006},
      volume = {4192},
      pages = {212}
    }
    
    Hawley, W.P., Athanassiadou, T. & Timmes, F.X. Zero Impact Parameter White Dwarf Collisions in FLASH 2012 The Astrophysical Journal
    Vol. 759(1), pp. 39 
    article DOI URL 
    BibTeX:
    @article{hawley2012zero,
      author = {W. P. Hawley and T. Athanassiadou and F. X. Timmes},
      title = {Zero Impact Parameter White Dwarf Collisions in FLASH},
      journal = {The Astrophysical Journal},
      year = {2012},
      volume = {759},
      number = {1},
      pages = {39},
      url = {http://stacks.iop.org/0004-637X/759/i=1/a=39},
      doi = {http://dx.doi.org/10.1088/0004-637X/759/1/39}
    }
    
    He, Y.H. Franklin: User Experiences 2009   techreport  
    BibTeX:
    @techreport{He2009,
      author = {He, Yun Helen},
      title = {Franklin: User Experiences},
      year = {2009}
    }
    
    Hearn, N.C., Plewa, T., Drake, R.P. & Kuranz, C. Flash Code Simulations of Rayleigh-Taylor and Richtmyer-Meshkov Instabilities in Laser-Driven Experiments 2007 Astrophysics and Space Science
    Vol. 307, pp. 227-231 
    article DOI  
    BibTeX:
    @article{Hearn2007,
      author = {Hearn, N.~C. and Plewa, T. and Drake, R. Paul and Kuranz, C.},
      title = {Flash Code Simulations of Rayleigh-Taylor and Richtmyer-Meshkov Instabilities in Laser-Driven Experiments},
      journal = {Astrophysics and Space Science},
      year = {2007},
      volume = {307},
      pages = {227-231},
      doi = {http://dx.doi.org/10.1007/s10509-006-9226-5}
    }
    
    Hearn, N.C., Plewa, T., Drake, R.P. & Kuranz, C. FLASH Code Validation with Laser-Driven Rayleigh-Taylor and Richtmyer-Meshkov Instabilities 2006 Proceedings of the Tenth International Workshop on the Physics of Turbulent Mixing, pp. 17-21  misc  
    BibTeX:
    @misc{Hearn2006,
      author = {Hearn, N. C. and Plewa, T. and Drake, R. Paul and Kuranz, C.},
      title = {FLASH Code Validation with Laser-Driven Rayleigh-Taylor and Richtmyer-Meshkov Instabilities},
      booktitle = {Proceedings of the Tenth International Workshop on the Physics of Turbulent Mixing},
      year = {2006},
      pages = {17-21}
    }
    
    Heath, D., Krause, M. & Alexander, P. Chemical enrichment of the intracluster medium by FR II radio sources 2007 Monthly Notices of the RAS
    Vol. 374, pp. 787-792 
    article DOI  
    BibTeX:
    @article{Heath2007,
      author = {Heath, D. and Krause, M. and Alexander, P.},
      title = {Chemical enrichment of the intracluster medium by FR II radio sources},
      journal = {Monthly Notices of the RAS},
      year = {2007},
      volume = {374},
      pages = {787-792},
      doi = {http://dx.doi.org/10.1111/j.1365-2966.2006.11191.x}
    }
    
    Heinz, S., Brüggen, M. & Friedman, S. XIM---a Virtual X-ray Observatory: Investigating the X-ray Appearance and Line Profile Function of Vortex Rings in Galaxy Clusters 2011 The Astrophysical Journal Supplement Series
    Vol. 194(2), pp. 21 
    article DOI URL 
    BibTeX:
    @article{heinz2011xim,
      author = {Heinz, S. and Brüggen, M. and Friedman, S.},
      title = {XIM---a Virtual X-ray Observatory: Investigating the X-ray Appearance and Line Profile Function of Vortex Rings in Galaxy Clusters},
      journal = {The Astrophysical Journal Supplement Series},
      publisher = {IOP Publishing},
      year = {2011},
      volume = {194},
      number = {2},
      pages = {21},
      url = {http://iopscience.iop.org/0067-0049/194/2/21},
      doi = {http://dx.doi.org/10.1088/0067-0049/194/2/21}
    }
    
    Heinz, S., Brüggen, M., Barbieri, C., Daniel, M., de Wit, W., Dravins, D., Jensen, H., Kervella, P., Le Bohec, S., Malbet, F. & others XIM: A virtual X-ray observatory for hydrodynamic simulations 2009 ArXiv e-prints  article  
    Abstract: We present a description of the public code XIM , a virtual X-ray observatory. XIM can be used to convert hydrodynamic
    simulations of astrophysical objects, such as large scale structure, galaxy clusters, groups, galaxies,
    supernova remnants, and similar extended objects, into virtual X-ray observations for direct comparison with
    observations and for post-processing with standard X-ray analysis tools. By default, XIM simulates Chandra
    and the International X-ray Observatory IXO , but can accommodate any user-specified telescope parameters
    and instrument responses. Examples of XIM applications include virtual Chandra imaging of simulated X-ray
    cavities from AGN feedback in galaxy clusters, kinematic mapping of cluster velocity fields (e.g., due to mergers
    or AGN feedback), as well as detailed spectral modeling of multi-phase, multi-temperature spectra from
    space plasmas.
    BibTeX:
    @article{2009arXiv0903.0043H,
      author = {Heinz, S. and Brüggen, M. and Barbieri, C. and Daniel, MK and de Wit, WJ and Dravins, D. and Jensen, H. and Kervella, P. and Le Bohec, S. and Malbet, F. and others},
      title = {XIM: A virtual X-ray observatory for hydrodynamic simulations},
      journal = {ArXiv e-prints},
      year = {2009}
    }
    
    Heinz, S., Brüggen, M. & Morsony, B. Prospects of High-Resolution X-ray Spectroscopy for Active Galactic Nucleus Feedback in Galaxy Clusters 2010 The Astrophysical Journal
    Vol. 708, pp. 462-468 
    article DOI  
    BibTeX:
    @article{2010ApJ...708..462H,
      author = {Heinz, S. and Brüggen, M. and Morsony, B.},
      title = {Prospects of High-Resolution X-ray Spectroscopy for Active Galactic Nucleus Feedback in Galaxy Clusters},
      journal = {The Astrophysical Journal},
      year = {2010},
      volume = {708},
      pages = {462-468},
      doi = {http://dx.doi.org/10.1088/0004-637X/708/1/462}
    }
    
    Heinz, S., Brüggen, M., Young, A. & Levesque, E. The answer is blowing in the wind: simulating the interaction of jets with dynamic cluster atmospheres 2006 Monthly Notices of the RAS
    Vol. 373, pp. L65-L69 
    article DOI  
    BibTeX:
    @article{Heinz2006,
      author = {Heinz, S. and Brüggen, M. and Young, A. and Levesque, E.},
      title = {The answer is blowing in the wind: simulating the interaction of jets with dynamic cluster atmospheres},
      journal = {Monthly Notices of the RAS},
      year = {2006},
      volume = {373},
      pages = {L65-L69},
      doi = {http://dx.doi.org/10.1111/j.1745-3933.2006.00243.x}
    }
    
    Heinz, S. & Churazov, E. Heating the Bubbly Gas of Galaxy Clusters with Weak Shocks and Sound Waves 2005 Astrophysical Journal, Letters
    Vol. 634, pp. L141-L144 
    article DOI  
    BibTeX:
    @article{Heinz2005,
      author = {Heinz, S. and Churazov, E.},
      title = {Heating the Bubbly Gas of Galaxy Clusters with Weak Shocks and Sound Waves},
      journal = {Astrophysical Journal, Letters},
      year = {2005},
      volume = {634},
      pages = {L141-L144},
      doi = {http://dx.doi.org/10.1086/498301}
    }
    
    Heinz, S., Churazov, E., Forman, W., Jones, C. & Briel, U.G. Ram pressure stripping and the formation of cold fronts 2003 Monthly Notices of the RAS
    Vol. 346, pp. 13-17 
    article DOI  
    BibTeX:
    @article{Heinz2003,
      author = {Heinz, S. and Churazov, E. and Forman, W. and Jones, C. and Briel, U.~G.},
      title = {Ram pressure stripping and the formation of cold fronts},
      journal = {Monthly Notices of the RAS},
      year = {2003},
      volume = {346},
      pages = {13-17},
      doi = {http://dx.doi.org/10.1046/j.1365-2966.2003.07066.x}
    }
    
    Heitmann, K., Luki??, Z., Fasel, P., Habib, S., Warren, M.S., White, M., Ahrens, J., Ankeny, L., Armstrong, R., O'Shea, B., Ricker, P.M., Springel, V., Stadel, J. & Trac, H. The Cosmic Code Comparison Project 2008 Computational Science and Discovery
    Vol. 1(1), pp. 015003 
    article DOI  
    BibTeX:
    @article{heitmann_cosmic_2008,
      author = {Heitmann, K. and Luki??, Z. and Fasel, P. and Habib, S. and Warren, M. S. and White, M. and Ahrens, J. and Ankeny, L. and Armstrong, R. and O'Shea, B. and Ricker, P. M. and Springel, V. and Stadel, J. and Trac, H.},
      title = {The Cosmic Code Comparison Project},
      journal = {Computational Science and Discovery},
      year = {2008},
      volume = {1},
      number = {1},
      pages = {015003},
      doi = {http://dx.doi.org/10.1088/1749-4699/1/1/015003}
    }
    
    Heitmann, K., Ricker, P.M., Warren, M.S. & Habib, S. Robustness of Cosmological Simulations. I. Large-Scale Structure 2005 Astrophysical Journal Supplement Series
    Vol. 160, pp. 28-58 
    article URL 
    Abstract: The gravitationally driven evolution of cold dark matter dominates the formation of structure in the universe over a wide range of length scales. While the longest scales can be treated by perturbation theory, a fully quantitative understanding of nonlinear effects requires the application of large-scale particle simulation methods. Additionally, precision predictions for next-generation observatio-ns, such as weak gravitational lensing, can only be obtained from numerical simulations. In this paper, we compare results from several N-body codes using test problems and a diverse set of diagnostics, focusing on a medium-resolution regime appropriate for studying many observationally relevant aspects of structure formation. Our conclusions are that-despite the use of different algorithms and error-control methodologies-overall, the codes yield consistent results. The agreement over a wide range of scales for the cosmological tests is test-dependent. In the best cases, it is at the 5% level or better, however, for other cases it can be significantly larger than 10 These include the halo mass function at low masses and the mass power spectrum at small scales. While there exist explanations for most of the discrepancies, our results point to the need for significant improvement in N-body errors and their understanding to match the precision of near-future observations. The simulation results, including halo catalogs, and initial conditions used, are publicly available.
    BibTeX:
    @article{heitmann_robustness_2005,
      author = {Heitmann, Katrin and Ricker, Paul M. and Warren, Michael S. and Habib, Salman},
      title = {Robustness of Cosmological Simulations. I. Large-Scale Structure},
      journal = {Astrophysical Journal Supplement Series},
      year = {2005},
      volume = {160},
      pages = {28--58},
      url = {http://adsabs.harvard.edu/abs/2005ApJS..160...28H}
    }
    
    Heitmann, K., Lukic, Z., Fasel, P., Habib, S., Warren, M.S., White, M., Ahrens, J., Ankeny, L., Armstrong, R., O'Shea, B., Ricker, P.M., Springel, V., Stadel, J. & Trac, H. The Cosmic Code Comparison Project 2007 The Astrophysical Journal  article  
    BibTeX:
    @article{Heitmann2007,
      author = {Heitmann, K. and Lukic, Z. and Fasel, P. and Habib, S. and Warren, M.~S. and White, M. and Ahrens, J. and Ankeny, L. and Armstrong, R. and O'Shea, B. and Ricker, P.~M. and Springel, V. and Stadel, J. and Trac, H.},
      title = {The Cosmic Code Comparison Project},
      journal = {The Astrophysical Journal},
      year = {2007},
      note = {submitted}
    }
    
    Henley, D.B., Kwak, K. & Shelton, R.L. Simulations of High-velocity Clouds. II. Ablation from High-velocity Clouds as a Source of Low-velocity High Ions 2012 The Astrophysical Journal
    Vol. 753(1), pp. 58 
    article  
    BibTeX:
    @article{henley2012simulations,
      author = {Henley, D. B. and Kwak, K. and Shelton, R. L.},
      title = {Simulations of High-velocity Clouds. II. Ablation from High-velocity Clouds as a Source of Low-velocity High Ions},
      journal = {The Astrophysical Journal},
      publisher = {IOP Publishing},
      year = {2012},
      volume = {753},
      number = {1},
      pages = {58}
    }
    
    Henley, D.B., Shelton, R.L., Kwak, K., Joung, M.R. & Mac Low, M.-M. Mapping the Hot Gas in the Galaxy with XMM-Newton 2011
    Vol. 43American Astronomical Society Meeting Abstracts No.217, pp. 206.01 
    misc  
    BibTeX:
    @misc{2011AAS...21720601H,
      author = {Henley, D.~B. and Shelton, R.~L. and Kwak, K. and Joung, M.~R. and Mac Low, Mordecai-Mark},
      title = {Mapping the Hot Gas in the Galaxy with XMM-Newton},
      booktitle = {American Astronomical Society Meeting Abstracts No.217},
      year = {2011},
      volume = {43},
      pages = {206.01}
    }
    
    Henley, D.B., Shelton, R.L., Kwak, K., Joung, M.R. & Mac Low, M.-M. The Origin of the Hot Gas in the Galactic Halo: Confronting Models with XMM-Newton Observations 2010 The Astrophysical Journal
    Vol. 723, pp. 935-953 
    article DOI  
    BibTeX:
    @article{2010ApJ...723..935H,
      author = {Henley, D. B. and Shelton, R. L. and Kwak, K. and Joung, M. R. and Mac Low, M.-M.},
      title = {The Origin of the Hot Gas in the Galactic Halo: Confronting Models with XMM-Newton Observations},
      journal = {The Astrophysical Journal},
      year = {2010},
      volume = {723},
      pages = {935-953},
      doi = {http://dx.doi.org/10.1088/0004-637X/723/1/935}
    }
    
    Hennebelle, P., Banerjee, R., Vázquez-Semadeni, E., Klessen, R.S. & Audit, E. From the warm magnetized atomic medium to molecular clouds 2008 A&A
    Vol. 486(3), pp. L43-L46 
    article DOI URL 
    BibTeX:
    @article{Hennebelle2008,
      author = {Hennebelle, P. and Banerjee, R. and Vázquez-Semadeni, E. and Klessen, R. S. and Audit, E.},
      title = {From the warm magnetized atomic medium to molecular clouds},
      journal = {A&A},
      year = {2008},
      volume = {486},
      number = {3},
      pages = {L43-L46},
      url = {http://dx.doi.org/10.1051/0004-6361:200810165},
      doi = {http://dx.doi.org/10.1051/0004-6361:200810165}
    }
    
    Hill, A., Wood, K. & Haffner, L. The role of turbulence in the warm ionized medium 2010 Arxiv preprint arXiv:1007.2767  article  
    BibTeX:
    @article{hill2010role,
      author = {Hill, A.S. and Wood, K. and Haffner, L.M.},
      title = {The role of turbulence in the warm ionized medium},
      journal = {Arxiv preprint arXiv:1007.2767},
      year = {2010}
    }
    
    Hill, A.S., Joung, M.R., Mac Low, M.-M., Benjamin, R.A., Haffner, L.M., Klingenberg, C. & Waagan, K. Vertical Structure of a Supernova-driven Turbulent, Magnetized Interstellar Medium 2012 The Astrophysical Journal
    Vol. 750(2), pp. 104 
    article  
    BibTeX:
    @article{hill2012vertical,
      author = {Hill, A. S. and Joung, M. R. and Mac Low, Mordecai-Mark and Benjamin, R. A. and Haffner, L. M. and Klingenberg, C. and Waagan, K.},
      title = {Vertical Structure of a Supernova-driven Turbulent, Magnetized Interstellar Medium},
      journal = {The Astrophysical Journal},
      publisher = {IOP Publishing},
      year = {2012},
      volume = {750},
      number = {2},
      pages = {104}
    }
    
    Hill, A.S., Joung, M.R., Benjamin, R.A., Haffner, L.M., Klingenberg, C., Mac Low, M.M., Waagan, K. & Wood, K.A. MHD Simulations of a Supernova-driven ISM and the Warm Ionized Medium 2011
    Vol. 43American Astronomical Society Meeting Abstracts No.217, pp. 251.06 
    misc  
    BibTeX:
    @misc{2011AAS...21725106H,
      author = {Hill, A.~S. and Joung, M.~R. and Benjamin, R.~A. and Haffner, L.~M. and Klingenberg, C. and Mac Low, M.~M. and Waagan, K. and Wood, K.~A.},
      title = {MHD Simulations of a Supernova-driven ISM and the Warm Ionized Medium},
      booktitle = {American Astronomical Society Meeting Abstracts No.217},
      year = {2011},
      volume = {43},
      pages = {251.06}
    }
    
    Hill, A.S., Joung, M.R., Mac Low, M.-M., Benjamin, R.A., Haffner, L.M., Klingenberg, C. & Waagan, K. Vertical structure of a supernova-driven turbulent magnetized ISM 2012 ArXiv e-prints  article  
    BibTeX:
    @article{2012arXiv1202.0552H,
      author = {Hill, A.~S. and Joung, M.~R. and Mac Low, M.-M. and Benjamin, R.~A. and Haffner, L.~M. and Klingenberg, C. and Waagan, K.},
      title = {Vertical structure of a supernova-driven turbulent magnetized ISM},
      journal = {ArXiv e-prints},
      year = {2012}
    }
    
    Hinkel, N.R., Scannapieco, E. & Timmes, F.X. Self-Enrichment of Merging Stellar Clusters 2008 10th Symposium on Nuclei in the Cosmos (NIC X)  inproceedings URL 
    BibTeX:
    @inproceedings{Hinkel2008,
      author = {Hinkel, Natalie R. and Scannapieco, Evan and Timmes, F.~X.},
      title = {Self-Enrichment of Merging Stellar Clusters},
      booktitle = {10th Symposium on Nuclei in the Cosmos (NIC X)},
      year = {2008},
      note = {PoS(NIC X)211},
      url = {http://pos.sissa.it/archive/conferences/053/211/NIC%20X_211.pdf}
    }
    
    Hochstein, L. & Basili, V.R. The ASC-Alliance Projects: A Case Study of Large-Scale Parallel Scientific Code Development 2008 Computer
    Vol. 41(3), pp. 50-58 
    article DOI  
    BibTeX:
    @article{Hochstein2008a,
      author = {Hochstein, Lorin and Basili, Victor R.},
      title = {The ASC-Alliance Projects: A Case Study of Large-Scale Parallel Scientific Code Development},
      journal = {Computer},
      year = {2008},
      volume = {41},
      number = {3},
      pages = {50-58},
      doi = {http://dx.doi.org/10.1109/MC.2008.101}
    }
    
    Hochstein, L. & Basili, V.R. The ASC-Alliance projects: A case study of large-scale parallel scientific code development 2006 (CS-TR-4834, UMIACS-TR-2006-50)  techreport  
    BibTeX:
    @techreport{Hochstein2006,
      author = {Hochstein, L. and Basili, V. R.},
      title = {The ASC-Alliance projects: A case study of large-scale parallel scientific code development},
      year = {2006},
      number = {CS-TR-4834, UMIACS-TR-2006-50},
      note = {in submission to IEEE Computer}
    }
    
    Hochstein, L. & Jiao, Y. The cost of the build tax in scientific software 2011 Empirical Software Engineering and Measurement (ESEM), 2011 International Symposium on, pp. 384-387  inproceedings  
    BibTeX:
    @inproceedings{hochstein2011cost,
      author = {Hochstein, L. and Jiao, Y.},
      title = {The cost of the build tax in scientific software},
      booktitle = {Empirical Software Engineering and Measurement (ESEM), 2011 International Symposium on},
      year = {2011},
      pages = {384--387}
    }
    
    Hochstein, L., Shull, F. & Reid, L. The role of MPI in development time: a case study 2008 High Performance Computing, Networking, Storage and Analysis, 2008. SC 2008. International Conference for, pp. 1-10  inproceedings  
    BibTeX:
    @inproceedings{hochstein2008role,
      author = {Hochstein, L. and Shull, F. and Reid, L.B.},
      title = {The role of MPI in development time: a case study},
      booktitle = {High Performance Computing, Networking, Storage and Analysis, 2008. SC 2008. International Conference for},
      year = {2008},
      pages = {1--10}
    }
    
    Hochstein, L., Shull, F. & Reid, L. The role of MPI in development time: A case study 2008 Proceedings of the 2008 ACM/IEEE conference on Supercomputing  incollection  
    BibTeX:
    @incollection{Hochstein2008,
      author = {Hochstein, L.M., and Shull, Forrest, and Reid, L.B.},
      title = {The role of MPI in development time: A case study},
      booktitle = {Proceedings of the 2008 ACM/IEEE conference on Supercomputing},
      year = {2008}
    }
    
    Hocuk, S. & Spaans, M. Star formation near an obscured AGN: Variations in the IMF   article  
    BibTeX:
    @article{hocukstar,
      author = {Hocuk, S. and Spaans, M.},
      title = {Star formation near an obscured AGN: Variations in the IMF}
    }
    
    Hocuk, S. & Spaans, M. Star formation near an obscured AGN 2011 Astronomy & Astrophysics
    Vol. 536 
    article  
    BibTeX:
    @article{hocuk2011star,
      author = {Hocuk, S. and Spaans, M.},
      title = {Star formation near an obscured AGN},
      journal = {Astronomy & Astrophysics},
      publisher = {EDP Sciences},
      year = {2011},
      volume = {536}
    }
    
    Hocuk, S. The Origin of Stars: Tales from the Unexpected in Extreme Environments 2011 School: Kapteyn Astronomical Institute, RuG seyit@astro.rug.nl  phdthesis  
    BibTeX:
    @phdthesis{2011PhDT........16H,
      author = {Hocuk, S.},
      title = {The Origin of Stars: Tales from the Unexpected in Extreme Environments},
      school = {Kapteyn Astronomical Institute, RuG seyit@astro.rug.nl},
      year = {2011}
    }
    
    Hocuk, S., Schleicher, D.R.G., Spaans, M. & Cazaux, S. The impact of magnetic fields on the IMF in star-forming clouds near a supermassive black hole 2012 aap
    Vol. 545, pp. A46 
    article DOI  
    BibTeX:
    @article{2012A&A...545A..46H;,
      author = {Hocuk, S. and Schleicher, D. R. G. and Spaans, M. and Cazaux, S.},
      title = {The impact of magnetic fields on the IMF in star-forming clouds near a supermassive black hole},
      journal = {aap},
      year = {2012},
      volume = {545},
      pages = {A46},
      doi = {http://dx.doi.org/10.1051/0004-6361/201219628}
    }
    
    Hocuk, S. & Spaans, M. Star formation near an obscured AGN. Variations in the initial mass function 2011 Astronomy and Astrophysics
    Vol. 536, pp. A41 
    article DOI  
    BibTeX:
    @article{2011A&A...536A..41H,
      author = {Hocuk, S. and Spaans, M.},
      title = {Star formation near an obscured AGN. Variations in the initial mass function},
      journal = {Astronomy and Astrophysics},
      year = {2011},
      volume = {536},
      pages = {A41},
      doi = {http://dx.doi.org/10.1051/0004-6361/201117431}
    }
    
    Hocuk, S. & Spaans, M. The thermodynamics of molecular cloud fragmentation. Star formation under non-Milky Way conditions 2010 Astronomy and Astrophysics
    Vol. 510, pp. A110+ 
    article DOI  
    BibTeX:
    @article{2010A&A...510A.110H,
      author = {Hocuk, S. and Spaans, M.},
      title = {The thermodynamics of molecular cloud fragmentation. Star formation under non-Milky Way conditions},
      journal = {Astronomy and Astrophysics},
      year = {2010},
      volume = {510},
      pages = {A110+},
      doi = {http://dx.doi.org/10.1051/0004-6361/200912236}
    }
    
    Hocuk, S. & Spaans, M. The impact of X-rays on molecular cloud fragmentation and the inital mass function 2010 Astronomy and Astrophysics
    Vol. 522, pp. A24+ 
    article DOI  
    BibTeX:
    @article{2010A&A...522A..24H,
      author = {Hocuk, S. and Spaans, M.},
      title = {The impact of X-rays on molecular cloud fragmentation and the inital mass function},
      journal = {Astronomy and Astrophysics},
      year = {2010},
      volume = {522},
      pages = {A24+},
      doi = {http://dx.doi.org/10.1051/0004-6361/201015055}
    }
    
    Holmstrom, M. An Energy Conserving Parallel Hybrid Plasma Solver 2010 Arxiv preprint arXiv:1010.3291  article  
    BibTeX:
    @article{holmstrom2010energy,
      author = {Holmstrom, M.},
      title = {An Energy Conserving Parallel Hybrid Plasma Solver},
      journal = {Arxiv preprint arXiv:1010.3291},
      year = {2010}
    }
    
    Holmström, M. Handling vacuum regions in a hybrid plasma solver 2013
    Vol. 474Numerical Modeling of Space Plasma Flows (ASTRONUM2012), pp. 202 
    inproceedings URL 
    BibTeX:
    @inproceedings{holmstrom2013handling,
      author = {Holmström, M.},
      title = {Handling vacuum regions in a hybrid plasma solver},
      booktitle = {Numerical Modeling of Space Plasma Flows (ASTRONUM2012)},
      year = {2013},
      volume = {474},
      pages = {202},
      url = {http://arxiv.org/abs/1301.0272}
    }
    
    Holmström, M. Hybrid modeling of plasmas 2010 Numerical Mathematics and Advanced Applications 2009, pp. 451-458  article  
    BibTeX:
    @article{holmstrom2010hybrid,
      author = {Holmström, M.},
      title = {Hybrid modeling of plasmas},
      journal = {Numerical Mathematics and Advanced Applications 2009},
      publisher = {Springer},
      year = {2010},
      pages = {451--458}
    }
    
    Holmström, M. Asymmetries in Mars' Exosphere: Implications for X-ray and ENA Imaging 2006 Astrophysical Journal  article DOI  
    BibTeX:
    @article{Holmstrom2006,
      author = {Holmström, M.},
      title = {Asymmetries in Mars' Exosphere: Implications for X-ray and ENA Imaging},
      journal = {Astrophysical Journal},
      year = {2006},
      doi = {http://dx.doi.org/10.1007/s11214-006-9036-7}
    }
    
    Holmström, M. A Modular Software for Particle Simulations in Space Physics 2006 PARA 06  inproceedings  
    BibTeX:
    @inproceedings{Holmstrom2006a,
      author = {Holmström, M.},
      title = {A Modular Software for Particle Simulations in Space Physics},
      booktitle = {PARA 06},
      publisher = {Springer Berlin / Heidelberg},
      year = {2006}
    }
    
    Holmström, M., Ekenbäck, A., Selsis, F., Penz, T., Lammer, H. & Wurz, P. Energetic neutral atoms as the explanation for the high velocity hydrogen around HD 209458b 2008 Nature
    Vol. 451, pp. 970-972 
    article  
    BibTeX:
    @article{Holmstrom2008,
      author = {Holmström, M. and Ekenbäck, A. and Selsis, F. and Penz, T. and Lammer, H. and Wurz, P.},
      title = {Energetic neutral atoms as the explanation for the high velocity hydrogen around HD 209458b},
      journal = {Nature},
      year = {2008},
      volume = {451},
      pages = {970--972}
    }
    
    Holmström, M., Fatemi, S., Futaana, Y. & Nilsson, H. The interaction between the Moon and the solar wind 2012 Earth Planets Space
    Vol. 64(2), pp. 237-245 
    article DOI URL 
    BibTeX:
    @article{holmstrom2011interaction,
      author = {Holmström, M. and Fatemi, S. and Futaana, Y. and Nilsson, H.},
      title = {The interaction between the Moon and the solar wind},
      journal = {Earth Planets Space},
      year = {2012},
      volume = {64},
      number = {2},
      pages = {237-245},
      url = {http://arxiv.org/abs/1104.1440},
      doi = {http://dx.doi.org/10.5047/eps.2011.06.040}
    }
    
    Holmström, M., Wieser, M., Barabash, S., Futaana, Y. & Bhardwaj, A. Dynamics of solar wind protons reflected by the Moon 2010 Journal of Geophysical Research
    Vol. 115(A6), pp. A06206 
    article  
    BibTeX:
    @article{holmstrom2010dynamics,
      author = {Holmström, M. and Wieser, M. and Barabash, S. and Futaana, Y. and Bhardwaj, A.},
      title = {Dynamics of solar wind protons reflected by the Moon},
      journal = {Journal of Geophysical Research},
      publisher = {American Geophysical Union},
      year = {2010},
      volume = {115},
      number = {A6},
      pages = {A06206}
    }
    
    Huarte-Espinosa M., Alexander, P., Bolton, R., Geisbuesch, J. & Krause, M. The evolution of cluster magnetic fields probed by the SKA 2009
    Vol. 36Revista Mexicana de Astronomia y Astrofisica Conference Series, pp. 231-+ 
    inproceedings  
    BibTeX:
    @inproceedings{Huarte-EspinosaM.2009,
      author = {Huarte-Espinosa M. and Alexander, P. and Bolton, R. and Geisbuesch, J. and Krause, M.},
      title = {The evolution of cluster magnetic fields probed by the SKA},
      booktitle = {Revista Mexicana de Astronomia y Astrofisica Conference Series},
      year = {2009},
      volume = {36},
      pages = {231-+}
    }
    
    Huarte-Espinosa, M., Krause, M. & Alexander, P. 3D magnetohydrodynamic simulations of the evolution of magnetic fields in Fanaroff-Riley class II radio sources 2011 Monthly Notices of the RAS
    Vol. 417, pp. 382-399 
    article DOI  
    BibTeX:
    @article{2011MNRAS.417..382H,
      author = {Huarte-Espinosa, M. and Krause, M. and Alexander, P.},
      title = {3D magnetohydrodynamic simulations of the evolution of magnetic fields in Fanaroff-Riley class II radio sources},
      journal = {Monthly Notices of the RAS},
      year = {2011},
      volume = {417},
      pages = {382-399},
      doi = {http://dx.doi.org/10.1111/j.1365-2966.2011.19271.x}
    }
    
    Huarte-Espinosa, M., Krause, M. & Alexander, P. Interaction of Fanaroff-Riley class II radio jets with a randomly magnetized intracluster medium 2011 Monthly Notices of the RAS
    Vol. 418, pp. 1621-1639 
    article DOI  
    BibTeX:
    @article{2011MNRAS.418.1621H,
      author = {Huarte-Espinosa, M. and Krause, M. and Alexander, P.},
      title = {Interaction of Fanaroff-Riley class II radio jets with a randomly magnetized intracluster medium},
      journal = {Monthly Notices of the RAS},
      year = {2011},
      volume = {418},
      pages = {1621-1639},
      doi = {http://dx.doi.org/10.1111/j.1365-2966.2011.19545.x}
    }
    
    Huarte-Espinosa, M., Krause, M., Alexander, P. & Kaiser, C.R. Dynamical and chemical effects of FR II radio sources on the intra-cluster medium 2008 ArXiv e-prints  article  
    BibTeX:
    @article{Huarte-Espinosa2008,
      author = {Huarte-Espinosa, M. and Krause, M. and Alexander, P. and Kaiser, C.~R.},
      title = {Dynamical and chemical effects of FR II radio sources on the intra-cluster medium},
      journal = {ArXiv e-prints},
      year = {2008},
      note = {submitted to the MNRAS}
    }
    
    Hudson, R., Norris, J., Reid, L.B., Jordan IV, G.C., Weide, K. & Papka, M.E. Data-Intensive Management and Analysis for Scientific Simulations 2011
    Vol. 118 Australasian Symposium on Parallel and Distributed Computing (AusPDC 2011), pp. 13-14  
    inproceedings URL 
    BibTeX:
    @inproceedings{CRPITV118P13-14,
      author = { Hudson, R. and Norris, J. and Reid, L. B. and Jordan IV, G. C. and Weide, K. and Papka, M. E. },
      title = {Data-Intensive Management and Analysis for Scientific Simulations},
      booktitle = {Australasian Symposium on Parallel and Distributed Computing (AusPDC 2011)},
      publisher = {Australian Computer Society},
      year = { 2011 },
      volume = { 118 },
      pages = { 13-14 },
      url = { http://crpit.com/confpapers/CRPITV118Hudson.pdf }
    }
    
    Hudson, R., Norris, J., Reid, L.B., Weide, K., Jordan IV, G.C. & Papka, M.E. Experiences using smaash to manage data-intensive simulations 2011 Proceedings of the 20th international symposium on High performance distributed computing, pp. 205-216  inproceedings DOI URL 
    BibTeX:
    @inproceedings{Hudson:2011:EUS:1996130.1996158,
      author = {Hudson, Randy and Norris, John and Reid, Lynn B. and Weide, Klaus and Jordan IV, G. Cal and Papka, Michael E.},
      title = {Experiences using smaash to manage data-intensive simulations},
      booktitle = {Proceedings of the 20th international symposium on High performance distributed computing},
      publisher = {ACM},
      year = {2011},
      pages = {205--216},
      url = {http://doi.acm.org/10.1145/1996130.1996158},
      doi = {http://dx.doi.org/10.1145/1996130.1996158}
    }
    
    Hut, P. Dense Stellar Systems as Laboratories for Fundamental Physics 2006 A Life With Stars  inproceedings URL 
    BibTeX:
    @inproceedings{Hut2005,
      author = {Hut, Piet},
      title = {Dense Stellar Systems as Laboratories for Fundamental Physics},
      booktitle = {A Life With Stars},
      year = {2006},
      note = {Conference in Honor of Ed van den Heuvel 2005},
      url = {http://arxiv.org/abs/astro-ph/0601232}
    }
    
    Iapichino, L., Brüggen, M., Hillebrandt, W. & Niemeyer, J.C. The ignition process in Type Ia supernovae: numerical simulations of core temperature perturbations 2007 ArXiv e-prints
    Vol. 711Proceedings of the Catania Workshop on Nuclear and Neutrino Astrophysics (WNNA 2007) 
    inproceedings  
    BibTeX:
    @inproceedings{Iapichino2007,
      author = {Iapichino, L. and Brüggen, M. and Hillebrandt, W. and Niemeyer, J.~C.},
      title = {The ignition process in Type Ia supernovae: numerical simulations of core temperature perturbations},
      booktitle = {Proceedings of the Catania Workshop on Nuclear and Neutrino Astrophysics (WNNA 2007)},
      journal = {ArXiv e-prints},
      year = {2007},
      volume = {711}
    }
    
    Iapichino, L., Brüggen, M., Hillebrandt, W. & Niemeyer, J.C. The ignition of thermonuclear flames in Type Ia supernovae 2006 Astronomy and Astrophysics
    Vol. 450, pp. 655-666 
    article DOI  
    BibTeX:
    @article{Iapichino2006,
      author = {Iapichino, L. and Brüggen, M. and Hillebrandt, W. and Niemeyer, J.~C.},
      title = {The ignition of thermonuclear flames in Type Ia supernovae},
      journal = {Astronomy and Astrophysics},
      year = {2006},
      volume = {450},
      pages = {655-666},
      doi = {http://dx.doi.org/10.1051/0004-6361:20054052}
    }
    
    Iapichino, L. & Hillebrandt, W. The Ignition Process of Type Ia Supernovae 2005 ASP Conf. Ser. 342: 1604-2004: Supernovae as Cosmological Lighthouses, pp. 201-+  inproceedings  
    BibTeX:
    @inproceedings{Iapichino2005,
      author = {Iapichino, L. and Hillebrandt, W.},
      title = {The Ignition Process of Type Ia Supernovae},
      booktitle = {ASP Conf. Ser. 342: 1604-2004: Supernovae as Cosmological Lighthouses},
      year = {2005},
      pages = {201-+}
    }
    
    Iapichino, L. & Hillebrandt, W. Before the flame is born: the ignition process in Type Ia supernovae 2004
    Vol. MPA/P14Proceedings of the 12th workshop on ``Nuclear Astrophysics" :A tribute to an explosive astrophysicist honoring Wolfgang Hillebrandt on occassion of his 60th birthday, pp. 87-89 
    inproceedings  
    BibTeX:
    @inproceedings{Iapichino2004,
      author = {Iapichino, L. and Hillebrandt, W.},
      title = {Before the flame is born: the ignition process in Type Ia supernovae},
      booktitle = {Proceedings of the 12th workshop on ``Nuclear Astrophysics" :A tribute to an explosive astrophysicist honoring Wolfgang Hillebrandt on occassion of his 60th birthday},
      publisher = {Max-Plank-Institut fr Astrophysik},
      year = {2004},
      volume = {MPA/P14},
      pages = {87-89}
    }
    
    Iapichino, L. & Lesaffre, P. Uncertainties and robustness of the ignition process in type Ia supernovae 2010 Astronomy and Astrophysics
    Vol. 512, pp. A27 
    article DOI  
    BibTeX:
    @article{2010A&A...512A..27I,
      author = {Iapichino, L. and Lesaffre, P.},
      title = {Uncertainties and robustness of the ignition process in type Ia supernovae},
      journal = {Astronomy and Astrophysics},
      year = {2010},
      volume = {512},
      pages = {A27},
      doi = {http://dx.doi.org/10.1051/0004-6361/200913306}
    }
    
    Iliev, I., Whalen, D., Mellema, G., Ahn, K., Baek, S., Gnedin, N., Kravtsov, A., Norman, M., Raicevic, M., Reynolds, D. & others Cosmological radiative transfer comparison project--II. The radiation-hydrodynamic tests 2009 Monthly Notices of the Royal Astronomical Society
    Vol. 400(3), pp. 1283-1316 
    article  
    BibTeX:
    @article{iliev2009cosmological,
      author = {Iliev, I.T. and Whalen, D. and Mellema, G. and Ahn, K. and Baek, S. and Gnedin, N.Y. and Kravtsov, A.V. and Norman, M. and Raicevic, M. and Reynolds, D.R. and others},
      title = {Cosmological radiative transfer comparison project--II. The radiation-hydrodynamic tests},
      journal = {Monthly Notices of the Royal Astronomical Society},
      publisher = {Wiley Online Library},
      year = {2009},
      volume = {400},
      number = {3},
      pages = {1283--1316}
    }
    
    Iliev, I.T., Ciardi, B., Alvarez, M.A., Maselli, A., Ferrara, A., Gnedin, N.Y., Mellema, G., Nakamoto, T., Norman, M.L., Razoumov, A.O., Rijkhorst, E.-J., Ritzerveld, J., Shapiro, P.R., Susa, H., Umemura, M. & Whalen, D.J. Cosmological radiative transfer codes comparison project - I. The static density field tests 2006 Monthly Notices of the RAS
    Vol. 371, pp. 1057-1086 
    article DOI  
    BibTeX:
    @article{Iliev2006,
      author = {Iliev, I.~T. and Ciardi, B. and Alvarez, M.~A. and Maselli, A. and Ferrara, A. and Gnedin, N.~Y. and Mellema, G. and Nakamoto, T. and Norman, M.~L. and Razoumov, A.~O. and Rijkhorst, E.-J. and Ritzerveld, J. and Shapiro, P.~R. and Susa, H. and Umemura, M. and Whalen, D.~J.},
      title = {Cosmological radiative transfer codes comparison project - I. The static density field tests},
      journal = {Monthly Notices of the RAS},
      year = {2006},
      volume = {371},
      pages = {1057-1086},
      doi = {http://dx.doi.org/10.1111/j.1365-2966.2006.10775.x}
    }
    
    Iocco, F. Turbulence in the First Stars 2008
    Vol. 990First Stars III, pp. 260-262 
    inproceedings DOI  
    BibTeX:
    @inproceedings{Iocco2008,
      author = {Iocco, F.},
      title = {Turbulence in the First Stars},
      booktitle = {First Stars III},
      year = {2008},
      volume = {990},
      pages = {260-262},
      doi = {http://dx.doi.org/10.1063/1.2905559}
    }
    
    Ipatov, S.I., Boss, A.P. & Myhill, E.A. Triggering Presolar Cloud Collapse and Injection of Short-lived Radioisotopes by a Supernova Shock Wave: Adaptive Mesh Refinement Calculations with the FLASH Code 2007
    Vol. 38Lunar and Planetary Institute Conference Abstracts, pp. 1018-+ 
    misc  
    BibTeX:
    @misc{Ipatov2007,
      author = {Ipatov, S.~I. and Boss, A.~P. and Myhill, E.~A.},
      title = {Triggering Presolar Cloud Collapse and Injection of Short-lived Radioisotopes by a Supernova Shock Wave: Adaptive Mesh Refinement Calculations with the FLASH Code},
      booktitle = {Lunar and Planetary Institute Conference Abstracts},
      year = {2007},
      volume = {38},
      pages = {1018-+}
    }
    
    Jackson, A.P. Exploring Systematic Effects in Thermonuclear Supernovae 2011 School: State University of New York at Stony Brook  phdthesis  
    BibTeX:
    @phdthesis{jackson2011exploring,
      author = {Jackson, Aaron Perry},
      title = {Exploring Systematic Effects in Thermonuclear Supernovae},
      school = {State University of New York at Stony Brook},
      year = {2011}
    }
    
    Jackson, A.P., Calder, A.C., Townsley, D.M., Chamulak, D.A., Brown, E.F. & Timmes, F.X. Evaluating Systematic Dependencies of Type Ia Supernovae: The Influence of Deflagration to Detonation Density 2010 The Astrophysical Journal
    Vol. 720, pp. 99-103 
    article DOI URL 
    Abstract: We explore the effects of the deflagration to detonation transition (DDT) density on the production of 56 Ni in thermonuclear supernova (SN) explosions (Type??Ia supernovae). Within the DDT paradigm, the transition density sets the amount of expansion during the deflagration phase of the explosion and therefore the amount of nuclear statistical equilibrium (NSE) material produced. We employ a theoretical framework for a well-controlled statistical study of two-dimensional simulations of thermonuclear SNe with randomized initial conditions that can, with a particular choice of transition density, produce a similar average and range of 56 Ni masses to those inferred from observations. Within this framework, we utilize a more realistic "simmered" white dwarf progenitor model with a flame model and energetics scheme to calculate the amount of 56 Ni and NSE material synthesized for a suite of simulated explosions in which the transition density is varied in the range (1-3) ??10 7 g cm ???3 . We find a quadratic dependence of the NSE yield on the log of the transition density, which is determined by the competition between plume rise and stellar expansion. By considering the effect of metallicity on the transition density, we find the NSE yield decreases by 0.055 pm 0.004 M_sun for a 1 Z _sun increase in metallicity evaluated about solar metallicity. For the same change in metallicity, this result translates to a 0.067 pm 0.004 M _sun decrease in the 56 Ni yield, slightly stronger than that due to the variation in electron fraction from the initial composition. Observations testing the dependence of the yield on metallicity remain somewhat ambiguous, but the dependence we find is comparable to that inferred from some studies.
    BibTeX:
    @article{jackson2010evaluating,
      author = {Aaron P. Jackson and Alan C. Calder and Dean M. Townsley and David A. Chamulak and Edward F. Brown and F. X. Timmes},
      title = {Evaluating Systematic Dependencies of Type Ia Supernovae: The Influence of Deflagration to Detonation Density},
      journal = {The Astrophysical Journal},
      publisher = {IOP Publishing},
      year = {2010},
      volume = {720},
      pages = {99-103},
      url = {http://stacks.iop.org/0004-637X/720/i=1/a=99},
      doi = {http://dx.doi.org/10.1088/0004-637X/720/1/99}
    }
    
    Jackson, A.P., Townsley, D.M. & Calder, A.C. Power-law Wrinkling Turbulence-Flame Interaction Model for Astrophysical Flames 2014 apj
    Vol. 784(2), pp. 174 
    article URL 
    Abstract: We extend a model for turbulence-flame interactions (TFI) to consider astrophysical flames with a particular focus on combustion in Type Ia supernovae. The inertial range of the turbulent cascade is nearly always under-resolved in simulations of astrophysical flows, requiring the use of a model in order to quantify the effects of subgrid-scale wrinkling of the flame surface. We provide implementation details to extend a well-tested TFI model to low-Prandtl number flames for use in the compressible hydrodynamics code FLASH . A local, instantaneous measure of the turbulent velocity is calibrated for FLASH and verification tests are performed. Particular care is taken to consider the relation between the subgrid rms turbulent velocity and the turbulent flame speed, especially for high-intensity turbulence where the turbulent flame speed is not expected to scale with the turbulent velocity. Finally, we explore the impact of different TFI models in full-star, three-dimensional simulations of Type Ia supernovae.
    BibTeX:
    @article{0004-637X-784-2-174,
      author = {Aaron P. Jackson and Dean M. Townsley and Alan C. Calder},
      title = {Power-law Wrinkling Turbulence-Flame Interaction Model for Astrophysical Flames},
      journal = {apj},
      year = {2014},
      volume = {784},
      number = {2},
      pages = {174},
      url = {http://stacks.iop.org/0004-637X/784/i=2/a=174}
    }
    
    Jagode, H., Knuepfer, A., Dongarra, J., Jurenz, M., Mueller, M.S. & Nagel, W.E. Trace-based Performance Analysis for the Petascale Simulation Code FLASH 2009 (ICL-UT-09-01)  techreport  
    BibTeX:
    @techreport{Jagode2009,
      author = {Jagode, H. and Knuepfer, A. and Dongarra, J. and Jurenz, M. and Mueller, M. S. and Nagel, W. E.},
      title = {Trace-based Performance Analysis for the Petascale Simulation Code FLASH},
      year = {2009},
      number = {ICL-UT-09-01}
    }
    
    Jelınek, P., Karlick, M. & Murawski, K. Magnetoacoustic waves in a vertical flare current-sheet in a gravitationally stratified solar atmosphere 2012 Astron. Astrophys
    Vol. A49, pp. 546 
    article  
    BibTeX:
    @article{jelinek2012magnetoacoustic,
      author = {Jelınek, P. and Karlick, M. and Murawski, K.},
      title = {Magnetoacoustic waves in a vertical flare current-sheet in a gravitationally stratified solar atmosphere},
      journal = {Astron. Astrophys},
      year = {2012},
      volume = {A49},
      pages = {546}
    }
    
    Jelınek, P. & Murawski, K. Numerical simulations of magnetoacoustic-gravity waves in the solar coronal curved magnetic field lines structure   article  
    BibTeX:
    @article{jelineknumerical,
      author = {Jelınek, P. and Murawski, K.},
      title = {Numerical simulations of magnetoacoustic-gravity waves in the solar coronal curved magnetic field lines structure}
    }
    
    Jenkins, J., Arkatkar, I., Lakshminarasimhan, S., Shah, N., Schendel, E., Ethier, S., Chang, C., Chen, J., Kolla, H., Klasky, S. & others Analytics-Driven Lossless Data Compression for Rapid In-situ Indexing, Storing, and Querying 2012 Database and Expert Systems Applications, pp. 16-30  inproceedings  
    BibTeX:
    @inproceedings{jenkins2012analytics,
      author = {Jenkins, J. and Arkatkar, I. and Lakshminarasimhan, S. and Shah, N. and Schendel, E. and Ethier, S. and Chang, C.S. and Chen, J. and Kolla, H. and Klasky, S. and others},
      title = {Analytics-Driven Lossless Data Compression for Rapid In-situ Indexing, Storing, and Querying},
      booktitle = {Database and Expert Systems Applications},
      year = {2012},
      pages = {16--30}
    }
    
    Ji, S., Fisher, R.T., Garcia-Berro, E., Tzeferacos, P., Jordan, G., Lee, D., Loren-Aguilar, P., Cremer, P. & Behrends, J. The Post-Merger Magnetized Evolution of White Dwarf Binaries: The Double-Degenerate Channel of Sub-Chandrasekhar Type Ia Supernovae and the Formation of Magnetized White Dwarfs 2013 arXiv preprint arXiv:1302.5700  article  
    BibTeX:
    @article{ji2013post,
      author = {Ji, Suoqing and Fisher, Robert T and Garcia-Berro, Enrique and Tzeferacos, Petros and Jordan, George and Lee, Dongwook and Loren-Aguilar, Pablo and Cremer, Pascal and Behrends, Jan},
      title = {The Post-Merger Magnetized Evolution of White Dwarf Binaries: The Double-Degenerate Channel of Sub-Chandrasekhar Type Ia Supernovae and the Formation of Magnetized White Dwarfs},
      journal = {arXiv preprint arXiv:1302.5700},
      year = {2013}
    }
    
    Jin, C., Klasky, S., Hodson, S., Yu, W., Lofstead, J., Abbasi, H., Schwan, K., Wolf, M., Parashar, M., Docan, C. & others Adaptive IO System (ADIOS) 2008   article  
    BibTeX:
    @article{Jin2008,
      author = {Jin, C. and Klasky, S. and Hodson, S. and Yu, W. and Lofstead, J. and Abbasi, H. and Schwan, K. and Wolf, M. and Parashar, M. and Docan, C. and others},
      title = {Adaptive IO System (ADIOS)},
      year = {2008}
    }
    
    Jin, Y., Lakshminarasimhan, S., Shah, N., Gong, Z., Chang, C., Chen, J., Ethier, S., Kolla, H., Ku, S., Klasky, S. & others S-preconditioner for Multi-fold Data Reduction with Guaranteed User-Controlled Accuracy 2011 Data Mining (ICDM), 2011 IEEE 11th International Conference on, pp. 290-299  inproceedings  
    BibTeX:
    @inproceedings{jin2011s,
      author = {Jin, Y. and Lakshminarasimhan, S. and Shah, N. and Gong, Z. and Chang, CS and Chen, J. and Ethier, S. and Kolla, H. and Ku, S.H. and Klasky, S. and others},
      title = {S-preconditioner for Multi-fold Data Reduction with Guaranteed User-Controlled Accuracy},
      booktitle = {Data Mining (ICDM), 2011 IEEE 11th International Conference on},
      year = {2011},
      pages = {290--299}
    }
    
    Joggerst, C.C., Heger, A. & Woosley, S.E. Multidimensional Simulations of Mixing in Zero- and Solar-Metallicity SNe 2008 FIRST STARS III: First Stars II Conference
    Vol. 990(1), pp. 257-259 
    conference DOI URL 
    BibTeX:
    @conference{Joggerst2008,
      author = {Candace Church Joggerst and Alexander Heger and Stanford E. Woosley},
      title = {Multidimensional Simulations of Mixing in Zero- and Solar-Metallicity SNe},
      journal = {FIRST STARS III: First Stars II Conference},
      publisher = {AIP},
      year = {2008},
      volume = {990},
      number = {1},
      pages = {257-259},
      url = {http://link.aip.org/link/?APC/990/257/1},
      doi = {http://dx.doi.org/10.1063/1.2905557}
    }
    
    Joggerst, C.C., Almgren, A., Bell, J., Heger, A., Whalen, D. & Woosley, S.E. The Nucleosynthetic Imprint of 15-40 M _sun Primordial Supernovae on Metal-Poor Stars 2010 The Astrophysical Journal
    Vol. 709, pp. 11-26 
    article DOI  
    BibTeX:
    @article{2010ApJ...709...11J,
      author = {Joggerst, C.~C. and Almgren, A. and Bell, J. and Heger, A. and Whalen, D. and Woosley, S.~E.},
      title = {The Nucleosynthetic Imprint of 15-40 M _sun Primordial Supernovae on Metal-Poor Stars},
      journal = {The Astrophysical Journal},
      year = {2010},
      volume = {709},
      pages = {11-26},
      doi = {http://dx.doi.org/10.1088/0004-637X/709/1/11}
    }
    
    Joggerst, C.C., Woosley, S.E. & Heger, A. Mixing in Zero- and Solar-Metallicity Supernovae 2009 The Astrophysical Journal
    Vol. 693, pp. 1780-1802 
    article DOI  
    BibTeX:
    @article{Joggerst2009,
      author = {Joggerst, C.~C. and Woosley, S.~E. and Heger, A.},
      title = {Mixing in Zero- and Solar-Metallicity Supernovae},
      journal = {The Astrophysical Journal},
      year = {2009},
      volume = {693},
      pages = {1780-1802},
      note = {accepted},
      doi = {http://dx.doi.org/10.1088/0004-637X/693/2/1780}
    }
    
    Johnson, R., Zuhone, J., Jones, C., Forman, W.R. & Markevitch, M. Sloshing Gas in the Core of the Most Luminous Galaxy Cluster RXJ1347. 5-1145 2012 The Astrophysical Journal
    Vol. 751(2), pp. 95 
    article  
    BibTeX:
    @article{johnson2012sloshing,
      author = {Johnson, R.E. and Zuhone, J. and Jones, C. and Forman, W. R. and Markevitch, M.},
      title = {Sloshing Gas in the Core of the Most Luminous Galaxy Cluster RXJ1347. 5-1145},
      journal = {The Astrophysical Journal},
      publisher = {IOP Publishing},
      year = {2012},
      volume = {751},
      number = {2},
      pages = {95}
    }
    
    Jones, B. The Design of IBEAM 2003 School: University of Illinois at Urbana-Champaign  phdthesis  
    BibTeX:
    @phdthesis{Jones2003,
      author = {Jones, B.L.},
      title = {The Design of IBEAM},
      school = {University of Illinois at Urbana-Champaign},
      year = {2003}
    }
    
    Jordan IV, G.C., Fisher, R.T., Townsley, D.M., Calder, A.C., Graziani, C., Asida, S., Lamb, D.Q. & Truran, J.W. Three-Dimensional Simulations of the Deflagration Phase of the Gravitationally Confined Detonation Model of Type~Ia Supernovae 2008 The Astrophysical Journal
    Vol. 681(2), pp. 1448-1457 
    article  
    BibTeX:
    @article{Jordan2008a,
      author = {Jordan IV, G. C. and Fisher, R. T. and Townsley, D. M. and Calder, A. C. and Graziani, C. and Asida, S. and Lamb, D. Q. and Truran, J. W.},
      title = {Three-Dimensional Simulations of the Deflagration Phase of the Gravitationally Confined Detonation Model of Type~Ia Supernovae},
      journal = {The Astrophysical Journal},
      year = {2008},
      volume = {681},
      number = {2},
      pages = {1448--1457},
      note = {Accepted for publication in the Astrophysical Journal}
    }
    
    Jordan IV, G.C., Fisher, R.T., Townsley, D.M., Calder, A.C., Graziani, C., Asida, S., Lamb, D.Q. & Truran, J.W. Preliminary Results of Three-Dimensional Simulations of the Deflagration Phase of the Gravitationally Confined Detonation Model of Type Ia Supernovae 2008
    Vol. 385Numerical Modeling of Space Plasma Flows, pp. 97-+ 
    inproceedings  
    BibTeX:
    @inproceedings{Jordan2008,
      author = {Jordan IV, G. C. and Fisher, R.~T. and Townsley, D.~M. and Calder, A.~C. and Graziani, C. and Asida, S. and Lamb, D.~Q. and Truran, J.~W.},
      title = {Preliminary Results of Three-Dimensional Simulations of the Deflagration Phase of the Gravitationally Confined Detonation Model of Type Ia Supernovae},
      booktitle = {Numerical Modeling of Space Plasma Flows},
      year = {2008},
      volume = {385},
      pages = {97-+}
    }
    
    Jordan IV, G.C., Graziani, C., Fisher, R.T., Townsley, D.M., Meakin, C., Weide, K., Reid, L.B., Norris, J., Hudson, R. & Lamb, D.Q. The Detonation Mechanism of the Pulsationally Assisted Gravitationally Confined Detonation Model of Type^Ia Supernovae 2012 The Astrophysical Journal
    Vol. 759(1), pp. 53 
    article URL 
    Abstract: We describe the detonation mechanism composing the "pulsationally assisted" gravitationally confined detonation (GCD) model of Type Ia supernovae. This model is analogous to the previous GCD model reported in Jordan et al.; however, the chosen initial conditions produce a substantively different detonation mechanism, resulting from a larger energy release during the deflagration phase. The resulting final kinetic energy and 56 Ni yields conform better to observational values than is the case for the "classical" GCD models. In the present class of models, the ignition of a deflagration phase leads to a rising, burning plume of ash. The ash breaks out of the surface of the white dwarf, flows laterally around the star, and converges on the collision region at the antipodal point from where it broke out. The amount of energy released during the deflagration phase is enough to cause the star to rapidly expand, so that when the ash reaches the antipodal point, the surface density is too low to initiate a detonation. Instead, as the ash flows into the collision region (while mixing with surface fuel), the star reaches its maximally expanded state and then contracts. The stellar contraction acts to increase the density of the star, including the density in the collision region. This both raises the temperature and density of the fuel-ash mixture in the collision region and ultimately leads to thermodynamic conditions that are necessary for the Zel'dovich gradient mechanism to produce a detonation. We demonstrate feasibility of this scenario with three three-dimensional (3D), full star simulations of this model using the FLASH code. We characterized the simulations by the energy released during the deflagration phase, which ranged from 38% to 78% of the white dwarf's binding energy. We show that the necessary conditions for detonation are achieved in all three of the models.
    BibTeX:
    @article{jordan2012detonation,
      author = {Jordan IV, George C. and C. Graziani and R. T. Fisher and D. M. Townsley and C. Meakin and K. Weide and L. B. Reid and J. Norris and R. Hudson and D. Q. Lamb},
      title = {The Detonation Mechanism of the Pulsationally Assisted Gravitationally Confined Detonation Model of Type^Ia Supernovae},
      journal = {The Astrophysical Journal},
      year = {2012},
      volume = {759},
      number = {1},
      pages = {53},
      url = {http://stacks.iop.org/0004-637X/759/i=1/a=53}
    }
    
    Jordan IV, G.C., Perets, H.B., Fisher, R.T. & van Rossum, D.R. Failed-detonation Supernovae: Subluminous Low-velocity Ia Supernovae and their Kicked Remnant White Dwarfs with Iron-rich Cores 2012 The Astrophysical Journal Letters
    Vol. 761(2), pp. L23 
    article  
    BibTeX:
    @article{jordan2012failed,
      author = {Jordan IV, G. C. and Perets, H. B. and Fisher, R. T. and van Rossum, D. R.},
      title = {Failed-detonation Supernovae: Subluminous Low-velocity Ia Supernovae and their Kicked Remnant White Dwarfs with Iron-rich Cores},
      journal = {The Astrophysical Journal Letters},
      publisher = {IOP Publishing},
      year = {2012},
      volume = {761},
      number = {2},
      pages = {L23}
    }
    
    Jordan IV, G.C., Perets, H.B., Fisher, R.T. & van Rossum, D.R. Failed-detonation Supernovae: Subluminous Low-velocity Ia Supernovae and their Kicked Remnant White Dwarfs with Iron-rich Cores 2012 The Astrophysical Journal Letters
    Vol. 761(2), pp. L23 
    article DOI URL 
    BibTeX:
    @article{jordan2012failed,
      author = {Jordan IV, George C. and Hagai B. Perets and Robert T. Fisher and Daniel R. van Rossum},
      title = {Failed-detonation Supernovae: Subluminous Low-velocity Ia Supernovae and their Kicked Remnant White Dwarfs with Iron-rich Cores},
      journal = {The Astrophysical Journal Letters},
      year = {2012},
      volume = {761},
      number = {2},
      pages = {L23},
      url = {http://stacks.iop.org/2041-8205/761/i=2/a=L23},
      doi = {http://dx.doi.org/10.1088/2041-8205/761/2/L23}
    }
    
    José, J., Casanova, J., Parikh, A. & Garcia-Berro, E. Recent advances in the modelling of classical novae and type I X-ray bursts 2012
    Vol. 337(1)Journal of Physics: Conference Series, pp. 012038 
    inproceedings  
    BibTeX:
    @inproceedings{jose2012recent,
      author = {José, J. and Casanova, J. and Parikh, A. and Garcia-Berro, E.},
      title = {Recent advances in the modelling of classical novae and type I X-ray bursts},
      booktitle = {Journal of Physics: Conference Series},
      year = {2012},
      volume = {337},
      number = {1},
      pages = {012038}
    }
    
    José, J., Casanova, J., Garca-Berro, E., Hernanz, M., Shore, S.N. & Calder, A.C. Classical and Recurrent Nova Models 2013
    Vol. 281IAU Symposium, pp. 80-87 
    inproceedings DOI  
    BibTeX:
    @inproceedings{2013IAUS..281...80J,
      author = {José, J. and Casanova, J. and Garca-Berro, E. and Hernanz, M. and Shore, S.~N. and Calder, A.~C.},
      title = {Classical and Recurrent Nova Models},
      booktitle = {IAU Symposium},
      year = {2013},
      volume = {281},
      pages = {80-87},
      doi = {http://dx.doi.org/10.1017/S1743921312014743}
    }
    
    Joung, M.K.R. & Low, M.-M.M. Turbulent structure and star formation in a stratified, supernova-driven, interstellar medium 2007
    Vol. 237IAU Symposium, pp. 358-362 
    inproceedings DOI  
    BibTeX:
    @inproceedings{Joung2007,
      author = {Joung, M.~K.~R. and Low, M.-M.~M.},
      title = {Turbulent structure and star formation in a stratified, supernova-driven, interstellar medium},
      booktitle = {IAU Symposium},
      year = {2007},
      volume = {237},
      pages = {358-362},
      doi = {http://dx.doi.org/10.1017/S174392130700172X}
    }
    
    Joung, M.K.R. & Mac Low, M.-M. Turbulent Structure of a Stratified Supernova-driven Interstellar Medium 2006 Astrophysical Journal
    Vol. 653, pp. 1266-1279 
    article DOI  
    BibTeX:
    @article{Joung2006,
      author = {Joung, M.~K.~R. and Mac Low, M.-M.},
      title = {Turbulent Structure of a Stratified Supernova-driven Interstellar Medium},
      journal = {Astrophysical Journal},
      year = {2006},
      volume = {653},
      pages = {1266-1279},
      doi = {http://dx.doi.org/10.1086/508795}
    }
    
    Joung, M.K.R. & Mac Low, M.-M. Supernova-Driven Interstellar Medium Simulations: Turbulent Pressure Distribution and Kinetic Energy Spectrum 2005
    Vol. 37American Astronomical Society Meeting Abstracts, pp. 195.05 
    misc  
    BibTeX:
    @misc{2005AAS...20719505J,
      author = {Joung, M.~K.~R. and Mac Low, M.-M.},
      title = {Supernova-Driven Interstellar Medium Simulations: Turbulent Pressure Distribution and Kinetic Energy Spectrum},
      booktitle = {American Astronomical Society Meeting Abstracts},
      year = {2005},
      volume = {37},
      pages = {195.05}
    }
    
    Joung, M.R., Mac Low, M.-M. & Bryan, G.L. Dependence of Interstellar Turbulent Pressure on Supernova Rate 2009 The Astrophysical Journal
    Vol. 704, pp. 137-149 
    article DOI  
    BibTeX:
    @article{2009ApJ...704..137J,
      author = {Joung, M.~R. and Mac Low, M.-M. and Bryan, G.~L.},
      title = {Dependence of Interstellar Turbulent Pressure on Supernova Rate},
      journal = {The Astrophysical Journal},
      year = {2009},
      volume = {704},
      pages = {137-149},
      doi = {http://dx.doi.org/10.1088/0004-637X/704/1/137}
    }
    
    Junk, V., Walch, S., Heitsch, F., Burkert, A., Wetzstein, M., Schartmann, M. & Price, D. Title: Modelling Shear Flows with SPH and Grid Based Methods 2010 ArXiv e-prints  article URL 
    BibTeX:
    @article{Junk2010,
      author = {Junk, Veronika and Walch, Stefanie and Heitsch, Fabian and Burkert, Andreas and Wetzstein, Markus and Schartmann, Marc and Price, Daniel},
      title = {Title: Modelling Shear Flows with SPH and Grid Based Methods},
      journal = {ArXiv e-prints},
      year = {2010},
      url = {http://adsabs.harvard.edu/abs/2010arXiv1004.1957J}
    }
    
    Junk, V., Walch, S., Heitsch, F., Burkert, A., Wetzstein, M., Schartmann, M. & Price, D. Modelling shear flows with smoothed particle hydrodynamics and grid-based methods 2010 Monthly Notices of the Royal Astronomical Society
    Vol. 407(3), pp. 1933-1945 
    article  
    BibTeX:
    @article{junk2010modelling,
      author = {Junk, V. and Walch, S. and Heitsch, F. and Burkert, A. and Wetzstein, M. and Schartmann, M. and Price, D.},
      title = {Modelling shear flows with smoothed particle hydrodynamics and grid-based methods},
      journal = {Monthly Notices of the Royal Astronomical Society},
      publisher = {Wiley Online Library},
      year = {2010},
      volume = {407},
      number = {3},
      pages = {1933--1945}
    }
    
    Kadanoff, L.P. Excellence in Computer Simulation 2004 Computing in Science & Engineering [see also IEEE Computational Science and Engineering]
    Vol. 6(2), pp. 57-67 
    article  
    BibTeX:
    @article{Kadanoff2003,
      author = {Kadanoff, L.~P.},
      title = {Excellence in Computer Simulation},
      journal = {Computing in Science & Engineering [see also IEEE Computational Science and Engineering]},
      year = {2004},
      volume = {6},
      number = {2},
      pages = {57--67}
    }
    
    Kadanoff, L.P. Computational Scenarios 2004 Physics Today
    Vol. 57, pp. 10-11 
    article DOI  
    BibTeX:
    @article{Kadanoff2004,
      author = {Kadanoff, L.~P.},
      title = {Computational Scenarios},
      journal = {Physics Today},
      year = {2004},
      volume = {57},
      pages = {10-11},
      doi = {http://dx.doi.org/10.1063/1.1839351}
    }
    
    Karlick, M., Mészárosová, H. & Jelinek, P. Radio fiber bursts and fast magnetoacoustic wave trains 2013 Astronomy & Astrophysics
    Vol. 550 
    article  
    BibTeX:
    @article{karlicky2013radio,
      author = {Karlick, M. and Mészárosová, H. and Jelinek, P.},
      title = {Radio fiber bursts and fast magnetoacoustic wave trains},
      journal = {Astronomy & Astrophysics},
      publisher = {EDP Sciences},
      year = {2013},
      volume = {550}
    }
    
    Karonis, N., Papka, M., Binns, J., Bresnahan, J. & Link, J. Effective Use of Dedicated Wide-Area Networks for High-Performance Distributed Computing 2004   techreport  
    BibTeX:
    @techreport{karonis2004,
      author = {Karonis, N.T. and Papka, M.E. and Binns, J. and Bresnahan, J. and Link, J.M.},
      title = {Effective Use of Dedicated Wide-Area Networks for High-Performance Distributed Computing},
      year = {2004}
    }
    
    Kasen, D. Seeing the Collision of a Supernova with its Companion Star 2010 The Astrophysical Journal
    Vol. 708, pp. 1025 
    article  
    BibTeX:
    @article{kasen2010seeing,
      author = {Kasen, D.},
      title = {Seeing the Collision of a Supernova with its Companion Star},
      journal = {The Astrophysical Journal},
      publisher = {IOP Publishing},
      year = {2010},
      volume = {708},
      pages = {1025}
    }
    
    Kasen, D. & Plewa, T. Detonating Failed Deflagration model of thermonuclear supernovae II. Comparison to observations, 2007 Astrophysical Journal
    Vol. 662(1), pp. 459-471 
    article  
    BibTeX:
    @article{Kasen2007,
      author = {Kasen, D. and Plewa, T.},
      title = {Detonating Failed Deflagration model of thermonuclear supernovae II. Comparison to observations,},
      journal = {Astrophysical Journal},
      year = {2007},
      volume = {662},
      number = {1},
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    }
    
    Kasen, D. & Plewa, T. Spectral Signatures of Gravitationally Confined Thermonuclear Supernova Explosions 2005 Astrophysical Journal, Letters
    Vol. 622, pp. L41-L44 
    article DOI  
    BibTeX:
    @article{Kasen2005,
      author = {Kasen, D. and Plewa, T.},
      title = {Spectral Signatures of Gravitationally Confined Thermonuclear Supernova Explosions},
      journal = {Astrophysical Journal, Letters},
      year = {2005},
      volume = {622},
      pages = {L41-L44},
      doi = {http://dx.doi.org/10.1086/429375}
    }
    
    Kayshap, P., Srivastava, A. & Murawski, K. Study of the Kinematics and Plasma Properties of a Solar Surge Triggered by Chromospheric Activity in AR11271 2012 The Astrophysical Journal
    Vol. 763(1), pp. 24 
    article  
    BibTeX:
    @article{kayshap2012kinematics,
      author = {Kayshap, P. and Srivastava, A.K. and Murawski, K.},
      title = {Study of the Kinematics and Plasma Properties of a Solar Surge Triggered by Chromospheric Activity in AR11271},
      journal = {The Astrophysical Journal},
      publisher = {IOP Publishing},
      year = {2012},
      volume = {763},
      number = {1},
      pages = {24}
    }
    
    Kayshap, P., Srivastava, A.K. & Murawski, K. Observations of a Thermal Pulse Driven Solar Surge from AR11271 by SDO/AIA 2012 Astrophys. J  article  
    BibTeX:
    @article{ksm12,
      author = {P. Kayshap and A. K. Srivastava and K. Murawski},
      title = {Observations of a Thermal Pulse Driven Solar Surge from AR11271 by SDO/AIA},
      journal = {Astrophys. J},
      year = {2012}
    }
    
    Khazanov, G., Delamere, P., Kabin, K. & Linde, T. Fundamentals of the plasma sail concept: Magnetohydrodynamic and kinetic studies 2005 Journal of Propulsion and Power
    Vol. 21(5), pp. 853-861 
    article  
    BibTeX:
    @article{Khazanov2005,
      author = {Khazanov, G. and Delamere, P. and Kabin, K. and Linde, TJ},
      title = {Fundamentals of the plasma sail concept: Magnetohydrodynamic and kinetic studies},
      journal = {Journal of Propulsion and Power},
      publisher = {New York, NY: American Institute of Aeronautics and Astronautics, c1985-},
      year = {2005},
      volume = {21},
      number = {5},
      pages = {853--861}
    }
    
    Kim, H. Gravitationally Induced Density Wake of a Circularly Orbiting Object As an Interpretative Framework of Ubiquitous Spirals and Arcs 2011 The Astrophysical Journal
    Vol. 739, pp. 102 
    article  
    BibTeX:
    @article{kim2011gravitationally,
      author = {Kim, H.},
      title = {Gravitationally Induced Density Wake of a Circularly Orbiting Object As an Interpretative Framework of Ubiquitous Spirals and Arcs},
      journal = {The Astrophysical Journal},
      publisher = {IOP Publishing},
      year = {2011},
      volume = {739},
      pages = {102}
    }
    
    Kim, H. & Kim, W. Nonlinear Dynamical Friction in a Gaseous Medium 2009 The Astrophysical Journal
    Vol. 703, pp. 1278 
    article  
    BibTeX:
    @article{kim2009nonlinear,
      author = {Kim, H. and Kim, W.T.},
      title = {Nonlinear Dynamical Friction in a Gaseous Medium},
      journal = {The Astrophysical Journal},
      publisher = {IOP Publishing},
      year = {2009},
      volume = {703},
      pages = {1278}
    }
    
    Kim, H. & Taam, R. Probing Substellar Companions of Asymptotic Giant Branch Stars through Spirals and Arcs 2012 The Astrophysical Journal
    Vol. 744, pp. 136 
    article  
    BibTeX:
    @article{kim2012probing,
      author = {Kim, H. and Taam, R.E.},
      title = {Probing Substellar Companions of Asymptotic Giant Branch Stars through Spirals and Arcs},
      journal = {The Astrophysical Journal},
      publisher = {IOP Publishing},
      year = {2012},
      volume = {744},
      pages = {136}
    }
    
    Kim, H. & Taam, R. Probing Substellar Companions of AGB Stars through Spirals and Arcs 2011 Arxiv preprint arXiv:1110.1288  article  
    BibTeX:
    @article{kim2011probing,
      author = {Kim, H. and Taam, R.E.},
      title = {Probing Substellar Companions of AGB Stars through Spirals and Arcs},
      journal = {Arxiv preprint arXiv:1110.1288},
      year = {2011}
    }
    
    Kim, S., Zhang, Y., Son, S., Prabhakar, R., Kandemir, M., Patrick, C., Liao, W. & Choudhary, A. Automated tracing of I/O stack 2010 Recent Advances in the Message Passing Interface, pp. 72-81  article  
    BibTeX:
    @article{kim2010automated,
      author = {Kim, S. and Zhang, Y. and Son, S. and Prabhakar, R. and Kandemir, M. and Patrick, C. and Liao, W. and Choudhary, A.},
      title = {Automated tracing of I/O stack},
      journal = {Recent Advances in the Message Passing Interface},
      publisher = {Springer},
      year = {2010},
      pages = {72--81}
    }
    
    Kim, Y., Jordan IV, G.C., Graziani, C., Meyer, B.S., Lamb, D.Q. & Truran, J. The Effect of the Pre-Detonation Stellar Internal Velocity Profile on the Nucleosynthetic Yields in Type~Ia Supernova 2013 The Astrophysical Journal
    Vol. 771(1), pp. 55 
    article  
    BibTeX:
    @article{kim2013effect,
      author = {Kim, Yeunjin and Jordan IV, G. C. and Graziani, Carlo and Meyer, B. S. and Lamb, D. Q. and Truran, J.W.},
      title = {The Effect of the Pre-Detonation Stellar Internal Velocity Profile on the Nucleosynthetic Yields in Type~Ia Supernova},
      journal = {The Astrophysical Journal},
      publisher = {IOP Publishing},
      year = {2013},
      volume = {771},
      number = {1},
      pages = {55}
    }
    
    Kislyakova, K., Lammer, H., Holmström, M., Panchenko, M., Odert, P., Erkaev, N., Leitzinger, M., Khodachenko, M., Kulikov, Y., Güdel, M. & others XUV exposed, non-hydrostatic hydrogen-rich upper atmospheres of terrestrial planets II: Hydrogen coronae and ion escape 2012 arXiv preprint arXiv:1212.4710  article  
    BibTeX:
    @article{kislyakova2012xuv,
      author = {Kislyakova, K.G. and Lammer, H. and Holmström, M. and Panchenko, M. and Odert, P. and Erkaev, N.V. and Leitzinger, M. and Khodachenko, M.L. and Kulikov, Y.N. and Güdel, M. and others},
      title = {XUV exposed, non-hydrostatic hydrogen-rich upper atmospheres of terrestrial planets II: Hydrogen coronae and ion escape},
      journal = {arXiv preprint arXiv:1212.4710},
      year = {2012}
    }
    
    Kitsionas, S., Federrath, C., Klessen, R.S., Schmidt, W., Price, D.J., Dursi, L.J., Gritschneder, M., Walch, S., Piontek, R., Kim, J., Jappsen, A.-K.., Ciecielag, P. & Mac Low, M.-M.. Algorithmic comparisons of decaying, isothermal, supersonic turbulence 2009 Astronomy and Astrophysics
    Vol. 508, pp. 541-560 
    article DOI  
    BibTeX:
    @article{Kitsionas2009,
      author = {Kitsionas, S. and Federrath, C. and Klessen, R.~S. and Schmidt, W. and Price, D.~J. and Dursi, L.~J. and Gritschneder, M. and Walch, S. and Piontek, R. and Kim, J. and Jappsen, A.-K. and Ciecielag, P. and Mac Low, M.-M.},
      title = {Algorithmic comparisons of decaying, isothermal, supersonic turbulence},
      journal = {Astronomy and Astrophysics},
      year = {2009},
      volume = {508},
      pages = {541-560},
      doi = {http://dx.doi.org/10.1051/0004-6361/200811170}
    }
    
    Klassen, M., Peters, T. & Pudritz, R.E. HII region variability and pre-main-sequence evolution 2012 arXiv preprint arXiv:1208.6001  article  
    BibTeX:
    @article{klassen2012hii,
      author = {Klassen, M. and Peters, T. and Pudritz, R. E.},
      title = {HII region variability and pre-main-sequence evolution},
      journal = {arXiv preprint arXiv:1208.6001},
      year = {2012}
    }
    
    Klassen, M., Pudritz, R.E. & Peters, T. Simulating protostellar evolution and radiative feedback in the cluster environment 2012 MNRAS, pp. 2443  article DOI  
    BibTeX:
    @article{2012MNRAS.tmp.2443K,
      author = {Klassen, M. and Pudritz, R.~E. and Peters, T.},
      title = {Simulating protostellar evolution and radiative feedback in the cluster environment},
      journal = {MNRAS},
      year = {2012},
      pages = {2443},
      doi = {http://dx.doi.org/10.1111/j.1365-2966.2012.20523.x}
    }
    
    Klessen, R.S., Peters, T., Banerjee, R., Mac Low, M.-M., Galván-Madrid, R. & Keto, E.R. Modeling High-Mass Star Formation and Ultracompact H ii Regions 2011
    Vol. 270Computational Star Formation, pp. 107-114 
    inproceedings DOI  
    BibTeX:
    @inproceedings{2011IAUS..270..107K,
      author = {Klessen, R.~S. and Peters, T. and Banerjee, R. and Mac Low, M.-M. and Galván-Madrid, R. and Keto, E.~R.},
      title = {Modeling High-Mass Star Formation and Ultracompact H ii Regions},
      booktitle = {Computational Star Formation},
      year = {2011},
      volume = {270},
      pages = {107-114},
      doi = {http://dx.doi.org/10.1017/S1743921311000251}
    }
    
    Kley, W. Modelling the evolution of planets in disks 2009 ArXiv e-prints  article  
    BibTeX:
    @article{Kley2009,
      author = {Kley, W.},
      title = {Modelling the evolution of planets in disks},
      journal = {ArXiv e-prints},
      year = {2009}
    }
    
    Klingenberg, C. & Waagan, K. Relaxation solvers for ideal MHD equations-a review 2010 Acta Mathematica Scientia
    Vol. 30(2), pp. 621-632 
    article  
    BibTeX:
    @article{klingenberg2010relaxation,
      author = {Klingenberg, C. and Waagan, K.},
      title = {Relaxation solvers for ideal MHD equations-a review},
      journal = {Acta Mathematica Scientia},
      publisher = {Elsevier},
      year = {2010},
      volume = {30},
      number = {2},
      pages = {621--632}
    }
    
    Knebe, A., Knollmann, S.R., Muldrew, S.I., Pearce, F.R., Aragon-Calvo, M.A., Ascasibar, Y., Behroozi, P.S., Ceverino, D., Colombi, S., Diemand, J., Dolag, K., Falck, B.L., Fasel, P., Gardner, J., Gottlöber, S., Hsu, C.-H., Iannuzzi, F., Klypin, A., Lukić, Z., Maciejewski, M., McBride, C., Neyrinck, M.C., Planelles, S., Potter, D., Quilis, V., Rasera, Y., Read, J.I., Ricker, P.M., Roy, F., Springel, V., Stadel, J., Stinson, G., Sutter, P.M., Turchaninov, V., Tweed, D., Yepes, G. & Zemp, M. Haloes gone MAD: The Halo-Finder Comparison Project 2011 Monthly Notices of the RAS
    Vol. 415, pp. 2293-2318 
    article DOI  
    BibTeX:
    @article{2011MNRAS.415.2293K,
      author = {Knebe, A. and Knollmann, S.~R. and Muldrew, S.~I. and Pearce, F.~R. and Aragon-Calvo, M.~A. and Ascasibar, Y. and Behroozi, P.~S. and Ceverino, D. and Colombi, S. and Diemand, J. and Dolag, K. and Falck, B.~L. and Fasel, P. and Gardner, J. and Gottlöber, S. and Hsu, C.-H. and Iannuzzi, F. and Klypin, A. and Lukić, Z. and Maciejewski, M. and McBride, C. and Neyrinck, M.~C. and Planelles, S. and Potter, D. and Quilis, V. and Rasera, Y. and Read, J.~I. and Ricker, P.~M. and Roy, F. and Springel, V. and Stadel, J. and Stinson, G. and Sutter, P.~M. and Turchaninov, V. and Tweed, D. and Yepes, G. and Zemp, M. },
      title = {Haloes gone MAD: The Halo-Finder Comparison Project},
      journal = {Monthly Notices of the RAS},
      year = {2011},
      volume = {415},
      pages = {2293-2318},
      doi = {http://dx.doi.org/10.1111/j.1365-2966.2011.18858.x}
    }
    
    Koda, J., Milosavljevic, M., Shapiro, P., Nagai, D. & Nakar, E. The Cluster-Merger Shock in 1E 0657-56: Faster than a Speeding Bullet? 2008
    Vol. 393New Horizons in Astronomy, pp. 223 
    inproceedings  
    BibTeX:
    @inproceedings{koda2008cluster,
      author = {Koda, J. and Milosavljevic, M. and Shapiro, P.R. and Nagai, D. and Nakar, E.},
      title = {The Cluster-Merger Shock in 1E 0657-56: Faster than a Speeding Bullet?},
      booktitle = {New Horizons in Astronomy},
      year = {2008},
      volume = {393},
      pages = {223}
    }
    
    Konkashbaev, I., Fischer, P., Hassanein, A. & Mokhov, N. Enhancement of heat removal using concave liquid metal targets for high-power accelerators 2007 Particle Accelerator Conference, 2007. PAC. IEEE, pp. 2915-2917  inproceedings  
    BibTeX:
    @inproceedings{Konkashbaev2007,
      author = {Konkashbaev, I. and Fischer, P. and Hassanein, A. and Mokhov, NV},
      title = {Enhancement of heat removal using concave liquid metal targets for high-power accelerators},
      booktitle = {Particle Accelerator Conference, 2007. PAC. IEEE},
      year = {2007},
      pages = {2915--2917}
    }
    
    Konkol, P. & Murawski, K. Numerical simulations of few-min oscillations in a gravitationally stratified solar corona 2011 Acta Phys. Polonica
    Vol. 42(2153) 
    article  
    BibTeX:
    @article{km11,
      author = {P. Konkol and K. Murawski},
      title = {Numerical simulations of few-min oscillations in a gravitationally stratified solar corona},
      journal = {Acta Phys. Polonica},
      year = {2011},
      volume = {42},
      number = {2153}
    }
    
    Konkol, P. & Murawski, K. Verical oscillations of a solar coronal loop in a gravitationally stratified solar corona: comparison of 3D and 2D cases 2010 Acta Phys.Polonica
    Vol. 41(1369) 
    article  
    BibTeX:
    @article{km10,
      author = {P. Konkol and K. Murawski},
      title = {Verical oscillations of a solar coronal loop in a gravitationally stratified solar corona: comparison of 3D and 2D cases},
      journal = {Acta Phys.Polonica},
      year = {2010},
      volume = {41},
      number = {1369}
    }
    
    Konkol, P., Murawski, K., Lee, D. & Weide, K. Numerical Simulation of Attenuation of the Fundamental Slow Magnetoaccoustic Standing Mode in a Gravitationally Stratified Solar Coronal Arcade 2011 Astronomy & Astrophysics
    Vol. 521 
    article DOI  
    BibTeX:
    @article{KonkolEtAl_2010,
      author = {Konkol, P. and Murawski, K. and Lee, D. and Weide, K.},
      title = {Numerical Simulation of Attenuation of the Fundamental Slow Magnetoaccoustic Standing Mode in a Gravitationally Stratified Solar Coronal Arcade},
      journal = {Astronomy & Astrophysics},
      year = {2011},
      volume = {521},
      doi = {http://dx.doi.org/10.1051/0004-6361/201014367}
    }
    
    Konkol, P., Murawski, K., Lee, D. & Weide, K. Numerical simulations of the attenuation of the fundamental slow magnetoacoustic standing mode in a gravitationally stratified solar coronal arcade 2010 Astronomy and Astrophysics
    Vol. 521, pp. A34 
    article DOI  
    BibTeX:
    @article{kmlw10,
      author = {P. Konkol and K. Murawski and D. Lee and K. Weide},
      title = {Numerical simulations of the attenuation of the fundamental slow magnetoacoustic standing mode in a gravitationally stratified solar coronal arcade},
      journal = {Astronomy and Astrophysics},
      year = {2010},
      volume = {521},
      pages = {A34},
      doi = {http://dx.doi.org/10.1051/0004-6361/201014367}
    }
    
    Konkol, P., Murawski, K. & Zaqarashvili, T.V. Numerical simulations of magnetoacoustic oscillations in a gravitationally stratified solar corona 2012 Astronomy and Astrophysics
    Vol. 537(A96) 
    article  
    BibTeX:
    @article{kmz12,
      author = {P. Konkol and K. Murawski and T. V. Zaqarashvili},
      title = {Numerical simulations of magnetoacoustic oscillations in a gravitationally stratified solar corona},
      journal = {Astronomy and Astrophysics},
      year = {2012},
      volume = {537},
      number = {A96}
    }
    
    Konstandin, L., Girichidis, P., Federrath, C. & Klessen, R. A new density variance-Mach number relation for subsonic and supersonic, isothermal turbulence 2012 arXiv preprint arXiv:1206.4524  article  
    BibTeX:
    @article{konstandin2012new,
      author = {Konstandin, L. and Girichidis, P. and Federrath, C. and Klessen, R.S.},
      title = {A new density variance-Mach number relation for subsonic and supersonic, isothermal turbulence},
      journal = {arXiv preprint arXiv:1206.4524},
      year = {2012}
    }
    
    Konstandin, L., Federrath, C., Klessen, R.S. & Schmidt, W. Statistical properties of supersonic turbulence in the Lagrangian and Eulerian frameworks 2012 Journal of Fluid Mechanics
    Vol. 692, pp. 183-206 
    article DOI  
    BibTeX:
    @article{2012JFM...692..183K,
      author = {Konstandin, L. and Federrath, C. and Klessen, R.~S. and Schmidt, W.},
      title = {Statistical properties of supersonic turbulence in the Lagrangian and Eulerian frameworks},
      journal = {Journal of Fluid Mechanics},
      year = {2012},
      volume = {692},
      pages = {183-206},
      doi = {http://dx.doi.org/10.1017/jfm.2011.503}
    }
    
    Krause, M., Alexander, P., Riley, J. & Hopton, D. A new connection between the opening angle and the large-scale morphology of extragalactic radio sources 2012 arXiv preprint arXiv:1206.1778  article  
    BibTeX:
    @article{krause2012new,
      author = {Krause, M. and Alexander, P. and Riley, J. and Hopton, D.},
      title = {A new connection between the opening angle and the large-scale morphology of extragalactic radio sources},
      journal = {arXiv preprint arXiv:1206.1778},
      year = {2012}
    }
    
    Krause, M. Simulations of the interaction of cold gas with radio jets 2007 New Astronomy Review
    Vol. 51, pp. 174-178 
    article  
    BibTeX:
    @article{Krause2007,
      author = {Krause, M.},
      title = {Simulations of the interaction of cold gas with radio jets},
      journal = {New Astronomy Review},
      year = {2007},
      volume = {51},
      pages = {174-178},
      note = {Proceedings of ``The Fate of Gas in Galaxies"}
    }
    
    Krause, M. & Alexander, P. Simulations of multiphase turbulence in jet cocoons 2007 Monthly Notices of the RAS
    Vol. 376, pp. 465-478 
    article DOI  
    BibTeX:
    @article{Krause2007a,
      author = {Krause, M. and Alexander, P.},
      title = {Simulations of multiphase turbulence in jet cocoons},
      journal = {Monthly Notices of the RAS},
      year = {2007},
      volume = {376},
      pages = {465-478},
      doi = {http://dx.doi.org/10.1111/j.1365-2966.2007.11480.x}
    }
    
    Kritsuk, A.G., Nordlund, Å., Collins, D., Padoan, P., Norman, M.L., Abel, T., Banerjee, R., Federrath, C., Flock, M., Lee, D., Li, P.S., Müller, W.-C., Teyssier, R., Ustyugov, S.D., Vogel, C. & Xu, H. Comparing Numerical Methods for Isothermal Magnetized Supersonic Turbulence 2011 The Astrophysical Journal
    Vol. 737, pp. 13 
    article DOI  
    BibTeX:
    @article{2011ApJ...737...13K,
      author = {Kritsuk, A.~G. and Nordlund, Å. and Collins, D. and Padoan, P. and Norman, M.~L. and Abel, T. and Banerjee, R. and Federrath, C. and Flock, M. and Lee, D. and Li, P.~S. and Müller, W.-C. and Teyssier, R. and Ustyugov, S.~D. and Vogel, C. and Xu, H.},
      title = {Comparing Numerical Methods for Isothermal Magnetized Supersonic Turbulence},
      journal = {The Astrophysical Journal},
      year = {2011},
      volume = {737},
      pages = {13},
      doi = {http://dx.doi.org/10.1088/0004-637X/737/1/13}
    }
    
    Krueger, B., Jackson, A., Calder, A.C., Townsley, D., Brown, E. & Timmes, F.X. On Variations of the Brightness of Type Ia Supernovae With the Age of the Host Stellar Population 2010 11th Symposium on Nuclei in the Cosmos  inproceedings  
    BibTeX:
    @inproceedings{2010nuco.confE.253K,
      author = {Krueger, B. and Jackson, A. and Calder, A.~C. and Townsley, D. and Brown, E. and Timmes, F.~X.},
      title = {On Variations of the Brightness of Type Ia Supernovae With the Age of the Host Stellar Population},
      booktitle = {11th Symposium on Nuclei in the Cosmos},
      year = {2010}
    }
    
    Krueger, B.K., Jackson, A.P., Calder, A.C., Townsley, D.M., Brown, E.F. & Timmes, F.X. Evaluating Systematic Dependencies of Type Ia Supernovae: The Influence of Central Density 2012 apj
    Vol. 757, pp. 175 
    article DOI  
    BibTeX:
    @article{2012ApJ...757..175K,
      author = {Krueger, B.~K. and Jackson, A.~P. and Calder, A.~C. and Townsley, D.~M. and Brown, E.~F. and Timmes, F.~X.},
      title = {Evaluating Systematic Dependencies of Type Ia Supernovae: The Influence of Central Density},
      journal = {apj},
      year = {2012},
      volume = {757},
      pages = {175},
      doi = {http://dx.doi.org/10.1088/0004-637X/757/2/175}
    }
    
    Krueger, B.K., Jackson, A.P., Townsley, D.M., Calder, A.C., Brown, E.F. & Timmes, F.X. On Variations of the Brightness of Type Ia Supernovae with the Age of the Host Stellar Population 2010 apjl
    Vol. 719, pp. L5-L9 
    article DOI  
    BibTeX:
    @article{2010ApJ...719L...5K,
      author = {Krueger, B.~K. and Jackson, A.~P. and Townsley, D.~M. and Calder, A.~C. and Brown, E.~F. and Timmes, F.~X.},
      title = {On Variations of the Brightness of Type Ia Supernovae with the Age of the Host Stellar Population},
      journal = {apjl},
      year = {2010},
      volume = {719},
      pages = {L5-L9},
      doi = {http://dx.doi.org/10.1088/2041-8205/719/1/L5}
    }
    
    Kruijssen, J. The Current State of Cluster Formation Simulations 2013 arXiv preprint arXiv:1304.4600  article  
    BibTeX:
    @article{kruijssen2013current,
      author = {Kruijssen, JM},
      title = {The Current State of Cluster Formation Simulations},
      journal = {arXiv preprint arXiv:1304.4600},
      year = {2013}
    }
    
    Kumar, A. & Fisher, R.T. The astrochemical evolution of turbulent giant molecular clouds: physical processes and method of solution for hydrodynamic, embedded starless clouds 2013 Monthly Notices of the Royal Astronomical Society
    Vol. 431(1), pp. 455-476 
    article  
    BibTeX:
    @article{kumar2013astrochemical,
      author = {Kumar, Avinash and Fisher, Robert T},
      title = {The astrochemical evolution of turbulent giant molecular clouds: physical processes and method of solution for hydrodynamic, embedded starless clouds},
      journal = {Monthly Notices of the Royal Astronomical Society},
      publisher = {Oxford University Press},
      year = {2013},
      volume = {431},
      number = {1},
      pages = {455--476}
    }
    
    Kuranz, C. Blast-wave-driven, multidimensional Rayleigh-Taylor instability experiments 2009 School: The University of Michigan  phdthesis  
    BibTeX:
    @phdthesis{kuranz2009blast,
      author = {Kuranz, C.C.},
      title = {Blast-wave-driven, multidimensional Rayleigh-Taylor instability experiments},
      school = {The University of Michigan},
      year = {2009}
    }
    
    Kuranz, C., Drake, R.P., Grosskopf, M., Fryxell, B., Budde, A., Hansen, J., Miles, A., Plewa, T., Hearn, N. & Knauer, J. Spike morphology in blast-wave-driven instability experiments 2010 Physics of Plasmas
    Vol. 17, pp. 052709 
    article  
    BibTeX:
    @article{kuranz2010spike,
      author = {Kuranz, CC and Drake, R. Paul and Grosskopf, MJ and Fryxell, B. and Budde, A. and Hansen, JF and Miles, AR and Plewa, T. and Hearn, N. and Knauer, J.},
      title = {Spike morphology in blast-wave-driven instability experiments},
      journal = {Physics of Plasmas},
      year = {2010},
      volume = {17},
      pages = {052709}
    }
    
    Kuranz, C.C., Drake, R.P., Grosskopf, M.J., Budde, A., Krauland, C., Marion, D.C., Visco, A.J., Ditmar, J.R., Robey, H.F., Remington, B.A., Miles, A.R., Cooper, A.B.R., Sorce, C., Plewa, T., Hearn, N.C., Killebrew, K.L., Knauer, J.P., Arnett, D. & Donajkowski, T. Three-dimensional blast-wave-driven Rayleigh--Taylor instability and the effects of long-wavelength modes 2009 Physics of Plasmas
    Vol. 16(5), pp. 056310 
    article DOI URL 
    BibTeX:
    @article{Kuranz2009,
      author = {C. C. Kuranz and R. Paul Drake and M. J. Grosskopf and A. Budde and C. Krauland and D. C. Marion and A. J. Visco and J. R. Ditmar and H. F. Robey and B. A. Remington and A. R. Miles and A. B. R. Cooper and C. Sorce and T. Plewa and N. C. Hearn and K. L. Killebrew and J. P. Knauer and D. Arnett and T. Donajkowski},
      title = {Three-dimensional blast-wave-driven Rayleigh--Taylor instability and the effects of long-wavelength modes},
      journal = {Physics of Plasmas},
      publisher = {AIP},
      year = {2009},
      volume = {16},
      number = {5},
      pages = {056310},
      url = {http://link.aip.org/link/?PHP/16/056310/1},
      doi = {http://dx.doi.org/10.1063/1.3099320}
    }
    
    Kuranz, C.C., Drake, R.P., Donajowski, T.L., Dannenberg, K.K., Grosskopf, M., Kremer, D.J., Krauland, C., Marion, D.C., Robey, H.F., Remington, B.A., Hansen, J.F., Blue, B.E., Knauer, J., Plewa, T. & Hearn, N. Assessing Mix Layer Amplitude in 3D Decelerating Interface Experiments 2007 Astrophysics and Space Science
    Vol. 307, pp. 115-119 
    article DOI  
    BibTeX:
    @article{Kuranz2007,
      author = {Kuranz, C.~C. and Drake, R. Paul and Donajowski, T.~L. and Dannenberg, K.~K. and Grosskopf, M. and Kremer, D.~J. and Krauland, C. and Marion, D.~C. and Robey, H.~F. and Remington, B.~A. and Hansen, J.~F. and Blue, B.~E. and Knauer, J. and Plewa, T. and Hearn, N.},
      title = {Assessing Mix Layer Amplitude in 3D Decelerating Interface Experiments},
      journal = {Astrophysics and Space Science},
      year = {2007},
      volume = {307},
      pages = {115-119},
      doi = {http://dx.doi.org/10.1007/s10509-006-9255-0}
    }
    
    Kuranz, C.C., Drake, R.P., Harding, E.C., Grosskopf, M.J., Robey, H.F., Remington, B.A., Edwards, M.J., Miles, A.R., Perry, T.S., Blue, B.E., Plewa, T., Hearn, N.C., Knauer, J.P., Arnett, D. & Leibrandt, D.R. Two-Dimensional Blast-Wave-Driven Rayleigh-Taylor Instability: Experiment and Simulation 2009 The Astrophysical Journal
    Vol. 696, pp. 749-759 
    article DOI  
    BibTeX:
    @article{2009ApJ...696..749K,
      author = {Kuranz, C.~C. and Drake, R. Paul and Harding, E.~C. and Grosskopf, M.~J. and Robey, H.~F. and Remington, B.~A. and Edwards, M.~J. and Miles, A.~R. and Perry, T.~S. and Blue, B.~E. and Plewa, T. and Hearn, N.~C. and Knauer, J.~P. and Arnett, D. and Leibrandt, D.~R.},
      title = {Two-Dimensional Blast-Wave-Driven Rayleigh-Taylor Instability: Experiment and Simulation},
      journal = {The Astrophysical Journal},
      year = {2009},
      volume = {696},
      pages = {749-759},
      doi = {http://dx.doi.org/10.1088/0004-637X/696/1/749}
    }
    
    Kusnezov, D. How Big Can You Think? Challenges at the Frontier 2007 Computing in Science & Engineering
    Vol. 9(5), pp. 62 
    article  
    BibTeX:
    @article{Velasco2007,
      author = {Kusnezov, D.},
      title = {How Big Can You Think? Challenges at the Frontier},
      journal = {Computing in Science & Engineering},
      publisher = {IEEE Computer Society},
      year = {2007},
      volume = {9},
      number = {5},
      pages = {62}
    }
    
    Kwak, K., Henley, D. & Shelton, R. Simulations of High-velocity Clouds. I. Hydrodynamics and High-velocity High Ions 2011 The Astrophysical Journal
    Vol. 739, pp. 30 
    article  
    BibTeX:
    @article{kwak2011simulations,
      author = {Kwak, K. and Henley, D.B. and Shelton, R.L.},
      title = {Simulations of High-velocity Clouds. I. Hydrodynamics and High-velocity High Ions},
      journal = {The Astrophysical Journal},
      publisher = {IOP Publishing},
      year = {2011},
      volume = {739},
      pages = {30}
    }
    
    Kwak, K. & Shelton, R. Numerical Study of Turbulent Mixing Layers with Non-Equilibrium Ionization Calculations 2010 The Astrophysical Journal
    Vol. 719, pp. 523 
    article  
    BibTeX:
    @article{kwak2010numerical,
      author = {Kwak, K. and Shelton, R.L.},
      title = {Numerical Study of Turbulent Mixing Layers with Non-Equilibrium Ionization Calculations},
      journal = {The Astrophysical Journal},
      publisher = {IOP Publishing},
      year = {2010},
      volume = {719},
      pages = {523}
    }
    
    Kwak, K., Shelton, R.L. & Raley, E.A. The Evolution of Gas Clouds Falling in the Magnetized Galactic Halo: High-Velocity Clouds (HVCs) Originated in the Galactic Fountain 2009 The Astrophysical Journal
    Vol. 699, pp. 1775-1788 
    article DOI  
    BibTeX:
    @article{2009ApJ...699.1775K,
      author = {Kwak, K. and Shelton, R.~L. and Raley, E.~A.},
      title = {The Evolution of Gas Clouds Falling in the Magnetized Galactic Halo: High-Velocity Clouds (HVCs) Originated in the Galactic Fountain},
      journal = {The Astrophysical Journal},
      year = {2009},
      volume = {699},
      pages = {1775-1788},
      doi = {http://dx.doi.org/10.1088/0004-637X/699/2/1775}
    }
    
    Lakshminarasimhan, S., Boyuka, D.A., Pendse, S.V., Zou, X., Jenkins, J., Vishwanath, V., Papka, M.E. & Samatova, N.F. Scalable in situ scientific data encoding for analytical query processing 2013 Proceedings of the 22nd international symposium on High-performance parallel and distributed computing, pp. 1-12  inproceedings  
    BibTeX:
    @inproceedings{lakshminarasimhan2013scalable,
      author = {Lakshminarasimhan, Sriram and Boyuka, David A and Pendse, Saurabh V and Zou, Xiaocheng and Jenkins, John and Vishwanath, Venkatram and Papka, Michael E and Samatova, Nagiza F},
      title = {Scalable in situ scientific data encoding for analytical query processing},
      booktitle = {Proceedings of the 22nd international symposium on High-performance parallel and distributed computing},
      year = {2013},
      pages = {1--12}
    }
    
    Lakshminarasimhan, S., Jenkins, J., Arkatkar, I., Gong, Z., Kolla, H., Ku, S., Ethier, S., Chen, J., Chang, C., Klasky, S. & others ISABELA-QA: query-driven analytics with ISABELA-compressed extreme-scale scientific data 2011 Proceedings of 2011 International Conference for High Performance Computing, Networking, Storage and Analysis, pp. 31  inproceedings  
    BibTeX:
    @inproceedings{lakshminarasimhan2011isabela,
      author = {Lakshminarasimhan, S. and Jenkins, J. and Arkatkar, I. and Gong, Z. and Kolla, H. and Ku, S.H. and Ethier, S. and Chen, J. and Chang, CS and Klasky, S. and others},
      title = {ISABELA-QA: query-driven analytics with ISABELA-compressed extreme-scale scientific data},
      booktitle = {Proceedings of 2011 International Conference for High Performance Computing, Networking, Storage and Analysis},
      year = {2011},
      pages = {31}
    }
    
    Lal, D.V., Kraft, R.P., Randall, S.W., Forman, W.R., Nulsen, P.E., Roediger, E., ZuHone, J.A., Hardcastle, M.J., Jones, C. & Croston, J.H. Gas sloshing and radio galaxy dynamics in the core of the 3C 449 group 2013 The Astrophysical Journal
    Vol. 764(1), pp. 83 
    article  
    BibTeX:
    @article{lal2013gas,
      author = {Lal, Dharam V and Kraft, Ralph P and Randall, Scott W and Forman, William R and Nulsen, Paul EJ and Roediger, Elke and ZuHone, John A and Hardcastle, Martin J and Jones, Christine and Croston, Judith H},
      title = {Gas sloshing and radio galaxy dynamics in the core of the 3C 449 group},
      journal = {The Astrophysical Journal},
      publisher = {IOP Publishing},
      year = {2013},
      volume = {764},
      number = {1},
      pages = {83}
    }
    
    Lammer, H., Eybl, V., Kislyakova, K., Weingrill, J., Holmström, M., Khodachenko, M., Kulikov, Y., Reiners, A., Leitzinger, M., Odert, P. & others UV transit observations of EUV-heated expanded thermospheres of Earth-like exoplanets around M-stars: testing atmosphere evolution scenarios 2011 Astrophysics and Space Science
    Vol. 335(1), pp. 39-50 
    article  
    BibTeX:
    @article{lammer2011uv,
      author = {Lammer, H. and Eybl, V. and Kislyakova, KG and Weingrill, J. and Holmström, M. and Khodachenko, ML and Kulikov, Y.N. and Reiners, A. and Leitzinger, M. and Odert, P. and others},
      title = {UV transit observations of EUV-heated expanded thermospheres of Earth-like exoplanets around M-stars: testing atmosphere evolution scenarios},
      journal = {Astrophysics and Space Science},
      publisher = {Springer},
      year = {2011},
      volume = {335},
      number = {1},
      pages = {39--50}
    }
    
    Lammer, H., Güdel, M., Kulikov, Y., Ribas, I., Zaqarashvili, T., Khodachenko, M., Kislyakova, K., Gröller, H., Odert, P., Leitzinger, M. & others Variability of solar/stellar activity and magnetic field and its influence on planetary atmosphere evolution 2012 Earth Planets Space
    Vol. 63, pp. 179-199 
    article  
    BibTeX:
    @article{lammer2012variability,
      author = {Lammer, H. and Güdel, M. and Kulikov, Y. and Ribas, I. and Zaqarashvili, T.V. and Khodachenko, M.L. and Kislyakova, K.G. and Gröller, H. and Odert, P. and Leitzinger, M. and others},
      title = {Variability of solar/stellar activity and magnetic field and its influence on planetary atmosphere evolution},
      journal = {Earth Planets Space},
      year = {2012},
      volume = {63},
      pages = {179--199}
    }
    
    Lammer, H., Hanslmeier, A., Schneider, J., Stateva, I., Barthelemy, M., Belu, A., Bisikalo, D., Bonavita, M., Eybl, V., Coudé Du Foresto, V. & others Exoplanet status report: Observation, characterization and evolution of exoplanets and their host stars 2010 Solar System Research
    Vol. 44(4), pp. 290-310 
    article  
    BibTeX:
    @article{lammer2010exoplanet,
      author = {Lammer, H. and Hanslmeier, A. and Schneider, J. and Stateva, IK and Barthelemy, M. and Belu, A. and Bisikalo, D. and Bonavita, M. and Eybl, V. and Coudé Du Foresto, V. and others},
      title = {Exoplanet status report: Observation, characterization and evolution of exoplanets and their host stars},
      journal = {Solar System Research},
      publisher = {Springer},
      year = {2010},
      volume = {44},
      number = {4},
      pages = {290--310}
    }
    
    Lammer, H., Kislyakova, K., Holmström, M., Khodachenko, M. & Grießmeier, J. Hydrogen ENA-cloud observation and modeling as a tool to study star-exoplanet interaction 2011 Astrophysics and Space Science
    Vol. 335(1), pp. 9-23 
    article  
    BibTeX:
    @article{lammer2011hydrogen,
      author = {Lammer, H. and Kislyakova, KG and Holmström, M. and Khodachenko, ML and Grießmeier, J.M.},
      title = {Hydrogen ENA-cloud observation and modeling as a tool to study star-exoplanet interaction},
      journal = {Astrophysics and Space Science},
      publisher = {Springer},
      year = {2011},
      volume = {335},
      number = {1},
      pages = {9--23}
    }
    
    Latham, R., Daley, C., Liao, W., Gao, K., Ross, R., Dubey, A. & Choudhary, A. A Case Study for Scientific I/O: Improving the FLASH Astrophysics Code 2012 Computational Science and Discovery
    Vol. 5(1), pp. 015001 
    article  
    BibTeX:
    @article{Latham2012,
      author = {Latham, R. and Daley, C. and Liao, W. and Gao, K. and Ross, R. and Dubey, A. and Choudhary, A.},
      title = {A Case Study for Scientific I/O: Improving the FLASH Astrophysics Code},
      journal = {Computational Science and Discovery},
      year = {2012},
      volume = {5},
      number = {1},
      pages = {015001}
    }
    
    Latif, M., Schleicher, D. & Spaans, M. The implications of dust for high-redshift protogalaxies and the formation of binary disks 2012 Astronomy & Astrophysics
    Vol. 540 
    article  
    BibTeX:
    @article{latif2012implications,
      author = {Latif, MA and Schleicher, DRG and Spaans, M.},
      title = {The implications of dust for high-redshift protogalaxies and the formation of binary disks},
      journal = {Astronomy & Astrophysics},
      publisher = {EDP Sciences},
      year = {2012},
      volume = {540}
    }
    
    Latif, M.A. Cosmological simulations of the first galaxies 2011 School: Kapteyn Astronomical Institute  phdthesis  
    BibTeX:
    @phdthesis{2011PhDT........19L,
      author = {Latif, M.~A.},
      title = {Cosmological simulations of the first galaxies},
      school = {Kapteyn Astronomical Institute},
      year = {2011}
    }
    
    Latif, M.A., Schleicher, D.R.G., Spaans, M. & Zaroubi, S. Lyman alpha emission from the first galaxies: implications of UV backgrounds and the formation of molecules 2011 Astronomy and Astrophysics
    Vol. 532, pp. A66+ 
    article DOI  
    BibTeX:
    @article{2011A&A...532A..66L,
      author = {Latif, M.~A. and Schleicher, D.~R.~G. and Spaans, M. and Zaroubi, S.},
      title = {Lyman alpha emission from the first galaxies: implications of UV backgrounds and the formation of molecules},
      journal = {Astronomy and Astrophysics},
      year = {2011},
      volume = {532},
      pages = {A66+},
      doi = {http://dx.doi.org/10.1051/0004-6361/201117144}
    }
    
    Latif, M.A., Schleicher, D.R.G., Spaans, M. & Zaroubi, S. Lyman $ emission from the first galaxies: signatures of accretion and infall in the presence of line trapping 2011 Monthly Notices of the RAS
    Vol. 413, pp. L33-L37 
    article DOI  
    BibTeX:
    @article{2011MNRAS.413L..33L,
      author = {Latif, M.~A. and Schleicher, D.~R.~G. and Spaans, M. and Zaroubi, S.},
      title = {Lyman $ emission from the first galaxies: signatures of accretion and infall in the presence of line trapping},
      journal = {Monthly Notices of the RAS},
      year = {2011},
      volume = {413},
      pages = {L33-L37},
      doi = {http://dx.doi.org/10.1111/j.1745-3933.2011.01026.x}
    }
    
    Latif, M.A., Zaroubi, S. & Spaans, M. The impact of Lyman $ trapping on the formation of primordial objects 2011 Monthly Notices of the RAS
    Vol. 411, pp. 1659-1670 
    article DOI  
    BibTeX:
    @article{2011MNRAS.411.1659L,
      author = {Latif, M.~A. and Zaroubi, S. and Spaans, M.},
      title = {The impact of Lyman $ trapping on the formation of primordial objects},
      journal = {Monthly Notices of the RAS},
      year = {2011},
      volume = {411},
      pages = {1659-1670},
      doi = {http://dx.doi.org/10.1111/j.1365-2966.2010.17796.x}
    }
    
    Lazzati, D., Blackwell, C., Morsony, B. & Begelman, M. X-ray flares from propagation instabilities in long gamma-ray burst jets 2011 Monthly Notices of the Royal Astronomical Society: Letters
    Vol. 411(1), pp. L16-L20 
    article  
    BibTeX:
    @article{lazzati2011x,
      author = {Lazzati, D. and Blackwell, C.H. and Morsony, B.J. and Begelman, M.C.},
      title = {X-ray flares from propagation instabilities in long gamma-ray burst jets},
      journal = {Monthly Notices of the Royal Astronomical Society: Letters},
      publisher = {Wiley Online Library},
      year = {2011},
      volume = {411},
      number = {1},
      pages = {L16--L20}
    }
    
    Lazzati, D., Morsony, B. & Begelman, M. High-efficiency photospheric emission of long-duration gamma-ray burst jets: the effect of the viewing angle 2011 The Astrophysical Journal
    Vol. 732, pp. 34 
    article  
    BibTeX:
    @article{lazzati2011high,
      author = {Lazzati, D. and Morsony, B.J. and Begelman, M.C.},
      title = {High-efficiency photospheric emission of long-duration gamma-ray burst jets: the effect of the viewing angle},
      journal = {The Astrophysical Journal},
      publisher = {IOP Publishing},
      year = {2011},
      volume = {732},
      pages = {34}
    }
    
    Lazzati, D., Morsony, B. & Begelman, M. Short-duration gamma-ray bursts from off-axis collapsars 2010 The Astrophysical Journal
    Vol. 717, pp. 239 
    article  
    BibTeX:
    @article{lazzati2010short,
      author = {Lazzati, D. and Morsony, B.J. and Begelman, M.C.},
      title = {Short-duration gamma-ray bursts from off-axis collapsars},
      journal = {The Astrophysical Journal},
      publisher = {IOP Publishing},
      year = {2010},
      volume = {717},
      pages = {239}
    }
    
    Lazzati, D., Morsony, B., Blackwell, C. & Begelman, M. Unifying the Zoo of Jet-Driven Stellar Explosions 2012 The Astrophysical Journal
    Vol. 750(1), pp. 68 
    article  
    BibTeX:
    @article{lazzati2012unifying,
      author = {Lazzati, D. and Morsony, B.J. and Blackwell, C.H. and Begelman, M.C.},
      title = {Unifying the Zoo of Jet-Driven Stellar Explosions},
      journal = {The Astrophysical Journal},
      publisher = {IOP Publishing},
      year = {2012},
      volume = {750},
      number = {1},
      pages = {68}
    }
    
    Lazzati, D., Morsony, B.J., Margutti, R. & Begelman, M.C. Photospheric emission as the dominant radiation mechanism in long-duration gamma-ray bursts 2013 The Astrophysical Journal
    Vol. 765(2), pp. 103 
    article  
    BibTeX:
    @article{lazzati2013photospheric,
      author = {Lazzati, Davide and Morsony, Brian J and Margutti, Raffaella and Begelman, Mitchell C},
      title = {Photospheric emission as the dominant radiation mechanism in long-duration gamma-ray bursts},
      journal = {The Astrophysical Journal},
      publisher = {IOP Publishing},
      year = {2013},
      volume = {765},
      number = {2},
      pages = {103}
    }
    
    Lazzati, D., Morsony, B.J. & Begelman, M.C. Very High Efficiency Photospheric Emission in Long-Duration $-Ray Bursts 2009 The Astrophysical Journal Letters
    Vol. 700, pp. L47-L50 
    article DOI  
    BibTeX:
    @article{Lazzati2009,
      author = {Lazzati, D. and Morsony, B.~J. and Begelman, M.~C.},
      title = {Very High Efficiency Photospheric Emission in Long-Duration $-Ray Bursts},
      journal = {The Astrophysical Journal Letters},
      year = {2009},
      volume = {700},
      pages = {L47-L50},
      doi = {http://dx.doi.org/10.1088/0004-637X/700/1/L47}
    }
    
    Lazzati, D., Morsony, B.J. & Begelman, M.C. Gamma-Ray Burst jet dynamics and their interaction with the progenitor star 2006 Proceedings of the Royal Society dscussion meeting "Recent developments in the study of Gamma-ray bursts  article  
    BibTeX:
    @article{Lazzati2006,
      author = {Lazzati, D. and Morsony, B.~J. and Begelman, M.~C.},
      title = {Gamma-Ray Burst jet dynamics and their interaction with the progenitor star},
      journal = {Proceedings of the Royal Society dscussion meeting "Recent developments in the study of Gamma-ray bursts},
      year = {2006}
    }
    
    Lee, C., Malony, A. & Morris, A. TAUmon: scalable online performance data analysis in TAU 2011 Euro-Par 2010 Parallel Processing Workshops, pp. 493-499  inproceedings  
    BibTeX:
    @inproceedings{lee2011taumon,
      author = {Lee, C. and Malony, A. and Morris, A.},
      title = {TAUmon: scalable online performance data analysis in TAU},
      booktitle = {Euro-Par 2010 Parallel Processing Workshops},
      year = {2011},
      pages = {493--499}
    }
    
    Lee, D. A solution accurate, efficient and stable unsplit staggered mesh scheme for three dimensional magnetohydrodynamics 2013 Journal of Computational Physics
    Vol. 243, pp. 269-292 
    article  
    BibTeX:
    @article{lee2013solution,
      author = {Lee, Dongwook},
      title = {A solution accurate, efficient and stable unsplit staggered mesh scheme for three dimensional magnetohydrodynamics},
      journal = {Journal of Computational Physics},
      publisher = {Elsevier},
      year = {2013},
      volume = {243},
      pages = {269-292}
    }
    
    Lee, D. An Upwind Slope Limiter for PPM that Preserves Monotonicity in Magnetohydrodynamics 2010 Proceeding of the 5th International Conference on Numerical Modeling of Space Plasma Physics, Astronum  inproceedings  
    BibTeX:
    @inproceedings{Lee_Astronum_2010,
      author = {Lee, D.},
      title = {An Upwind Slope Limiter for PPM that Preserves Monotonicity in Magnetohydrodynamics},
      journal = {Proceeding of the 5th International Conference on Numerical Modeling of Space Plasma Physics, Astronum},
      year = {2010}
    }
    
    Lee, D. An Unsplit Staggered Mesh Scheme for Multidimensional Magnetohydrodynamics: A Staggered Dissipation-control Differencing Algorithm 2006 School: University of Maryland, College Park  phdthesis  
    BibTeX:
    @phdthesis{Lee_2006,
      author = {Lee, D.},
      title = {An Unsplit Staggered Mesh Scheme for Multidimensional Magnetohydrodynamics: A Staggered Dissipation-control Differencing Algorithm},
      school = {University of Maryland, College Park},
      year = {2006}
    }
    
    Lee, D. & Deane, A. Parallel Computational Fluid Dynamics 2005: Theory and Applications 2006 Parallel Computational Fluid Dynamics, pp. 243-250  inbook  
    BibTeX:
    @inbook{Lee2006,
      author = {Lee, D. and Deane, A.},
      title = {Parallel Computational Fluid Dynamics 2005: Theory and Applications},
      journal = {Parallel Computational Fluid Dynamics},
      publisher = {Elsevier},
      year = {2006},
      pages = {243--250}
    }
    
    Lee, D. & Deane, A. A Parallel Unsplit Staggered Mesh Algorithm for Magnetohydrodynamics 2005 Proceeding of the 17th International Conference on Parallel Computational Fluid Dynamics  inproceedings  
    BibTeX:
    @inproceedings{LeeDeane_ParComut_2005,
      author = {Lee, D. and Deane, A.},
      title = {A Parallel Unsplit Staggered Mesh Algorithm for Magnetohydrodynamics},
      journal = {Proceeding of the 17th International Conference on Parallel Computational Fluid Dynamics},
      year = {2005}
    }
    
    Lee, D., Deane, A. & Federrath, C. A New Multidimensional Unsplit MHD Solver in FLASH3 2008 Proceeding of the 3rd International Conference on Numerical Modeling of Space Plasma Physics, Astronum  inproceedings  
    BibTeX:
    @inproceedings{LeeEtAl_Astronum_2008,
      author = {Lee, D. and Deane, A. and Federrath, C.},
      title = {A New Multidimensional Unsplit MHD Solver in FLASH3},
      journal = {Proceeding of the 3rd International Conference on Numerical Modeling of Space Plasma Physics, Astronum},
      year = {2008}
    }
    
    Lee, D. & Deane, A.E. An unsplit staggered mesh scheme for multidimensional magnetohydrodynamics 2009 Journal of Computational Physics
    Vol. 228(4), pp. 952-975 
    article DOI  
    BibTeX:
    @article{LeeDeane_2009,
      author = {Lee, Dongwook and Deane, Anil E.},
      title = {An unsplit staggered mesh scheme for multidimensional magnetohydrodynamics},
      journal = {Journal of Computational Physics},
      publisher = {Elsevier},
      year = {2009},
      volume = {228},
      number = {4},
      pages = {952--975},
      doi = {http://dx.doi.org/10.1016/j.jcp.2008.08.026}
    }
    
    Lee, D., Dubey, A., Olson, K., Weide, K. & Antypas, K. Exploiting the Extensibility of the FLASH code Architecture for Unsplit Time Integration 2010 Proceeding of the 4th International Conference on Numerical Modeling of Space Plasma Physics, Astronum
    Vol. 429Numerical Modeling of Space Plasma Flows: Astronum-2009, pp. 247 - 252 
    inproceedings  
    BibTeX:
    @inproceedings{LeeEtAl_Astronum_2009,
      author = {Lee, Dongwook and Dubey, Anshu and Olson, Kevin and Weide, Klaus and Antypas, Katerina},
      title = {Exploiting the Extensibility of the FLASH code Architecture for Unsplit Time Integration},
      booktitle = {Numerical Modeling of Space Plasma Flows: Astronum-2009},
      journal = {Proceeding of the 4th International Conference on Numerical Modeling of Space Plasma Physics, Astronum},
      year = {2010},
      volume = {429},
      pages = {247 - 252}
    }
    
    Lee, D., Gopal, S. & Mohapatra, P. An Implicit Solver on a Parallel Block-Structured Adaptive Mesh Grid for FLASH 2011 To Appear, Proceeding of the 6th International Conference on Numerical Modeling of Space Plasma Physics, Astronum  inproceedings  
    BibTeX:
    @inproceedings{Lee_Astronum_2011,
      author = {Lee, D. and Gopal, S. and Mohapatra, P.},
      title = {An Implicit Solver on a Parallel Block-Structured Adaptive Mesh Grid for FLASH},
      journal = {To Appear, Proceeding of the 6th International Conference on Numerical Modeling of Space Plasma Physics, Astronum},
      year = {2011}
    }
    
    Lee, J. Supporting I/O for remote visualizationof high-performance scientific simulations 2003 School: University of Illinois  phdthesis  
    BibTeX:
    @phdthesis{Lee2003,
      author = {Lee, J.},
      title = {Supporting I/O for remote visualizationof high-performance scientific simulations},
      school = {University of Illinois},
      year = {2003}
    }
    
    Lee, D., Xia, G., Daley, C., Dubey, A., Gopal, S., Graziani, C., Lamb, D.Q. & Weide, K. Progress in Development of HEDP Capabilities in FLASH's Unsplit Staggered Mesh MHD Solver 2011 HEDLA 2010: Astrophysics and Space Science Special Issue
    Vol. 336, pp. 157-162 
    article URL 
    BibTeX:
    @article{Lee2010,
      author = {Lee, D. and Xia, G. and Daley, C. and Dubey, A. and Gopal, S. and Graziani, C. and Lamb, D. Q. and Weide, K.},
      title = {Progress in Development of HEDP Capabilities in FLASH's Unsplit Staggered Mesh MHD Solver},
      journal = {HEDLA 2010: Astrophysics and Space Science Special Issue},
      publisher = {Springer Netherlands},
      year = {2011},
      volume = {336},
      pages = {157-162},
      url = {http://dx.doi.org/10.1007/s10509-011-0654-5}
    }
    
    Li, J., Liao, W.-K., Choudhary, A., Ross, R., Thakur, R., Gropp, W., Latham, R., Siegel, A., Gallagher, J. & Zingale, M. Parallel netCDF: A High-Performance Scientific I/O Interface 2003 SC '03: Proceedings of the 2003 ACM/IEEE conference on Supercomputing, pp. 39  inproceedings URL 
    BibTeX:
    @inproceedings{Li2003,
      author = {Li, J. and Liao, W-K. and Choudhary, A. and Ross, R. and Thakur, R. and Gropp, W. and Latham, R. and Siegel, A. and Gallagher, J.B. and Zingale, M.},
      title = {Parallel netCDF: A High-Performance Scientific I/O Interface},
      booktitle = {SC '03: Proceedings of the 2003 ACM/IEEE conference on Supercomputing},
      publisher = {IEEE Computer Society},
      year = {2003},
      pages = {39},
      url = {http://portal.acm.org/citation.cfm?id=1048935.1050189#}
    }
    
    Li, L. & Malony, A. Automatic Performance Diagnosis of Parallel Computations with Compositional Models 2007 Parallel and Distributed Processing Symposium, 2007. IPDPS 2007. IEEE International, pp. 1-8  article  
    BibTeX:
    @article{Li2007,
      author = {Li, L. and Malony, A.D.},
      title = {Automatic Performance Diagnosis of Parallel Computations with Compositional Models},
      journal = {Parallel and Distributed Processing Symposium, 2007. IPDPS 2007. IEEE International},
      year = {2007},
      pages = {1--8}
    }
    
    Li, M., Vazhkudai, S., Butt, A., Meng, F., Ma, X., Kim, Y., Engelmann, C. & Shipman, G. Functional partitioning to optimize end-to-end performance on many-core architectures 2010 Proceedings of the 2010 ACM/IEEE International Conference for High Performance Computing, Networking, Storage and Analysis, pp. 1-12  inproceedings  
    BibTeX:
    @inproceedings{li2010functional,
      author = {Li, M. and Vazhkudai, S.S. and Butt, A.R. and Meng, F. and Ma, X. and Kim, Y. and Engelmann, C. and Shipman, G.},
      title = {Functional partitioning to optimize end-to-end performance on many-core architectures},
      booktitle = {Proceedings of the 2010 ACM/IEEE International Conference for High Performance Computing, Networking, Storage and Analysis},
      year = {2010},
      pages = {1--12}
    }
    
    Li, S. Comparison of refinement criteria for structured adaptive mesh refinement 2010 Journal of computational and applied mathematics
    Vol. 233(12), pp. 3139-3147 
    article  
    BibTeX:
    @article{li2010comparison,
      author = {Li, S.},
      title = {Comparison of refinement criteria for structured adaptive mesh refinement},
      journal = {Journal of computational and applied mathematics},
      publisher = {Elsevier},
      year = {2010},
      volume = {233},
      number = {12},
      pages = {3139--3147}
    }
    
    Li, X. & Parashar, M. HRMS: Hybrid Runtime Management Strategies for Large-Scale Parallel Adaptive Applications 2009 Advanced Computational Infrastructures for Parallel and Distributed Applications
    Vol. 5, pp. 437 
    article  
    BibTeX:
    @article{Li2009,
      author = {Li, X. and Parashar, M.},
      title = {HRMS: Hybrid Runtime Management Strategies for Large-Scale Parallel Adaptive Applications},
      journal = {Advanced Computational Infrastructures for Parallel and Distributed Applications},
      publisher = {Wiley-Interscience},
      year = {2009},
      volume = {5},
      pages = {437}
    }
    
    Liao, W. Design and Evaluation of MPI File Domain Partitioning Methods under Extent-Based File Locking Protocol 2011 Parallel and Distributed Systems, IEEE Transactions on
    Vol. 22(2), pp. 260-272 
    article  
    BibTeX:
    @article{liao2011design,
      author = {Liao, W.},
      title = {Design and Evaluation of MPI File Domain Partitioning Methods under Extent-Based File Locking Protocol},
      journal = {Parallel and Distributed Systems, IEEE Transactions on},
      publisher = {IEEE},
      year = {2011},
      volume = {22},
      number = {2},
      pages = {260--272}
    }
    
    Liao, W., Coloma, K., Choudhary, A. & Ward, L. Cooperative Client-Side File Caching for MPI Applications 2007 International Journal of High Performance Computing Applications
    Vol. 21(2), pp. 144 
    article  
    BibTeX:
    @article{Liao2007,
      author = {Liao, W. and Coloma, K. and Choudhary, A. and Ward, L.},
      title = {Cooperative Client-Side File Caching for MPI Applications},
      journal = {International Journal of High Performance Computing Applications},
      year = {2007},
      volume = {21},
      number = {2},
      pages = {144}
    }
    
    Liao, W., Coloma, K., Choudhary, A. & Ward, L. Cooperative Write-Behind Data Buffering for MPI I/O 2005
    Vol. 3666Recent Advances in Parallel Virtual Machine and Message Passing Interface, pp. 102-109 
    inproceedings DOI  
    BibTeX:
    @inproceedings{Liao2005,
      author = {Liao, W. and Coloma, K. and Choudhary, A. and Ward, L.},
      title = {Cooperative Write-Behind Data Buffering for MPI I/O},
      booktitle = {Recent Advances in Parallel Virtual Machine and Message Passing Interface},
      publisher = {Springer Berlin / Heidelberg},
      year = {2005},
      volume = {3666},
      pages = {102--109},
      note = {Proceedings of the Euro PVM/MPI Conference},
      doi = {http://dx.doi.org/10.1007/11557265}
    }
    
    Liao, W.-k. & Choudhary, A. Dynamically adapting file domain partitioning methods for collective I/O based on underlying parallel file system locking protocols 2008 SC '08: Proceedings of the 2008 ACM/IEEE conference on Supercomputing  inproceedings DOI  
    BibTeX:
    @inproceedings{Liao2008,
      author = {Liao, Wei-keng and Choudhary, Alok},
      title = {Dynamically adapting file domain partitioning methods for collective I/O based on underlying parallel file system locking protocols},
      booktitle = {SC '08: Proceedings of the 2008 ACM/IEEE conference on Supercomputing},
      publisher = {IEEE Press},
      year = {2008},
      doi = {http://doi.acm.org/10.1145/1413370.1413374}
    }
    
    Liedahl, D.A. & Brown, G.V. Proposed wavelength measurements of silicon X-ray spectra: Application to Vela X-1 2008 Canadian Journal of Physics
    Vol. 86, pp. 183-189 
    article DOI  
    BibTeX:
    @article{Liedahl2008,
      author = {Liedahl, D.~A. and Brown, G.~V.},
      title = {Proposed wavelength measurements of silicon X-ray spectra: Application to Vela X-1},
      journal = {Canadian Journal of Physics},
      year = {2008},
      volume = {86},
      pages = {183-189},
      doi = {http://dx.doi.org/10.1139/P07-163}
    }
    
    Linde, T. A practical, general-purpose, two-state HLL Riemann solver for hyperbolic conservation laws 2002 International Journal for Numerical Methods in Fluids
    Vol. 40 
    article  
    BibTeX:
    @article{Linde2002a,
      author = {Linde, T.},
      title = {A practical, general-purpose, two-state HLL Riemann solver for hyperbolic conservation laws},
      journal = {International Journal for Numerical Methods in Fluids},
      publisher = {John Wiley & Sons, Ltd. Chichester, UK},
      year = {2002},
      volume = {40}
    }
    
    Lindner, C.C., Milosavljević, M., Couch, S.M. & Kumar, P. Collapsar Accretion and the Gamma-Ray Burst X-Ray Light Curve 2010 The Astrophysical Journal
    Vol. 713(2), pp. 800-815 
    article DOI URL 
    Abstract: We present axisymmetric hydrodynamical simulations of the long-term accretion of a rotating gamma-ray burst (GRB) progenitor star, a "collapsar," onto the central compact object, which we take to be a black hole. The simulations were carried out with the adaptive-mesh-refinement code FLASH in two spatial dimensions and with an explicit shear viscosity. The evolution of the central accretion rate exhibits phases reminiscent of the long GRB ??-ray and X-ray light curve, which lends support to the proposal by Kumar et al. that the luminosity is modulated by the central accretion rate. In the first "prompt" phase, the black hole acquires most of its final mass through supersonic quasiradial accretion occurring at a steady rate of ~0.2 M sun s-1. After a few tens of seconds, an accretion shock sweeps outward through the star. The formation and outward expansion of the accretion shock is accompanied with a sudden and rapid power-law decline in the central accretion rate M??? t^-2.8, which resembles the L X vprop t -3 decline observed in the X-ray light curves. The collapsed, shock-heated stellar envelope settles into a thick, low-mass equatorial disk embedded within a massive, pressure-supported atmosphere. After a few hundred seconds, the inflow of low angular momentum material in the axial funnel reverses into an outflow from the thick disk. Meanwhile, the rapid decline of the accretion rate slows down, which is potentially suggestive of the "plateau" phase in the X-ray light curve. We complement our adiabatic simulations with an analytical model that takes into account the cooling by neutrino emission and estimate that the duration of the prompt phase can be ~20 s. The model suggests that the steep decline in GRB X-ray light curves is triggered by the circularization of the infalling stellar envelope at radii where the virial temperature is below 1010 K, such that neutrino cooling is inefficient and an outward expansion of the accretion shock becomes imminent; GRBs with longer prompt ??-ray emission should have more slowly rotating envelopes.
    BibTeX:
    @article{Lindner:2010ip,
      author = {Lindner, Christopher C and Milosavljević, Milov s and Couch, Sean M. and Kumar, Pawan},
      title = {Collapsar Accretion and the Gamma-Ray Burst X-Ray Light Curve},
      journal = {The Astrophysical Journal},
      year = {2010},
      volume = {713},
      number = {2},
      pages = {800--815},
      url = {http://adsabs.harvard.edu/cgi-bin/nph-data_query?bibcode=2010ApJ...713..800L&link_type=ABSTRACT},
      doi = {http://dx.doi.org/10.1088/0004-637X/713/2/800}
    }
    
    Lindner, C.C., Milosavljević, M., Shen, R. & Kumar, P. Simulations of Accretion Powered Supernovae in the Progenitors of Gamma-Ray Bursts 2012 The Astrophysical Journal
    Vol. 750(2), pp. 163 
    article  
    BibTeX:
    @article{lindner2012simulations,
      author = {Lindner, C. C. and Milosavljević, M. and Shen, R. and Kumar, P.},
      title = {Simulations of Accretion Powered Supernovae in the Progenitors of Gamma-Ray Bursts},
      journal = {The Astrophysical Journal},
      publisher = {IOP Publishing},
      year = {2012},
      volume = {750},
      number = {2},
      pages = {163}
    }
    
    Liu, S., Guillochon, J., Lin, D. & Ramirez-Ruiz, E. On the Survivability and Metamorphism of Tidally Disrupted Giant Planets: The Role of Dense Cores 2012 The Astrophysical Journal
    Vol. 762(1), pp. 37 
    article  
    BibTeX:
    @article{liu2012survivability,
      author = {Liu, S.F. and Guillochon, J. and Lin, D.N.C. and Ramirez-Ruiz, E.},
      title = {On the Survivability and Metamorphism of Tidally Disrupted Giant Planets: The Role of Dense Cores},
      journal = {The Astrophysical Journal},
      publisher = {IOP Publishing},
      year = {2012},
      volume = {762},
      number = {1},
      pages = {37}
    }
    
    Lofstead, J.F., Klasky, S., Schwan, K., Podhorszki, N. & Jin, C. Flexible IO and integration for scientific codes through the adaptable IO system (ADIOS) 2008 CLADE '08: Proceedings of the 6th international workshop on Challenges of large applications in distributed environments, pp. 15-24  inproceedings DOI  
    BibTeX:
    @inproceedings{Lofstead2008,
      author = {Lofstead, Jay F. and Klasky, Scott and Schwan, Karsten and Podhorszki, Norbert and Jin, Chen},
      title = {Flexible IO and integration for scientific codes through the adaptable IO system (ADIOS)},
      booktitle = {CLADE '08: Proceedings of the 6th international workshop on Challenges of large applications in distributed environments},
      publisher = {ACM},
      year = {2008},
      pages = {15--24},
      doi = {http://doi.acm.org/10.1145/1383529.1383533}
    }
    
    Logan, J. & Dickens, P. Interval Based I/O: A New Approach to Providing High Performance Parallel I/O 2011 Parallel Processing Workshops (ICPPW), 2011 40th International Conference on, pp. 289-297  inproceedings  
    BibTeX:
    @inproceedings{logan2011interval,
      author = {Logan, J. and Dickens, P.},
      title = {Interval Based I/O: A New Approach to Providing High Performance Parallel I/O},
      booktitle = {Parallel Processing Workshops (ICPPW), 2011 40th International Conference on},
      year = {2011},
      pages = {289--297}
    }
    
    Louis, S. & de Supinski, B.R. BlueGene/L: Early Application Scaling Results 2005 NNSA ASC Principal Investigator Meeting & BG/L Consortium System Software Workshop  conference  
    BibTeX:
    @conference{Louis,
      author = {Louis, S. and de Supinski, B. R.},
      title = {BlueGene/L: Early Application Scaling Results},
      booktitle = {NNSA ASC Principal Investigator Meeting & BG/L Consortium System Software Workshop},
      year = {2005}
    }
    
    Lu, Z. & Wang, Q. Galactic coronae in the intracluster environment: semiconfined stellar-feedback-driven outflows 2011 Monthly Notices of the Royal Astronomical Society
    Vol. 413(1), pp. 347-358 
    article  
    BibTeX:
    @article{lu2011galactic,
      author = {Lu, Z. and Wang, Q.D.},
      title = {Galactic coronae in the intracluster environment: semiconfined stellar-feedback-driven outflows},
      journal = {Monthly Notices of the Royal Astronomical Society},
      publisher = {Wiley Online Library},
      year = {2011},
      volume = {413},
      number = {1},
      pages = {347--358}
    }
    
    López-Cámara, D., Morsony, B.J., Begelman, M.C. & Lazzati, D. Three-dimensional Adaptive Mesh Refinement Simulations of Long-duration Gamma-Ray Burst Jets inside Massive Progenitor Stars 2013 The Astrophysical Journal
    Vol. 767(1), pp. 19 
    article  
    BibTeX:
    @article{lopez2013three,
      author = {López-Cámara, D and Morsony, Brian J and Begelman, Mitchell C and Lazzati, Davide},
      title = {Three-dimensional Adaptive Mesh Refinement Simulations of Long-duration Gamma-Ray Burst Jets inside Massive Progenitor Stars},
      journal = {The Astrophysical Journal},
      publisher = {IOP Publishing},
      year = {2013},
      volume = {767},
      number = {1},
      pages = {19}
    }
    
    Mac Low, M.-M., Hill, A.S., Joung, M.R., Waagan, K., Klingenberg, C., Wood, K., Benjamin, R.A., Federrath, C. & Haffner, L.M. MHD simulations of a supernova-driven ISM and the warm ionized medium using a positivity preserving ideal MHD scheme 2011 ArXiv e-prints  article  
    BibTeX:
    @article{2011arXiv1110.6527M,
      author = {Mac Low, M.-M. and Hill, A.~S. and Joung, M.~R. and Waagan, K. and Klingenberg, C. and Wood, K. and Benjamin, R.~A. and Federrath, C. and Haffner, L.~M.},
      title = {MHD simulations of a supernova-driven ISM and the warm ionized medium using a positivity preserving ideal MHD scheme},
      journal = {ArXiv e-prints},
      year = {2011}
    }
    
    Mac Low, M.-M., Toraskar, J., Oishi, J.S. & Abel, T. Dynamical Expansion of H II Regions from Ultracompact to Compact Sizes in Turbulent, Self-Gravitating Molecular Clouds 2006 Astrophysical Journal
    Vol. 653, pp. 1266+ 
    article  
    BibTeX:
    @article{Mac2006,
      author = {Mac Low, M.-M. and Toraskar, J. and Oishi, J.~S. and Abel, T.},
      title = {Dynamical Expansion of H II Regions from Ultracompact to Compact Sizes in Turbulent, Self-Gravitating Molecular Clouds},
      journal = {Astrophysical Journal},
      year = {2006},
      volume = {653},
      pages = {1266+}
    }
    
    MacFadyen, A.I. & Milosavljević, M. An Eccentric Circumbinary Accretion Disk and the Detection of Binary Massive Black Holes 2008 Astrophysical Journal
    Vol. 672, pp. 83-93 
    article DOI  
    BibTeX:
    @article{MacFadyen2008,
      author = {MacFadyen, A.~I. and Milosavljević, M.},
      title = {An Eccentric Circumbinary Accretion Disk and the Detection of Binary Massive Black Holes},
      journal = {Astrophysical Journal},
      year = {2008},
      volume = {672},
      pages = {83-93},
      doi = {http://dx.doi.org/10.1086/523869}
    }
    
    MacLeod, M., Guillochon, J. & Ramirez-Ruiz, E. The Tidal Disruption of Giant Stars and Their Contribution to the Flaring Supermassive Black Hole Population 2012 The Astrophysical Journal
    Vol. 757(2), pp. 134 
    article  
    BibTeX:
    @article{macleod2012tidal,
      author = {MacLeod, M. and Guillochon, J. and Ramirez-Ruiz, E.},
      title = {The Tidal Disruption of Giant Stars and Their Contribution to the Flaring Supermassive Black Hole Population},
      journal = {The Astrophysical Journal},
      publisher = {IOP Publishing},
      year = {2012},
      volume = {757},
      number = {2},
      pages = {134}
    }
    
    MacLeod, M., Ramirez-Ruiz, E., Grady, S. & Guillochon, J. Spoon-Feeding Giant Stars to Supermassive Black Holes: Episodic Roche Lobe Overflow from Evolving Stars and Their Contribution to the Quiescent Activity of Galactic Nuclei 2013 arXiv preprint arXiv:1307.2900  article  
    BibTeX:
    @article{macleod2013spoon,
      author = {MacLeod, Morgan and Ramirez-Ruiz, Enrico and Grady, Sean and Guillochon, James},
      title = {Spoon-Feeding Giant Stars to Supermassive Black Holes: Episodic Roche Lobe Overflow from Evolving Stars and Their Contribution to the Quiescent Activity of Galactic Nuclei},
      journal = {arXiv preprint arXiv:1307.2900},
      year = {2013}
    }
    
    MacNeice, P., Olson, K.M., Mobarry, C., de Fainchtein, R. & Packer, C. PARAMESH: A parallel adaptive mesh refinement community toolkit 2000 Computer Physics Communications
    Vol. 126, pp. 330-354 
    article DOI  
    BibTeX:
    @article{MacNeice2000,
      author = {MacNeice, P. and Olson, K.~M. and Mobarry, C. and de Fainchtein, R. and Packer, C.},
      title = {PARAMESH: A parallel adaptive mesh refinement community toolkit},
      journal = {Computer Physics Communications},
      year = {2000},
      volume = {126},
      pages = {330-354},
      doi = {http://dx.doi.org/10.1016/S0010-4655(99)00501-9}
    }
    
    Maier, A. & Niemeyer, J.C. C+O detonations in thermonuclear supernovae: interaction with previously burned material 2006 Astronomy and Astrophysics
    Vol. 451(1), pp. 207-212 
    article DOI  
    BibTeX:
    @article{Maier2006,
      author = {Maier, A. and Niemeyer, J.~C.},
      title = {C+O detonations in thermonuclear supernovae: interaction with previously burned material},
      journal = {Astronomy and Astrophysics},
      year = {2006},
      volume = {451},
      number = {1},
      pages = {207-212},
      doi = {http://dx.doi.org/10.1051/0004-6361:20054094}
    }
    
    Malony, A., Shende, S. & Morris, A. Phase-Based Parallel Performance Profiling 2006
    Vol. 33Parallel Computing:
    Current & Future Issues of High-End Computing,, pp. 203-210 
    inproceedings  
    BibTeX:
    @inproceedings{Malony2006,
      author = {Malony, A.D. and Shende, S.S. and Morris, A.},
      title = {Phase-Based Parallel Performance Profiling},
      booktitle = {Parallel Computing:
    Current & Future Issues of High-End Computing,}, year = {2006}, volume = {33}, pages = {203--210}, note = {Proceedings of the International Conference ParCo 2005} }
    Malyshkin, L.M., Linde, T. & Kulsrud, R.M. Magnetic reconnection with anomalous resistivity in two-and-a-half dimensions. I. Quasistationary case 2005 Physics of Plasmas
    Vol. 12, pp. 2902-+ 
    article  
    BibTeX:
    @article{Malyshkin2005,
      author = {Malyshkin, L.~M. and Linde, T. and Kulsrud, R.~M.},
      title = {Magnetic reconnection with anomalous resistivity in two-and-a-half dimensions. I. Quasistationary case},
      journal = {Physics of Plasmas},
      year = {2005},
      volume = {12},
      pages = {2902-+}
    }
    
    Marcello, D. & Tohline, J. A Numerical Method for Studying Super-Eddington Mass Transfer in Double White Dwarf Binaries 2012 The Astrophysical Journal Supplement Series
    Vol. 199(2), pp. 35 
    article  
    BibTeX:
    @article{marcello2012numerical,
      author = {Marcello, D.C. and Tohline, J.E.},
      title = {A Numerical Method for Studying Super-Eddington Mass Transfer in Double White Dwarf Binaries},
      journal = {The Astrophysical Journal Supplement Series},
      publisher = {IOP Publishing},
      year = {2012},
      volume = {199},
      number = {2},
      pages = {35}
    }
    
    Mauche, C., Liedahl, D., Akiyama, S. & Plewa, T. Hydrodynamic and Spectral Simulations of HMXB Winds 2008 The Extreme Universe of the Suzaku Era  inproceedings  
    BibTeX:
    @inproceedings{Mauche2008,
      author = {Mauche, C.W. and Liedahl, D.A. and Akiyama, S. and Plewa, T.},
      title = {Hydrodynamic and Spectral Simulations of HMXB Winds},
      booktitle = {The Extreme Universe of the Suzaku Era},
      year = {2008},
      note = {arXiv: 0704.0237}
    }
    
    Mauche, C., Liedahl, D., Akiyama, S. & Plewa, T. The Physics of Wind-Fed Accretion 2008
    Vol. 1054Cool Discs, Hot Flows: The Varying Faces of Accreting Compact Objects(AIP Conference Proceedings Volume 1054), pp. 3-12 
    conference  
    Abstract: We provide a brief review of the physical processes behind the radiative driving of the winds
    of OB stars and the Bondi-Hoyle-Lyttleton capture and accretion of a fraction of the stellar wind
    by a compact object, typically a neutron star, in detached high-mass X-ray binaries (HMXBs). In
    addition, we describe a program to develop global models of the radiatively-driven photoionized
    winds and accretion ?ows of HMXBs, with particular attention to the prototypical system Vela
    X-1. The models combine XSTAR photoionization calculations, HULLAC emission models appro-
    priate to X-ray photoionized plasmas, improved models of the radiative driving of photoionized
    winds, FLASH time-dependent adaptive-mesh hydrodynamics calculations, and Monte Carlo radi-
    ation transport. We present two- and three-dimensional maps of the density, temperature, velocity,
    ionization parameter, and emissivity distributions of representative X-ray emission lines, as well
    as synthetic global Monte Carlo X-ray spectra. Such models help to better constrain the properties
    of the winds of HMXBs, which bear on such fundamental questions as the long-term evolution of
    these binaries and the chemical enrichment of the interstellar medium.
    BibTeX:
    @conference{Mauche2008a,
      author = {Mauche, C.W. and Liedahl, D.A. and Akiyama, S. and Plewa, T.},
      title = {The Physics of Wind-Fed Accretion},
      booktitle = {Cool Discs, Hot Flows: The Varying Faces of Accreting Compact Objects(AIP Conference Proceedings Volume 1054)},
      year = {2008},
      volume = {1054},
      pages = {3--12}
    }
    
    Mauche, C.W., Liedahl, D.A., Akiyama, S. & Plewa, T. Hydrodynamic, Atomic Kinetic, and Monte Carlo Radiation Transfer Models of the X-ray Spectra of Compact Binaries 2008   techreport DOI URL 
    Abstract: We describe the results of an effort, funded by the Lawrence Livermore National Laboratory Directed Research and Development Program, to model, using FLASH time-dependent adaptive-mesh hydrodynamic simulations, XSTAR photoionization calculations, HULLAC atomic data, and Monte Carlo radiation transport, the radiatively-driven photoionized wind and accretion flow of high-mass X-ray binaries (HMXBs). In this final report, we describe the purpose, approach, and technical accomplishments of this effort, including maps of the density, temperature, velocity, ionization parameter, and emissivity distributions of the X-ray emission lines of the well-studied HMXB Vela X-1.
    BibTeX:
    @techreport{Mauche2008b,
      author = {Mauche, C. W. and Liedahl, D. A. and Akiyama, S. and Plewa, T.},
      title = {Hydrodynamic, Atomic Kinetic, and Monte Carlo Radiation Transfer Models of the X-ray Spectra of Compact Binaries},
      year = {2008},
      url = {http://www.osti.gov/bridge/product.biblio.jsp?query_id=0&page=0&osti_id=926026},
      doi = {http://dx.doi.org/10.2172/926026}
    }
    
    Mayer, L. & Gawryszczak, A. Protoplanetary disk fragmentation with varying radiative physics, initial conditions and numerical techniques 2007 Proceedings of "Extreme Solar Systems"
    Vol. 710Extreme Solar Systems 
    inproceedings  
    BibTeX:
    @inproceedings{Mayer2007,
      author = {Mayer, L. and Gawryszczak, A.},
      title = {Protoplanetary disk fragmentation with varying radiative physics, initial conditions and numerical techniques},
      booktitle = {Extreme Solar Systems},
      journal = {Proceedings of "Extreme Solar Systems"},
      year = {2007},
      volume = {710}
    }
    
    McCarthy, I.G., Bower, R.G., Balogh, M.L., Voit, G.M., Pearce, F.R., Theuns, T., Babul, A., Lacey, C.G. & Frenk, C.S. Modelling shock heating in cluster mergers I. Moving beyond the spherical accretion model 2007 Monthly Notices of the Royal Astronomical Society
    Vol. 376(2), pp. 497-522 
    article DOI URL 
    BibTeX:
    @article{McCarthy2007,
      author = {McCarthy, I. G. and Bower, R. G. and Balogh, M. L. and Voit, G. M. and Pearce, F. R. and Theuns, T. and Babul, A. and Lacey, C. G. and Frenk, C. S.},
      title = {Modelling shock heating in cluster mergers I. Moving beyond the spherical accretion model},
      journal = {Monthly Notices of the Royal Astronomical Society},
      year = {2007},
      volume = {376},
      number = {2},
      pages = {497-522},
      url = {http://www.ingentaconnect.com/content/bsc/mnr/2007/00000376/00000002/art00004},
      doi = {http://dx.doi.org/10.1111/j.1365-2966.2007.11465.x}
    }
    
    McCarthy, I.G., Frenk, C.S., Font, A.S., Lacey, C.G., Bower, R.G., Mitchell, N.L., Balogh, M.L. & Theuns, T. Ram pressure stripping the hot gaseous haloes of galaxies in groups and clusters 2008 Monthly Notices of the RAS
    Vol. 383, pp. 593-605 
    article DOI  
    BibTeX:
    @article{McCarthy2008,
      author = {McCarthy, I.~G. and Frenk, C.~S. and Font, A.~S. and Lacey, C.~G. and Bower, R.~G. and Mitchell, N.~L. and Balogh, M.~L. and Theuns, T.},
      title = {Ram pressure stripping the hot gaseous haloes of galaxies in groups and clusters},
      journal = {Monthly Notices of the RAS},
      year = {2008},
      volume = {383},
      pages = {593-605},
      doi = {http://dx.doi.org/10.1111/j.1365-2966.2007.12577.x}
    }
    
    McNally, C., Wadsley, J. & Couchman, H. Self-Gravity and Angular Momentum Transport in Extended Galactic Disks 2009 The Astrophysical Journal Letters
    Vol. 697, pp. L162 
    article  
    BibTeX:
    @article{mcnally2009self,
      author = {McNally, CP and Wadsley, J. and Couchman, HMP},
      title = {Self-Gravity and Angular Momentum Transport in Extended Galactic Disks},
      journal = {The Astrophysical Journal Letters},
      publisher = {IOP Publishing},
      year = {2009},
      volume = {697},
      pages = {L162}
    }
    
    Meakin, C.A., Seitenzahl, I., Townsley, D., Jordan, G.C., Truran, J. & Lamb, D. Study of the detonation phase in the gravitationally confined detonation model of Type~Ia supernovae 2009 The Astrophysical Journal
    Vol. 693, pp. 1188 
    article  
    BibTeX:
    @article{meakin2009study,
      author = {Meakin, C. A. and Seitenzahl, I. and Townsley, D. and Jordan, G. C. and Truran, J. and Lamb, D.},
      title = {Study of the detonation phase in the gravitationally confined detonation model of Type~Ia supernovae},
      journal = {The Astrophysical Journal},
      publisher = {IOP Publishing},
      year = {2009},
      volume = {693},
      pages = {1188}
    }
    
    Meakin, C.A., Seitenzahl, I., Townsley, D., Jordan, G.C., Truran, J. & Lamb, D. STUDY OF THE DETONATION PHASE IN THE GRAVITATIONALLY CONFINED DETONATION MODEL OF TYPE Ia SUPERNOVAE 2009 The Astrophysical Journal
    Vol. 693, pp. 1188-1208 
    article  
    Abstract: We study the gravitationally confined detonation (GCD) model of Type Ia supernovae (SNe Ia) through the detonation phase and into homologous expansion. In the GCD model, a detonation is triggered by the surface flow due to single-point, off-center flame ignition in carbon-oxygen white dwarfs (WDs). The simulations are unique in terms of the degree to which nonidealized physics is used to treat the reactive flow, including weak reaction rates and a time-dependent treatment of material in nuclear statistical equilibrium (NSE). Careful attention is paid to accurately calculating the final composition of material which is burned to NSE and frozen out in the rapid expansion following the passage of a detonation wave over the high-density core of the WD; and an efficient method for nucleosynthesis postprocessing is developed which obviates the need for costly network calculations along tracer particle thermodynamic trajectories. Observational diagnostics are presented for the explosion models, including abundance stratifications and integrated yields. We find that for all of the ignition conditions studied here a self-regulating process comprised of neutronization and stellar expansion results in final 56Ni masses of ~1.1 Msun. But, more energetic models result in larger total NSE and stable Fe-peak yields. The total yield of intermediate mass elements is ~0.1 Msun and the explosion energies are all around 1.5 ?? 1051 erg. The explosion models are briefly compared to the inferred properties of recent SN Ia observations. The potential for surface detonation models to produce lower-luminosity (lower 56Ni mass) SNe is discussed.
    BibTeX:
    @article{supernovae2009study,
      author = {Meakin, Casey A. and Seitenzahl, Ivo and Townsley, Dean and Jordan, George C. and Truran, James and Lamb, Don},
      title = {STUDY OF THE DETONATION PHASE IN THE GRAVITATIONALLY CONFINED DETONATION MODEL OF TYPE Ia SUPERNOVAE},
      journal = {The Astrophysical Journal},
      year = {2009},
      volume = {693},
      pages = {1188--1208}
    }
    
    Meakin, C.A. & Arnett, D. Anelastic and Compressible Simulations of Stellar Oxygen Burning 2007 The Astrophysical Journal
    Vol. 665, pp. 690-697 
    article DOI  
    BibTeX:
    @article{Meakin2007a,
      author = {Meakin, C.~A. and Arnett, D.},
      title = {Anelastic and Compressible Simulations of Stellar Oxygen Burning},
      journal = {The Astrophysical Journal},
      year = {2007},
      volume = {665},
      pages = {690-697},
      doi = {http://dx.doi.org/10.1086/519372}
    }
    
    Medin, Z.J., Wohlbier, J.G., Fryer, C.L., Rauenzahn, R.M., Fatenejad, M., Lamb, D., Graziani, C., Fryxell, B. & Myra, E. Collaborative Comparison of High-Energy-Density Physics Codes 2013   techreport  
    BibTeX:
    @techreport{medin2013collaborative,
      author = {Medin, Zachary J and Wohlbier, John G and Fryer, Christopher L and Rauenzahn, Rick M and Fatenejad, Milad and Lamb, Don and Graziani, Carlo and Fryxell, Bruce and Myra, Eric},
      title = {Collaborative Comparison of High-Energy-Density Physics Codes},
      year = {2013}
    }
    
    Miceli, M., Orlando, S., Reale, F., Bocchino, F. & Peres, G. Hydrodynamic modelling of ejecta shrapnel in the Vela supernova remnant 2013 Monthly Notices of the Royal Astronomical Society
    Vol. 430(4), pp. 2864-2872 
    article  
    BibTeX:
    @article{miceli2013hydrodynamic,
      author = {Miceli, M. and Orlando, S. and Reale, F. and Bocchino, F. and Peres, G.},
      title = {Hydrodynamic modelling of ejecta shrapnel in the Vela supernova remnant},
      journal = {Monthly Notices of the Royal Astronomical Society},
      publisher = {Oxford University Press},
      year = {2013},
      volume = {430},
      number = {4},
      pages = {2864--2872}
    }
    
    Miceli, M., Bocchino, F., Iakubovskyi, D., Orlando, S., Telezhinsky, I., Kirsch, M.G.F., Petruk, O., Dubner, G. & Castelletti, G. Thermal emission, shock modification, and X-ray emitting ejecta in SN 1006 2009 Astronomy and Astrophysics
    Vol. 501, pp. 239-249 
    article DOI  
    BibTeX:
    @article{2009A&A...501..239M,
      author = {Miceli, M. and Bocchino, F. and Iakubovskyi, D. and Orlando, S. and Telezhinsky, I. and Kirsch, M.~G.~F. and Petruk, O. and Dubner, G. and Castelletti, G.},
      title = {Thermal emission, shock modification, and X-ray emitting ejecta in SN 1006},
      journal = {Astronomy and Astrophysics},
      year = {2009},
      volume = {501},
      pages = {239-249},
      doi = {http://dx.doi.org/10.1051/0004-6361/200811505}
    }
    
    Miceli, M., Reale, F., Orlando, S. & Bocchino, F. Shock-cloud interaction in the Vela SNR. II. Hydrodynamic model 2006 Astronomy and Astrophysics
    Vol. 458, pp. 213-223 
    article DOI  
    BibTeX:
    @article{Miceli2006,
      author = {Miceli, M. and Reale, F. and Orlando, S. and Bocchino, F.},
      title = {Shock-cloud interaction in the Vela SNR. II. Hydrodynamic model},
      journal = {Astronomy and Astrophysics},
      year = {2006},
      volume = {458},
      pages = {213-223},
      doi = {http://dx.doi.org/10.1051/0004-6361:20065738}
    }
    
    Micic, M. Molecular cloud formation with self-consistent thermal and chemical treatment of the gas 2013   article  
    BibTeX:
    @article{micic2013molecular,
      author = {Micic, M.},
      title = {Molecular cloud formation with self-consistent thermal and chemical treatment of the gas},
      year = {2013}
    }
    
    Micic, M., Glover, S.C., Banerjee, R. & Klessen, R.S. Cloud formation in colliding flows: influence of the choice of cooling function 2013 Monthly Notices of the Royal Astronomical Society
    Vol. 432(1), pp. 626-636 
    article  
    BibTeX:
    @article{micic2013cloud,
      author = {Micic, Milica and Glover, Simon CO and Banerjee, Robi and Klessen, Ralf S.},
      title = {Cloud formation in colliding flows: influence of the choice of cooling function},
      journal = {Monthly Notices of the Royal Astronomical Society},
      publisher = {Oxford University Press},
      year = {2013},
      volume = {432},
      number = {1},
      pages = {626--636}
    }
    
    Micic, M., Glover, S.C.O., Federrath, C. & Klessen, R.S. Modelling H$_2$ formation in the turbulent interstellar medium: solenoidal versus compressive turbulent forcing 2012 Monthly Notices of the RAS, pp. 2491  article DOI  
    BibTeX:
    @article{2012MNRAS.tmp.2491M,
      author = {Micic, M. and Glover, S.~C.~O. and Federrath, C. and Klessen, R.~S. },
      title = {Modelling H$_2$ formation in the turbulent interstellar medium: solenoidal versus compressive turbulent forcing},
      journal = {Monthly Notices of the RAS},
      year = {2012},
      pages = {2491},
      doi = {http://dx.doi.org/10.1111/j.1365-2966.2012.20477.x}
    }
    
    Mignone, A., Plewa, T. & Bodo, G. The Piecewise Parabolic Method for Multidimensional Relativistic Fluid Dynamics 2005 Astrophysical Journal, Supplement
    Vol. 160, pp. 199-219 
    article DOI  
    BibTeX:
    @article{Mignone2005,
      author = {Mignone, A. and Plewa, T. and Bodo, G.},
      title = {The Piecewise Parabolic Method for Multidimensional Relativistic Fluid Dynamics},
      journal = {Astrophysical Journal, Supplement},
      year = {2005},
      volume = {160},
      pages = {199-219},
      doi = {http://dx.doi.org/10.1086/430905}
    }
    
    Miguel, L. & Garcia, S. Evaluation of the Expand parallel file system on a novel cluster-wide I/O architecture 2008   article  
    BibTeX:
    @article{miguel2008evaluation,
      author = {Miguel, L. and Garcia, S.},
      title = {Evaluation of the Expand parallel file system on a novel cluster-wide I/O architecture},
      year = {2008}
    }
    
    Milosavljević, M., Couch, S.M. & Bromm, V. Accretion Onto Intermediate-Mass Black Holes in Dense Protogalactic Clouds 2009 The Astrophysical Journal Letters
    Vol. 696(2), pp. L146-L149 
    article DOI URL 
    Abstract: We present the first results from two-dimensional simulations of radiatively efficient accretion of metal-free gas onto intermediate-mass black holes. We fix the shape of the spectral energy distribution of the radiation produced near the event horizon and study the structure of the irradiated low-angular-momentum accretion flow over 3 orders of magnitude in radius from the black hole, 1014-1017cm for a 100 M sun black hole. The luminosity of the central source is made to be proportional to the rate at which gas accretes across the inner boundary, which we set just inside the sonic radius. We find that photoionization heating and radiation pressure modify the structure of the flow. When the ambient gas density is 107cm-3, accretion is intermittent and on average reduced to 32% of the Eddington-limited rate, over 2 orders of magnitude below the "Bondi" rate evaluated ignoring radiation, in agreement with theoretical models. Even if the vicinity of the black hole is supplied with high-density gas, accretion is rendered inefficient through heating and radiation pressure.
    BibTeX:
    @article{Milosavljevic:2009hy,
      author = {Milosavljević, Milov s and Couch, Sean M and Bromm, Volker},
      title = {Accretion Onto Intermediate-Mass Black Holes in Dense Protogalactic Clouds},
      journal = {The Astrophysical Journal Letters},
      year = {2009},
      volume = {696},
      number = {2},
      pages = {L146--L149},
      url = {http://adsabs.harvard.edu/cgi-bin/nph-data_query?bibcode=2009ApJ...696L.146M&link_type=ABSTRACT},
      doi = {http://dx.doi.org/10.1088/0004-637X/696/2/L146}
    }
    
    Milosavljević, M., Koda, J., Nagai, D., Nakar, E. & Shapiro, P.R. The Cluster-Merger Shock in 1E 0657-56: Faster than a Speeding Bullet? 2007 Astrophysical Journal, Letters
    Vol. 661, pp. L131-L134 
    article DOI  
    BibTeX:
    @article{Milosavljevi'c2007,
      author = {Milosavljević, M. and Koda, J. and Nagai, D. and Nakar, E. and Shapiro, P.~R.},
      title = {The Cluster-Merger Shock in 1E 0657-56: Faster than a Speeding Bullet?},
      journal = {Astrophysical Journal, Letters},
      year = {2007},
      volume = {661},
      pages = {L131-L134},
      doi = {http://dx.doi.org/10.1086/518960}
    }
    
    Mitchell, N., McCarthy, I., Bower, R., Theuns, T. & Crain, R. On the origin of cores in simulated galaxy clusters 2009 Monthly Notices of the Royal Astronomical Society
    Vol. 395, pp. 180-196 
    article DOI URL 
    Abstract: The diffuse plasma that fills galaxy groups and clusters (the intracluster medium) is a by-product of galaxy formation. The present thermal state of this gas results from a competition between gas cooling and heating. The heating comes from two distinct sources: gravitational heating associated with the collapse of the dark matter halo and additional thermal input from the formation of galaxies and their black holes. A long-term goal of this research is to decode the observed temperature, density and entropy profiles of clusters and to understand the relative roles of these processes. However, a long-standing problem has been that cosmological simulations based on smoothed particle hydrodynamics (SPH) and Eulerian mesh-based codes predict different results even when cooling and galaxy/black hole heating are switched off. Clusters formed in SPH simulations show near power-law entropy profiles, while those formed in Eulerian simulations develop a core and do not allow gas to reach such low entropies. Since the cooling rate is closely connected to the minimum entropy of the gas distribution, the differences are of potentially key importance.

    In this paper, we investigate the origin of this discrepancy. By comparing simulations run using the GADGET-2 SPH code and the FLASH adaptive Eulerian mesh code, we show that the discrepancy arises during the idealized merger of two clusters and that the differences are not the result of the lower effective resolution of Eulerian cosmological simulations. The difference is not sensitive to the minimum mesh size (in Eulerian codes) or the number of particles used (in SPH codes). We investigate whether the difference is the result of the different gravity solvers, the Galilean non-invariance of the mesh code or an effect of unsuitable artificial viscosity in the SPH code. Instead, we find that the difference is inherent to the treatment of vortices in the two codes. Particles in the SPH simulations retain a close connection to their initial entropy, while this connection is much weaker in the mesh simulations. The origin of this difference lies in the treatment of eddies and fluid instabilities. These are suppressed in the SPH simulations, while the cluster mergers generate strong vortices in the Eulerian simulations that very efficiently mix the fluid and erase the low-entropy gas. We discuss the potentially profound implications of these results.

    BibTeX:
    @article{mitchell2009origin,
      author = {Mitchell, NL and McCarthy, IG and Bower, RG and Theuns, T. and Crain, RA},
      title = {On the origin of cores in simulated galaxy clusters},
      journal = {Monthly Notices of the Royal Astronomical Society},
      year = {2009},
      volume = {395},
      pages = {180--196},
      url = {http://arxiv.org/pdf/0812.1750},
      doi = {http://dx.doi.org/10.1111/j.1365-2966.2009.14550.x}
    }
    
    Mitchell, N.L., Vorobyov, E.I. & Hensler, G. Collisionless stellar hydrodynamics as an efficient alternative to N-body methods 2013 mnras
    Vol. 428, pp. 2674-2687 
    article DOI  
    BibTeX:
    @article{2013MNRAS.428.2674M,
      author = {Mitchell, N.~L. and Vorobyov, E.~I. and Hensler, G.},
      title = {Collisionless stellar hydrodynamics as an efficient alternative to N-body methods},
      journal = {mnras},
      year = {2013},
      volume = {428},
      pages = {2674-2687},
      doi = {http://dx.doi.org/10.1093/mnras/sts228}
    }
    
    Modica, F., Plewa, T. & Zhiglo, A. RAYLEIGH-TAYLOR INSTABILITY WITH SELF-GENERATED MAG-NETIC FIELD AND THERMAL CONDUCTION IN 2D energy
    Vol. 4, pp. 1 
    article  
    BibTeX:
    @article{modica4rayleigh,
      author = {Modica, F. and Plewa, T. and Zhiglo, AV},
      title = {RAYLEIGH-TAYLOR INSTABILITY WITH SELF-GENERATED MAG-NETIC FIELD AND THERMAL CONDUCTION IN 2D},
      journal = {energy},
      volume = {4},
      pages = {1}
    }
    
    Molnar, S., Hearn, N. & Stadel, J. Merging Galaxy Clusters: Offset between the Sunyaev--Zel'dovich Effect and X-Ray Peaks 2012 The Astrophysical Journal
    Vol. 748, pp. 45 
    article  
    BibTeX:
    @article{molnar2012merging,
      author = {Molnar, S.M. and Hearn, N.C. and Stadel, J.G.},
      title = {Merging Galaxy Clusters: Offset between the Sunyaev--Zel'dovich Effect and X-Ray Peaks},
      journal = {The Astrophysical Journal},
      publisher = {IOP Publishing},
      year = {2012},
      volume = {748},
      pages = {45}
    }
    
    Molnar, S.M., Broadhurst, T., Umetsu, K., Zitrin, A., Rephaeli, Y. & Shimon, M. Tangential Velocity of the Dark Matter in the Bullet Cluster from Precise Lensed Image Redshifts 2013 arXiv preprint arXiv:1307.0982  article  
    BibTeX:
    @article{molnar2013tangential,
      author = {Molnar, Sandor M and Broadhurst, Tom and Umetsu, Keiichi and Zitrin, Adi and Rephaeli, Yoel and Shimon, Meir},
      title = {Tangential Velocity of the Dark Matter in the Bullet Cluster from Precise Lensed Image Redshifts},
      journal = {arXiv preprint arXiv:1307.0982},
      year = {2013}
    }
    
    Molnar, S.M., Chiu, I., Tim, N., Broadhurst, T. & Stadel, J.G. The Pre-merger Impact Velocity of the Binary Cluster A1750 from X-ray, Lensing and Hydrodynamical Simulations 2013 arXiv preprint arXiv:1307.6643  article  
    BibTeX:
    @article{molnar2013pre,
      author = {Molnar, Sandor M and Chiu, I and Tim, Non and Broadhurst, Tom and Stadel, Joachim G},
      title = {The Pre-merger Impact Velocity of the Binary Cluster A1750 from X-ray, Lensing and Hydrodynamical Simulations},
      journal = {arXiv preprint arXiv:1307.6643},
      year = {2013}
    }
    
    Moreira, J., Salapura, V., Almasi, G., Archer, C., Bellofatto, R., Bergner, P., Bickford, R., Blumrich, M., Brunheroto, J., Bright, A. & others The Blue Gene/L Supercomputer: A Hardware and Software Story 2007 International Journal of Parallel Programming
    Vol. 35(3), pp. 181-206 
    article  
    BibTeX:
    @article{Moreira2007,
      author = {Moreira, J.E. and Salapura, V. and Almasi, G. and Archer, C. and Bellofatto, R. and Bergner, P. and Bickford, R. and Blumrich, M. and Brunheroto, J.R. and Bright, A.A. and others},
      title = {The Blue Gene/L Supercomputer: A Hardware and Software Story},
      journal = {International Journal of Parallel Programming},
      publisher = {Springer},
      year = {2007},
      volume = {35},
      number = {3},
      pages = {181--206}
    }
    
    Morris, A., Spear, W., Malony, A. & Shende, S. Observing Performance Dynamics Using Parallel Profile Snapshots 2008 Euro-Par 2008 Parallel Processing: 14th International Euro-Par Conference, Las Palmas de Gran Canaria, Spain, August 26-29, 2008, Proceedings, pp. 162  conference  
    BibTeX:
    @conference{AlanMorris2008,
      author = {Morris, Alan and Spear, W. and Malony, A.D. and Shende, S.},
      title = {Observing Performance Dynamics Using Parallel Profile Snapshots},
      booktitle = {Euro-Par 2008 Parallel Processing: 14th International Euro-Par Conference, Las Palmas de Gran Canaria, Spain, August 26-29, 2008, Proceedings},
      year = {2008},
      pages = {162}
    }
    
    Morris, M., Boley, A., Desch, S. & Athanassiadou, T. Chondrule Formation in Bow Shocks around Eccentric Planetary Embryos 2012 The Astrophysical Journal
    Vol. 752(1), pp. 27 
    article  
    BibTeX:
    @article{morris2012chondrule,
      author = {Morris, M.A. and Boley, A.C. and Desch, S.J. and Athanassiadou, T.},
      title = {Chondrule Formation in Bow Shocks around Eccentric Planetary Embryos},
      journal = {The Astrophysical Journal},
      publisher = {IOP Publishing},
      year = {2012},
      volume = {752},
      number = {1},
      pages = {27}
    }
    
    Morsony, B., Lazzati, D. & Begelman, M. The origin and propagation of variability in the outflows of long-duration gamma-ray bursts 2010 The Astrophysical Journal
    Vol. 723, pp. 267 
    article  
    BibTeX:
    @article{morsony2010origin,
      author = {Morsony, B.J. and Lazzati, D. and Begelman, M.C.},
      title = {The origin and propagation of variability in the outflows of long-duration gamma-ray bursts},
      journal = {The Astrophysical Journal},
      publisher = {IOP Publishing},
      year = {2010},
      volume = {723},
      pages = {267}
    }
    
    Morsony, B.J., Miller, J.J., Heinz, S., Freeland, E., Wilcots, E., Brüggen, M. & Ruszkowski, M. Simulations of bent-double radio sources in galaxy groups 2013 Monthly Notices of the Royal Astronomical Society
    Vol. 431(1), pp. 781-792 
    article  
    BibTeX:
    @article{morsony2013simulations,
      author = {Morsony, Brian J and Miller, Jacob J and Heinz, Sebastian and Freeland, Emily and Wilcots, Eric and Brüggen, Marcus and Ruszkowski, Mateusz},
      title = {Simulations of bent-double radio sources in galaxy groups},
      journal = {Monthly Notices of the Royal Astronomical Society},
      publisher = {Oxford University Press},
      year = {2013},
      volume = {431},
      number = {1},
      pages = {781--792}
    }
    
    Morsony, B.J., Heinz, S., Brüggen, M. & Ruszkowski, M. Swimming against the current: simulations of central AGN evolution in dynamic galaxy clusters 2010 Monthly Notices of the RAS
    Vol. 407, pp. 1277-1289 
    article DOI  
    BibTeX:
    @article{2010MNRAS.407.1277M,
      author = {Morsony, B.~J. and Heinz, S. and Brüggen, M. and Ruszkowski, M. },
      title = {Swimming against the current: simulations of central AGN evolution in dynamic galaxy clusters},
      journal = {Monthly Notices of the RAS},
      year = {2010},
      volume = {407},
      pages = {1277-1289},
      doi = {http://dx.doi.org/10.1111/j.1365-2966.2010.17059.x}
    }
    
    Morsony, B.J., Lazzati, D. & Begelman, M.C. Temporal and Angular Properties of Gamma-Ray Burst Jets Emerging from Massive Stars 2007 Astrophysical Journal
    Vol. 665, pp. 569-598 
    article DOI  
    BibTeX:
    @article{Morsony2007,
      author = {Morsony, B.~J. and Lazzati, D. and Begelman, M.~C.},
      title = {Temporal and Angular Properties of Gamma-Ray Burst Jets Emerging from Massive Stars},
      journal = {Astrophysical Journal},
      year = {2007},
      volume = {665},
      pages = {569-598},
      doi = {http://dx.doi.org/10.1086/519483}
    }
    
    Morsony, B.J., Lazzati, D. & Begelman, M.C. Temporal and Angular Properties of GRB Jets Emerging from Massive Stars 2006
    Vol. 209American Astronomical Society Meeting Abstracts, pp. 212.03-+ 
    misc  
    BibTeX:
    @misc{Morsony2006,
      author = {Morsony, B.~J. and Lazzati, D. and Begelman, M.~C.},
      title = {Temporal and Angular Properties of GRB Jets Emerging from Massive Stars},
      booktitle = {American Astronomical Society Meeting Abstracts},
      year = {2006},
      volume = {209},
      pages = {212.03-+}
    }
    
    Muelder, C., Sigovan, C., Ma, K., Cope, J., Lang, S., Iskra, K., Beckman, P. & Ross, R. Visual Analysis of I/O System Behavior for High--End Computing 2011 Proceedings of the third international workshop on Large-scale system and application performance (LSAP'11), pp. 19-26  inproceedings  
    BibTeX:
    @inproceedings{muelder2011visual,
      author = {Muelder, C. and Sigovan, C. and Ma, K.L. and Cope, J. and Lang, S. and Iskra, K. and Beckman, P. and Ross, R.},
      title = {Visual Analysis of I/O System Behavior for High--End Computing},
      booktitle = {Proceedings of the third international workshop on Large-scale system and application performance (LSAP'11)},
      year = {2011},
      pages = {19--26}
    }
    
    Murawski, K. Numerical solutions of magnetohydrodynamic equations 2011 Bulletin of the Polish Academy of Sciences
    Vol. 59(1) 
    article  
    BibTeX:
    @article{m11,
      author = {K. Murawski},
      title = {Numerical solutions of magnetohydrodynamic equations},
      journal = {Bulletin of the Polish Academy of Sciences},
      year = {2011},
      volume = {59},
      number = {1}
    }
    
    Murawski, K. & Lee, D. Godunov-type algorithms for numerical modeling of solar plasma 2012 Control and Cybernetics
    Vol. 41(1) 
    article  
    BibTeX:
    @article{murawski2012godunov,
      author = {Murawski, K. and Lee, D.},
      title = {Godunov-type algorithms for numerical modeling of solar plasma},
      journal = {Control and Cybernetics},
      year = {2012},
      volume = {41},
      number = {1}
    }
    
    Murawski, K. & Lee, D. Godunov-type Algorithms for Numerical Modeling of Solar Corona 2012 Accepted, Bulletin of the Polish Academy of Sciences Technical Sciences  article  
    BibTeX:
    @article{MurawskiLee_NumMethod1_2012,
      author = {Murawski, K. and D. Lee},
      title = {Godunov-type Algorithms for Numerical Modeling of Solar Corona},
      journal = {Accepted, Bulletin of the Polish Academy of Sciences Technical Sciences},
      year = {2012}
    }
    
    Murawski, K. & Lee, D. Numerical methods of solving equations of hydrodynamics from perspectives of the code FLASH 2011 Bulletin of the Polish Academy of Sciences
    Vol. 59(81) 
    article  
    BibTeX:
    @article{ml11,
      author = {K. Murawski and D. Lee},
      title = {Numerical methods of solving equations of hydrodynamics from perspectives of the code FLASH},
      journal = {Bulletin of the Polish Academy of Sciences},
      year = {2011},
      volume = {59},
      number = {81}
    }
    
    Murawski, K. & Selwa, M. A numerical model of MHD waves 2004 Annales UMCS Informatica
    Vol. {AI 2}, pp. 283-290 
    article  
    BibTeX:
    @article{Murawski2004,
      author = {Murawski, K. and Selwa, M.},
      title = {A numerical model of MHD waves},
      journal = {Annales UMCS Informatica},
      year = {2004},
      volume = {AI 2},
      pages = {283--290}
    }
    
    Murawski, K., Srivastava, A., McLaughlin, J. & Oliver, R. Numerical simulations of Magnetoacoustic-Gravity Waves in the Solar Atmosphere 2012 arXiv preprint arXiv:1208.5837  article  
    BibTeX:
    @article{murawski2012numerical,
      author = {Murawski, K. and Srivastava, AK and McLaughlin, JA and Oliver, R.},
      title = {Numerical simulations of Magnetoacoustic-Gravity Waves in the Solar Atmosphere},
      journal = {arXiv preprint arXiv:1208.5837},
      year = {2012}
    }
    
    Murawski, K., Srivastava, A.K. & Zaqarashvili, T. Numerical simulations of solar macrospicules 2011 Astronomy and Astrophysics
    Vol. 535(A58) 
    article  
    BibTeX:
    @article{m11a,
      author = {K. Murawski and Abishek. K. Srivastava and T.V. Zaqarashvili},
      title = {Numerical simulations of solar macrospicules},
      journal = {Astronomy and Astrophysics},
      publisher = {K. Srivastava},
      year = {2011},
      volume = {535},
      number = {A58}
    }
    
    Murawski, K. & Zaqarashvili, T.V. Numerical simulations of spicule formation in the solar atmosphere 2010 Astronomy and Astrophysics
    Vol. 519(A8) 
    article  
    BibTeX:
    @article{mz10,
      author = {K. Murawski and T. V. Zaqarashvili},
      title = {Numerical simulations of spicule formation in the solar atmosphere},
      journal = {Astronomy and Astrophysics},
      year = {2010},
      volume = {519},
      number = {A8}
    }
    
    Murawski, K., Zaqarashvili, T.V. & Nakariakov, V.M. Entropy mode at a magnetic null point as a possible tool for indirect observation of nanoflares in the solar corona, Astron 2011 Astronomy and Astrophysics
    Vol. 533(A18) 
    article  
    BibTeX:
    @article{mzn11,
      author = {K. Murawski and T. V. Zaqarashvili and V. M. Nakariakov},
      title = {Entropy mode at a magnetic null point as a possible tool for indirect observation of nanoflares in the solar corona, Astron},
      journal = {Astronomy and Astrophysics},
      year = {2011},
      volume = {533},
      number = {A18}
    }
    
    Naiman, J., Ramirez-Ruiz, E. & Lin, D. Stellar Wind Mass Retention in Star Clusters: Implications for Subsequent Episodes of Star Formation 2012 arXiv preprint arXiv:1206.5002  article  
    BibTeX:
    @article{naiman2012stellar,
      author = {Naiman, JP and Ramirez-Ruiz, E. and Lin, DNC},
      title = {Stellar Wind Mass Retention in Star Clusters: Implications for Subsequent Episodes of Star Formation},
      journal = {arXiv preprint arXiv:1206.5002},
      year = {2012}
    }
    
    Naiman, J.P., Ramirez-Ruiz, E. & Lin, D.N.C. Gas Accretion by Star Clusters and the Formation of Ultraluminous X-Ray Sources from Cusps of Compact Remnants 2009 The Astrophysical Journal Letters
    Vol. 705, pp. L153-L157 
    article DOI  
    BibTeX:
    @article{Naiman2009,
      author = {Naiman, J.~P. and Ramirez-Ruiz, E. and Lin, D.~N.~C.},
      title = {Gas Accretion by Star Clusters and the Formation of Ultraluminous X-Ray Sources from Cusps of Compact Remnants},
      journal = {The Astrophysical Journal Letters},
      year = {2009},
      volume = {705},
      pages = {L153-L157},
      doi = {http://dx.doi.org/10.1088/0004-637X/705/2/L153}
    }
    
    Nakamura, F., McKee, C.F., Klein, R.I. & Fisher, R.T. On the Hydrodynamic Interaction of Shock Waves with Interstellar Clouds. II. The Effect of Smooth Cloud Boundaries on Cloud Destruction and Cloud Turbulence 2006 Astrophysical Journal, Supplement
    Vol. 164, pp. 477-505 
    article DOI  
    BibTeX:
    @article{Nakamura2006,
      author = {Nakamura, F. and McKee, C.~F. and Klein, R.~I. and Fisher, R.~T.},
      title = {On the Hydrodynamic Interaction of Shock Waves with Interstellar Clouds. II. The Effect of Smooth Cloud Boundaries on Cloud Destruction and Cloud Turbulence},
      journal = {Astrophysical Journal, Supplement},
      year = {2006},
      volume = {164},
      pages = {477-505},
      doi = {http://dx.doi.org/10.1086/501530}
    }
    
    Nataraj, A., Malony, A., Morris, A., Arnold, D. & Miller, B. In Search of Sweet-Spots in Parallel Performance Monitoring 2008 2008 IEEE International Conference on Cluster Computing, pp. 69-78  conference  
    BibTeX:
    @conference{Nataraj2008,
      author = {Nataraj, A. and Malony, A.D. and Morris, A. and Arnold, D.C. and Miller, B.P.},
      title = {In Search of Sweet-Spots in Parallel Performance Monitoring},
      booktitle = {2008 IEEE International Conference on Cluster Computing},
      year = {2008},
      pages = {69--78}
    }
    
    Nataraj, A., Malony, A.D., Arnold, D.C. & Miller, B.P. A framework for scalable, parallel performance monitoring 2009 Concurrency and Computation: Practice and Experience
    Vol. 22(6), pp. 720-735 
    article DOI URL 
    Abstract: Performance monitoring of HPC applications offers opportunities for adaptive optimization based on the dynamic performance behavior, unavailable in purely post-mortem performance views. However, a parallel performance monitoring system must have low overhead and high efficiency to make these opportunities tangible. We describe a scalable parallel performance monitor called TAUoverMRNet (ToM), created from the integration of the TAU performance system and the Multicast Reduction Network (MRNet). The integration is achieved through a plug-in architecture in TAU that allows the selection of different transport substrates to offload the online performance data. A method to establish the transport overlay structure of the monitor from within TAU, one that requires no added support from the job manager or application, is presented. We demonstrate the distribution of performance analysis from the sink to the overlay nodes and the reduction in the large-scale profile data that could, otherwise, overwhelm any single sink. The results show low perturbation and significant savings accrued from reduction at large processor-counts.
    BibTeX:
    @article{Nataraj2009,
      author = {Aroon Nataraj and Allen D. Malony and Dorian C. Arnold and Barton P. Miller},
      title = {A framework for scalable, parallel performance monitoring},
      journal = {Concurrency and Computation: Practice and Experience},
      year = {2009},
      volume = {22},
      number = {6},
      pages = {720-735},
      url = {http://dx.doi.org/10.1002/cpe.1544},
      doi = {http://dx.doi.org/10.1002/cpe.1544}
    }
    
    Negara, S., Zheng, G., Pan, K., Negara, N., Johnson, R., Kalé, L. & Ricker, P. Automatic MPI to AMPI program transformation using photran 2011 Euro-Par 2010 Parallel Processing Workshops, pp. 531-539  inproceedings  
    BibTeX:
    @inproceedings{negara2011automatic,
      author = {Negara, S. and Zheng, G. and Pan, K.C. and Negara, N. and Johnson, R. and Kalé, L. and Ricker, P.},
      title = {Automatic MPI to AMPI program transformation using photran},
      booktitle = {Euro-Par 2010 Parallel Processing Workshops},
      year = {2011},
      pages = {531--539}
    }
    
    Nisar, A., Liao, W. & Choudhary, A. Delegation-Based I/O Mechanism for High Performance Computing Systems 2012 Parallel and Distributed Systems, IEEE Transactions on
    Vol. 23(2), pp. 271-279 
    article  
    BibTeX:
    @article{nisar2012delegation,
      author = {Nisar, A. and Liao, W.K. and Choudhary, A.},
      title = {Delegation-Based I/O Mechanism for High Performance Computing Systems},
      journal = {Parallel and Distributed Systems, IEEE Transactions on},
      publisher = {IEEE},
      year = {2012},
      volume = {23},
      number = {2},
      pages = {271--279}
    }
    
    Nisar, A., Liao, W.-k. & Choudhary, A. Scaling parallel I/O performance through I/O delegate and caching system 2008 SC '08: Proceedings of the 2008 ACM/IEEE conference on Supercomputing, pp. 1-12  inproceedings  
    BibTeX:
    @inproceedings{Nisar2008,
      author = {Nisar, Arifa and Liao, Wei-keng and Choudhary, Alok},
      title = {Scaling parallel I/O performance through I/O delegate and caching system},
      booktitle = {SC '08: Proceedings of the 2008 ACM/IEEE conference on Supercomputing},
      publisher = {IEEE Press},
      year = {2008},
      pages = {1--12}
    }
    
    Norman, M. Adaptive Mesh Refinement, Theory and Applications: Proceedings Of The Chicago Workshop On Adaptive Mesh Refinement Methods, Sept. 3-5, 2003 2005 , pp. 413-430  inbook  
    BibTeX:
    @inbook{Norman2005,
      author = {Norman, M.L.},
      title = {Adaptive Mesh Refinement, Theory and Applications: Proceedings Of The Chicago Workshop On Adaptive Mesh Refinement Methods, Sept. 3-5, 2003},
      publisher = {Springer},
      year = {2005},
      pages = {413--430}
    }
    
    Ogrodowczyk, R. & Murawski, K. Numerical simulations of impulsively excited magnetosonic waves in two parallel solar coronal slabs 2007 Astronomy and Astrophysics
    Vol. 461(1133) 
    article  
    BibTeX:
    @article{om07,
      author = {R. Ogrodowczyk and K. Murawski},
      title = {Numerical simulations of impulsively excited magnetosonic waves in two parallel solar coronal slabs},
      journal = {Astronomy and Astrophysics},
      year = {2007},
      volume = {461},
      number = {1133}
    }
    
    Ogrodowczyk, R. & Murawski, K. Numerical simulations of slow magnetosonic standing waves in a straight solar coronal slab 2007 Astronomy and Astrophysics
    Vol. 467(311) 
    article  
    BibTeX:
    @article{om07a,
      author = {R. Ogrodowczyk and K. Murawski},
      title = {Numerical simulations of slow magnetosonic standing waves in a straight solar coronal slab},
      journal = {Astronomy and Astrophysics},
      year = {2007},
      volume = {467},
      number = {311}
    }
    
    Ogrodowczyk, R. & Murawski, K. Numerical simulations of impulsively generated magnetosonic waves in a coronal loop 2006 Solar Phys
    Vol. 236(273) 
    article  
    BibTeX:
    @article{om06,
      author = {R. Ogrodowczyk and K. Murawski},
      title = {Numerical simulations of impulsively generated magnetosonic waves in a coronal loop},
      journal = {Solar Phys},
      year = {2006},
      volume = {236},
      number = {273}
    }
    
    Ogrodowczyk, R. & Murawski, K. Parallel Computing in a Network of Workstations 2004 TASK Quarterly
    Vol. 8(3), pp. 327-332 
    article  
    BibTeX:
    @article{Ogrodowczyk2004,
      author = {Ogrodowczyk, Rafal and Murawski, Krzysztof},
      title = {Parallel Computing in a Network of Workstations},
      journal = {TASK Quarterly},
      year = {2004},
      volume = {8},
      number = {3},
      pages = {327-332}
    }
    
    Ogrodowczyk, R., Murawski, K., Bielecki, B., Informatyki, K., w Chełmie, P., Fizyki, I. & w Lublinie, U. Systemy rozproszone 2005 IV Konferencja Entuzjastów Informatyki  inproceedings  
    BibTeX:
    @inproceedings{Ogrodowczyk2005,
      author = {Ogrodowczyk, R. and Murawski, K. and Bielecki, B. and Informatyki, K. and w Chełmie, P.W.S.Z. and Fizyki, I. and w Lublinie, U.M.C.S.},
      title = {Systemy rozproszone},
      booktitle = {IV Konferencja Entuzjastów Informatyki},
      year = {2005}
    }
    
    Ogrodowczyk, R., Murawski, K. & Selwa, M. Massively parallel numerical simulations of magnetosonic waves in a solar coronal magnetic slab 2006
    Vol. 1Proceedings of XI-th Conference of mathematics and Computer sciences, Chelm 2005, Poland, pp. 91-98 
    inproceedings  
    BibTeX:
    @inproceedings{oms06,
      author = {R. Ogrodowczyk and K. Murawski and M. Selwa},
      title = {Massively parallel numerical simulations of magnetosonic waves in a solar coronal magnetic slab},
      booktitle = {Proceedings of XI-th Conference of mathematics and Computer sciences, Chelm 2005, Poland},
      year = {2006},
      volume = {1},
      pages = {91-98}
    }
    
    Ogrodowczyk, R., Murawski, K. & Selwa, M. Massively Parallel numerical simulations of magnetosonic waves in a solar coronal magnetic slab 2006 Scientific Bulletin of Chelm, section of Mathematics and Computer Science
    Vol. 1, pp. 85-92 
    article  
    BibTeX:
    @article{Ogrodowczyk2006,
      author = {Ogrodowczyk, R. and Murawski, K. and Selwa, M.},
      title = {Massively Parallel numerical simulations of magnetosonic waves in a solar coronal magnetic slab},
      journal = {Scientific Bulletin of Chelm, section of Mathematics and Computer Science},
      year = {2006},
      volume = {1},
      pages = {85--92}
    }
    
    Ogrodowczyk, R., Murawski, K. & Solanki, S.K. Slow magnetoacoustic standing waves in a curved solar coronal slab 2009 Astronomy and Astrophysics
    Vol. 495(313) 
    article  
    BibTeX:
    @article{oms09,
      author = {R. Ogrodowczyk and K. Murawski and S. K. Solanki},
      title = {Slow magnetoacoustic standing waves in a curved solar coronal slab},
      journal = {Astronomy and Astrophysics},
      year = {2009},
      volume = {495},
      number = {313}
    }
    
    Olson, K. & MacNeice, P. Adaptive Mesh Refinement - Theory and Applications 2005 , pp. 315-330  inbook  
    BibTeX:
    @inbook{Olson2005,
      author = {Olson, K.M. and MacNeice, P.},
      title = {Adaptive Mesh Refinement - Theory and Applications},
      publisher = {Springer},
      year = {2005},
      pages = {315--330}
    }
    
    Omang, M., Børve, S. & Trulsen, J. Alternative kernel functions for Smoothed Particle Hydrodynamics in cylindrical symmetry 2005 Shock Waves
    Vol. 14, pp. 293-298 
    article DOI  
    BibTeX:
    @article{Omang2005,
      author = {Omang, M. and Børve, S. and Trulsen, J.},
      title = {Alternative kernel functions for Smoothed Particle Hydrodynamics in cylindrical symmetry},
      journal = {Shock Waves},
      year = {2005},
      volume = {14},
      pages = {293-298},
      doi = {http://dx.doi.org/10.1007/s00193-005-0274-5}
    }
    
    Ono, M., Nagataki, S., Ito, H., Lee, S.-H., Mao, J., Hashimoto, M.-a. & Tolstov, A. Matter Mixing in Aspherical Core-collapse Supernovae: A Search for Possible Conditions for Conveying $^56$Ni into High Velocity Regions 2013 apj
    Vol. 773, pp. 161 
    article DOI  
    BibTeX:
    @article{2013ApJ...773..161O,
      author = {Ono, M. and Nagataki, S. and Ito, H. and Lee, S.-H. and Mao, J. and Hashimoto, M.-a. and Tolstov, A.},
      title = {Matter Mixing in Aspherical Core-collapse Supernovae: A Search for Possible Conditions for Conveying $^56$Ni into High Velocity Regions},
      journal = {apj},
      year = {2013},
      volume = {773},
      pages = {161},
      doi = {http://dx.doi.org/10.1088/0004-637X/773/2/161}
    }
    
    Orban, C., Fatenejad, M., Chawla, S., Wilks, S.C. & Lamb, D.Q. A Radiation-Hydrodynamics Code Comparison for Laser-Produced Plasmas: FLASH versus HYDRA and the Results of Validation Experiments 2013 ArXiv e-prints  article URL 
    BibTeX:
    @article{2013arXiv1306.1584O,
      author = {Orban, C. and Fatenejad, M. and Chawla, S. and Wilks, S.~C. and Lamb, D.~Q.},
      title = {A Radiation-Hydrodynamics Code Comparison for Laser-Produced Plasmas: FLASH versus HYDRA and the Results of Validation Experiments},
      journal = {ArXiv e-prints},
      year = {2013},
      url = {http://arxiv.org/abs/1306.1584}
    }
    
    Orlando, S., Drake, J.J. & Laming, J. 3D Modeling of the 2006 Nova Outburst of RS Ophiuchi: Collimated Outflows and Jet-Like Ejections 2009 Protostellar Jets in Context  inproceedings DOI  
    BibTeX:
    @inproceedings{Orlando2009a,
      author = {Orlando, S. and Drake, J. J. and Laming, JM},
      title = {3D Modeling of the 2006 Nova Outburst of RS Ophiuchi: Collimated Outflows and Jet-Like Ejections},
      booktitle = {Protostellar Jets in Context},
      publisher = {Springer Berlin Heidelberg},
      year = {2009},
      doi = {http://dx.doi.org/10.1007/978-3-642-00576-3_45}
    }
    
    Orlando, S., Peres, G. & Reale, F. 3-Dimensional Hydrodynamic Interaction of a Supernova Remnant Shock with an Isolated Cloud 2005 CAMP '05: Proceedings of the Seventh International Workshop on Computer Architecture for Machine Perception (CAMP'05), pp. 135-140  inproceedings DOI  
    BibTeX:
    @inproceedings{Orlando2005,
      author = {Salvatore Orlando and Giovanni Peres and Fabio Reale},
      title = {3-Dimensional Hydrodynamic Interaction of a Supernova Remnant Shock with an Isolated Cloud},
      booktitle = {CAMP '05: Proceedings of the Seventh International Workshop on Computer Architecture for Machine Perception (CAMP'05)},
      publisher = {IEEE Computer Society},
      year = {2005},
      pages = {135--140},
      doi = {http://dx.doi.org/10.1109/CAMP.2005.55}
    }
    
    Orlando, S., Bocchino, F., Miceli, M., Petruk, O. & Pumo, M.L. Role of ejecta clumping and back-reaction of accelerated cosmic rays in the evolution of Type Ia supernova remnants 2012 The Astrophysical Journal
    Vol. 749 Number 2, pp. 156 
    article DOI  
    BibTeX:
    @article{2012arXiv1202.3593O,
      author = {Orlando, S. and Bocchino, F. and Miceli, M. and Petruk, O. and Pumo, M.~L.},
      title = {Role of ejecta clumping and back-reaction of accelerated cosmic rays in the evolution of Type Ia supernova remnants},
      journal = {The Astrophysical Journal},
      year = {2012},
      volume = {749 Number 2},
      pages = {156},
      doi = {http://dx.doi.org/10.1088/0004-637X/749/2/156}
    }
    
    Orlando, S., Bocchino, F., Miceli, M., Reale, F. & Peres, G. Modeling SNR shock waves expanding through the magnetized inhomogeneous interstellar medium 2009 Nuovo Cimento C Geophysics Space Physics C
    Vol. 32(2), pp. 020000-48 
    article DOI  
    BibTeX:
    @article{2009NCimC..32b..45O,
      author = {Orlando, S. and Bocchino, F. and Miceli, M. and Reale, F. and Peres, G.},
      title = {Modeling SNR shock waves expanding through the magnetized inhomogeneous interstellar medium},
      journal = {Nuovo Cimento C Geophysics Space Physics C},
      year = {2009},
      volume = {32},
      number = {2},
      pages = {020000-48},
      doi = {http://dx.doi.org/10.1393/ncc/i2009-10367-x}
    }
    
    Orlando, S., Bocchino, F., Miceli, M., Reale, F. & Peres, G. MHD modeling of supernova remnants expanding through inhomogeneous interstellar medium . 2009 Memorie della Societa Astronomica Italiana Supplement
    Vol. 13, pp. 97-+ 
    article  
    BibTeX:
    @article{Orlando2009b,
      author = {Orlando, S. and Bocchino, F. and Miceli, M. and Reale, F. and Peres, G.},
      title = {MHD modeling of supernova remnants expanding through inhomogeneous interstellar medium .},
      journal = {Memorie della Societa Astronomica Italiana Supplement},
      year = {2009},
      volume = {13},
      pages = {97-+}
    }
    
    Orlando, S., Bocchino, F., Miceli, M., Zhou, X., Reale, F. & Peres, G. Observability and diagnostics in the X-ray band of shock-cloud interactions in supernova remnants 2010 Astronomy and Astrophysics
    Vol. 514, pp. A29 
    article DOI  
    BibTeX:
    @article{2010A&A...514A..29O,
      author = {Orlando, S. and Bocchino, F. and Miceli, M. and Zhou, X. and Reale, F. and Peres, G.},
      title = {Observability and diagnostics in the X-ray band of shock-cloud interactions in supernova remnants},
      journal = {Astronomy and Astrophysics},
      year = {2010},
      volume = {514},
      pages = {A29},
      doi = {http://dx.doi.org/10.1051/0004-6361/200913801}
    }
    
    Orlando, S., Bocchino, F., Peres, G., Reale, F., Plewa, T. & Rosner, R. Crushing of interstellar gas clouds in supernova remnants. II. X-ray emission 2006 Astronomy and Astrophysics
    Vol. 457, pp. 545-552 
    article DOI  
    BibTeX:
    @article{Orlando2006,
      author = {Orlando, S. and Bocchino, F. and Peres, G. and Reale, F. and Plewa, T. and Rosner, R.},
      title = {Crushing of interstellar gas clouds in supernova remnants. II. X-ray emission},
      journal = {Astronomy and Astrophysics},
      year = {2006},
      volume = {457},
      pages = {545-552},
      doi = {http://dx.doi.org/10.1051/0004-6361:20065652}
    }
    
    Orlando, S., Bocchino, F., Reale, F., Peres, G. & Pagano, P. The Importance of Magnetic-Field-Oriented Thermal Conduction in the Interaction of SNR Shocks with Interstellar Clouds 2008 Astrophysical Journal
    Vol. 678, pp. 274-286 
    article DOI  
    BibTeX:
    @article{Orlando2008a,
      author = {Orlando, S. and Bocchino, F. and Reale, F. and Peres, G. and Pagano, P.},
      title = {The Importance of Magnetic-Field-Oriented Thermal Conduction in the Interaction of SNR Shocks with Interstellar Clouds},
      journal = {Astrophysical Journal},
      year = {2008},
      volume = {678},
      pages = {274-286},
      doi = {http://dx.doi.org/10.1086/529420}
    }
    
    Orlando, S., Bocchino, F., Reale, F., Peres, G. & Petruk, O. On the Origin of Asymmetries in Bilateral Supernova Remnants 2007 Astronomy and Astrophysics
    Vol. 470(470), pp. 927-939 
    article  
    BibTeX:
    @article{Orlando2007,
      author = {Orlando, S. and Bocchino, F. and Reale, F. and Peres, G. and Petruk, O.},
      title = {On the Origin of Asymmetries in Bilateral Supernova Remnants},
      journal = {Astronomy and Astrophysics},
      year = {2007},
      volume = {470},
      number = {470},
      pages = {927--939}
    }
    
    Orlando, S. & Drake, J.J. Modelling the 2010 blast wave of the symbiotic-like nova V407 Cygni 2012 Monthly Notices of the RAS
    Vol. 419, pp. 2329-2337 
    article DOI  
    BibTeX:
    @article{2012MNRAS.419.2329O,
      author = {Orlando, S. and Drake, J.~J.},
      title = {Modelling the 2010 blast wave of the symbiotic-like nova V407 Cygni},
      journal = {Monthly Notices of the RAS},
      year = {2012},
      volume = {419},
      pages = {2329-2337},
      doi = {http://dx.doi.org/10.1111/j.1365-2966.2011.19880.x}
    }
    
    Orlando, S., Drake, J.J. & Laming, J.M. Three-dimensional modeling of the asymmetric blast wave from the 2006 outburst of RS Ophiuchi: Early X-ray emission 2009 Astronomy and Astrophysics
    Vol. 493, pp. 1049-1059 
    article DOI  
    BibTeX:
    @article{Orlando2009,
      author = {Orlando, S. and Drake, J.~J. and Laming, J.~M.},
      title = {Three-dimensional modeling of the asymmetric blast wave from the 2006 outburst of RS Ophiuchi: Early X-ray emission},
      journal = {Astronomy and Astrophysics},
      year = {2009},
      volume = {493},
      pages = {1049-1059},
      note = {paper accepted for publication in A&A},
      doi = {http://dx.doi.org/10.1051/0004-6361:200810109}
    }
    
    Orlando, S. & Favata, F. Observations and Models of X-ray Emission from Jets of Infant Stars 2008
    Vol. 742Lecture Notes in Physics, Berlin Springer Verlag, pp. 173-+ 
    inproceedings  
    BibTeX:
    @inproceedings{Orlando2008,
      author = {Orlando, S. and Favata, F.},
      title = {Observations and Models of X-ray Emission from Jets of Infant Stars},
      booktitle = {Lecture Notes in Physics, Berlin Springer Verlag},
      year = {2008},
      volume = {742},
      pages = {173-+}
    }
    
    Orlando, S., Peres, G., Reale, F., Bocchino, F., Plewa, T. & Rosner, R. Hydrodynamic interaction of SNR shocks with thermally conducting, radiative clouds. 2006 Memorie della Societa Astronomica Italiana Supplement
    Vol. 9, pp. 208-+ 
    article  
    BibTeX:
    @article{Orlando2006a,
      author = {Orlando, S. and Peres, G. and Reale, F. and Bocchino, F. and Plewa, T. and Rosner, R.},
      title = {Hydrodynamic interaction of SNR shocks with thermally conducting, radiative clouds.},
      journal = {Memorie della Societa Astronomica Italiana Supplement},
      year = {2006},
      volume = {9},
      pages = {208-+}
    }
    
    Orlando, S., Peres, G., Reale, F., Bocchino, F., Rosner, R., Plewa, T. & Siegel, A. Crushing of interstellar gas clouds in supernova remnants. I. The role of thermal conduction and radiative losses 2005 Astronomy and Astrophysics
    Vol. 444, pp. 505-519 
    article DOI  
    BibTeX:
    @article{Orlando2005a,
      author = {Orlando, S. and Peres, G. and Reale, F. and Bocchino, F. and Rosner, R. and Plewa, T. and Siegel, A.},
      title = {Crushing of interstellar gas clouds in supernova remnants. I. The role of thermal conduction and radiative losses},
      journal = {Astronomy and Astrophysics},
      year = {2005},
      volume = {444},
      pages = {505-519},
      doi = {http://dx.doi.org/10.1051/0004-6361:20052896}
    }
    
    Orlando, S., Peres, G., Reale, F., Plewa, T., Rosner, R. & Siegel, A. Using AMR to Simulate the 3-D Hydrodynamic Interaction of Supernova Shocks with Interstellar Gas Clouds 2004 Memorie della Societa Astronomica Italiana Supplement
    Vol. 4, pp. 82-+ 
    article  
    BibTeX:
    @article{Orlando2004,
      author = {Orlando, S. and Peres, G. and Reale, F. and Plewa, T. and Rosner, R. and Siegel, A.},
      title = {Using AMR to Simulate the 3-D Hydrodynamic Interaction of Supernova Shocks with Interstellar Gas Clouds},
      journal = {Memorie della Societa Astronomica Italiana Supplement},
      year = {2004},
      volume = {4},
      pages = {82-+}
    }
    
    Orlando, S., Peres, G., Reale, F. & Rosner, R. Non-equilibrium ionization effects during flares in coronal loops 2002 ESA SP-505: SOLMAG 2002. Proceedings of the Magnetic Coupling of the Solar Atmosphere Euroconference, pp. 517-520  inproceedings  
    BibTeX:
    @inproceedings{Orlando2002,
      author = {Orlando, S. and Peres, G. and Reale, F. and Rosner, R.},
      title = {Non-equilibrium ionization effects during flares in coronal loops},
      booktitle = {ESA SP-505: SOLMAG 2002. Proceedings of the Magnetic Coupling of the Solar Atmosphere Euroconference},
      year = {2002},
      pages = {517-520}
    }
    
    Orlando, S., Peres, G., Reale, F., Rosner, R., Plewa, T. & Siegel, A. Development and Application of Numerical Modules for FLASH in Palermo: Two Astrophysical Examples 2003 Memorie della Societa Astronomica Italiana Supplement
    Vol. 1, pp. 45-+ 
    article  
    BibTeX:
    @article{Orlando2003,
      author = {Orlando, S. and Peres, G. and Reale, F. and Rosner, R. and Plewa, T. and Siegel, A.},
      title = {Development and Application of Numerical Modules for FLASH in Palermo: Two Astrophysical Examples},
      journal = {Memorie della Societa Astronomica Italiana Supplement},
      year = {2003},
      volume = {1},
      pages = {45-+}
    }
    
    Orlando, S., Peres, G., Reale, F., Rosner, R. & Siegel, A. Non-Equilibrium Ionization Effects Induced During Coronal Flares 2003 Memorie della Societa Astronomica Italiana
    Vol. 74, pp. 643-+ 
    article  
    BibTeX:
    @article{Orlando2003a,
      author = {Orlando, S. and Peres, G. and Reale, F. and Rosner, R. and Siegel, A.},
      title = {Non-Equilibrium Ionization Effects Induced During Coronal Flares},
      journal = {Memorie della Societa Astronomica Italiana},
      year = {2003},
      volume = {74},
      pages = {643-+}
    }
    
    Orlando, S., Petruk, O., Bocchino, F. & Miceli, M. Effects of non-uniform interstellar magnetic field on synchrotron X-ray and inverse-Compton $-ray morphology of supernova remnants 2011 Astronomy and Astrophysics
    Vol. 526, pp. A129 
    article DOI  
    BibTeX:
    @article{2011A&A...526A.129O,
      author = {Orlando, S. and Petruk, O. and Bocchino, F. and Miceli, M. },
      title = {Effects of non-uniform interstellar magnetic field on synchrotron X-ray and inverse-Compton $-ray morphology of supernova remnants},
      journal = {Astronomy and Astrophysics},
      year = {2011},
      volume = {526},
      pages = {A129},
      doi = {http://dx.doi.org/10.1051/0004-6361/201015505}
    }
    
    Orlov, S.S. & Abarzhi, S.I. New Experimental Platform for Studies of Turbulence and Turbulent Mixing in Accelerating and Rotating Fluids at High Reynolds Numbers 2007 Astrophysics and Space Science, pp. 6-+  article DOI  
    BibTeX:
    @article{Orlov2007,
      author = {Orlov, S.~S. and Abarzhi, S.~I.},
      title = {New Experimental Platform for Studies of Turbulence and Turbulent Mixing in Accelerating and Rotating Fluids at High Reynolds Numbers},
      journal = {Astrophysics and Space Science},
      year = {2007},
      pages = {6-+},
      doi = {http://dx.doi.org/10.1007/s10509-006-9289-3}
    }
    
    Pagano, P., Raymond, J.C., Reale, F. & Orlando, S. Modeling magnetohydrodynamics and non-equilibrium SoHO/UVCS line emission of CME shocks 2008 Astronomy and Astrophysics
    Vol. 481, pp. 835-844 
    article DOI  
    BibTeX:
    @article{Pagano2008,
      author = {Pagano, P. and Raymond, J.~C. and Reale, F. and Orlando, S.},
      title = {Modeling magnetohydrodynamics and non-equilibrium SoHO/UVCS line emission of CME shocks},
      journal = {Astronomy and Astrophysics},
      year = {2008},
      volume = {481},
      pages = {835-844},
      doi = {http://dx.doi.org/10.1051/0004-6361:20079088}
    }
    
    Pagano, P., Reale, F., Orlando, S. & Peres, G. MHD evolution of a fragment of a CME core in the outer solar corona 2007 Astronomy and Astrophysics
    Vol. 464, pp. 753-760 
    article DOI  
    BibTeX:
    @article{Pagano2007,
      author = {Pagano, P. and Reale, F. and Orlando, S. and Peres, G.},
      title = {MHD evolution of a fragment of a CME core in the outer solar corona},
      journal = {Astronomy and Astrophysics},
      year = {2007},
      volume = {464},
      pages = {753-760},
      doi = {http://dx.doi.org/10.1051/0004-6361:20065866}
    }
    
    Pagano, P., Reale, F., Orlando, S. & Peres, G. MHD-Modeling of the Propagation of a Coronal Mass Ejection 2005 ESA SP-600: The Dynamic Sun: Challenges for Theory and Observations  inproceedings  
    BibTeX:
    @inproceedings{Pagano2005,
      author = {Pagano, P. and Reale, F. and Orlando, S. and Peres, G. },
      title = {MHD-Modeling of the Propagation of a Coronal Mass Ejection},
      booktitle = {ESA SP-600: The Dynamic Sun: Challenges for Theory and Observations},
      year = {2005}
    }
    
    Palouš, J., Wünsch, R., Martinez-González, S., Hueyotl-Zahuantitla, F., Silich, S. & Tenorio-Tagle, G. Young Stellar Clusters with a Schuster Mass Distribution. I. Stationary Winds 2013 The Astrophysical Journal
    Vol. 772(2), pp. 128 
    article DOI URL 
    Abstract: Hydrodynamic models for spherically symmetric winds driven by young stellar clusters with a generalized Schuster stellar density profile are explored. For this we use both semi-analytic models and one-dimensional numerical simulations. We determine the properties of quasi-adiabatic and radiative stationary winds and define the radius at which the flow turns from subsonic to supersonic for all stellar density distributions. Strongly radiative winds significantly diminish their terminal speed and thus their mechanical luminosity is strongly reduced. This also reduces their potential negative feedback into their host galaxy interstellar medium. The critical luminosity above which radiative cooling becomes dominant within the clusters, leading to thermal instabilities which make the winds non-stationary, is determined, and its dependence on the star cluster density profile, core radius, and half-mass radius is discussed.
    BibTeX:
    @article{palous2013young,
      author = {Palouš, Jan and Wünsch, Richard and Martinez-González, Sergio and Hueyotl-Zahuantitla, Filiberto and Silich, Sergiy and Tenorio-Tagle, Guillermo},
      title = {Young Stellar Clusters with a Schuster Mass Distribution. I. Stationary Winds},
      journal = {The Astrophysical Journal},
      year = {2013},
      volume = {772},
      number = {2},
      pages = {128},
      url = {http://stacks.iop.org/0004-637X/772/i=2/a=128},
      doi = {http://dx.doi.org/10.1088/0004-637X/772/2/128}
    }
    
    Pan, K., Ricker, P. & Taam, R. Evolution of Post-impact Companion Stars in SN Ia Remnants within the Single-degenerate Scenario 2012 The Astrophysical Journal
    Vol. 760(1), pp. 21 
    article  
    BibTeX:
    @article{pan2012evolution,
      author = {Pan, K.C. and Ricker, P.M. and Taam, R.E.},
      title = {Evolution of Post-impact Companion Stars in SN Ia Remnants within the Single-degenerate Scenario},
      journal = {The Astrophysical Journal},
      publisher = {IOP Publishing},
      year = {2012},
      volume = {760},
      number = {1},
      pages = {21}
    }
    
    Pan, K., Ricker, P. & Taam, R. Impact of type ia supernova ejecta on binary companions in the single-degenerate scenario 2012 The Astrophysical Journal
    Vol. 750(2), pp. 151 
    article  
    BibTeX:
    @article{pan2012impact,
      author = {Pan, K.C. and Ricker, P.M. and Taam, R.E.},
      title = {Impact of type ia supernova ejecta on binary companions in the single-degenerate scenario},
      journal = {The Astrophysical Journal},
      publisher = {IOP Publishing},
      year = {2012},
      volume = {750},
      number = {2},
      pages = {151}
    }
    
    Pan, K.-C., Ricker, P. & Taam, R. Evolution Of Post-Impact Remnant Helium Stars In Type Ia Supernova Remnants Within The Single-Degenerate Scenario 2013 arXiv preprint arXiv:1303.1228  article  
    BibTeX:
    @article{pan2013evolution,
      author = {Pan, Kuo-Chuan and Ricker, Paul and Taam, Ronald},
      title = {Evolution Of Post-Impact Remnant Helium Stars In Type Ia Supernova Remnants Within The Single-Degenerate Scenario},
      journal = {arXiv preprint arXiv:1303.1228},
      year = {2013}
    }
    
    Pan, L., Desch, S., Scannapieco, E. & Timmes, F. Mixing of Clumpy Supernova Ejecta into Molecular Clouds 2012 The Astrophysical Journal
    Vol. 756(1), pp. 102 
    article  
    BibTeX:
    @article{pan2012mixing,
      author = {Pan, L. and Desch, S.J. and Scannapieco, E. and Timmes, FX},
      title = {Mixing of Clumpy Supernova Ejecta into Molecular Clouds},
      journal = {The Astrophysical Journal},
      publisher = {IOP Publishing},
      year = {2012},
      volume = {756},
      number = {1},
      pages = {102}
    }
    
    Pan, L. & Scannapieco, E. Passive scalar structures in supersonic turbulence 2011 Physical Review E
    Vol. 83(4), pp. 045302 
    article  
    BibTeX:
    @article{pan2011passive,
      author = {Pan, L. and Scannapieco, E.},
      title = {Passive scalar structures in supersonic turbulence},
      journal = {Physical Review E},
      publisher = {APS},
      year = {2011},
      volume = {83},
      number = {4},
      pages = {045302}
    }
    
    Pan, L. & Scannapieco, E. Mixing in Supersonic Turbulence 2010 The Astrophysical Journal
    Vol. 721, pp. 1765 
    article  
    BibTeX:
    @article{pan2010mixing,
      author = {Pan, L. and Scannapieco, E.},
      title = {Mixing in Supersonic Turbulence},
      journal = {The Astrophysical Journal},
      publisher = {IOP Publishing},
      year = {2010},
      volume = {721},
      pages = {1765}
    }
    
    Pan, L., Scannapieco, E. & Scalo, J. Modeling the Pollution of Pristine Gas in the Early Universe 2013 arXiv preprint arXiv:1306.4663  article  
    BibTeX:
    @article{pan2013modeling,
      author = {Pan, Liubin and Scannapieco, Evan and Scalo, John},
      title = {Modeling the Pollution of Pristine Gas in the Early Universe},
      journal = {arXiv preprint arXiv:1306.4663},
      year = {2013}
    }
    
    Pan, L., Scannapieco, E. & Scalo, J. The pollution of pristine material in compressible turbulence 2012 Journal of Fluid Mechanics
    Vol. 700(1), pp. 459-489 
    article  
    BibTeX:
    @article{pan2012pollution,
      author = {Pan, L. and Scannapieco, E. and Scalo, J.},
      title = {The pollution of pristine material in compressible turbulence},
      journal = {Journal of Fluid Mechanics},
      publisher = {Cambridge Univ Press},
      year = {2012},
      volume = {700},
      number = {1},
      pages = {459--489}
    }
    
    Pan, K.-C.., Ricker, P.M. & Taam, R.E. Impact of Type Ia Supernova Ejecta on a Helium-star Binary Companion 2010 The Astrophysical Journal
    Vol. 715, pp. 78-85 
    article DOI  
    BibTeX:
    @article{pan_impact_2010,
      author = {Pan, K.-C. and Ricker, P. M. and Taam, R. E.},
      title = {Impact of Type Ia Supernova Ejecta on a Helium-star Binary Companion},
      journal = {The Astrophysical Journal},
      year = {2010},
      volume = {715},
      pages = {78--85},
      doi = {http://dx.doi.org/10.1088/0004-637X/715/1/78}
    }
    
    Papish, O. & Soker, N. Exploding Core-Collapse Supernovae by Jets-Driven Feedback Mechanism 2013 arXiv preprint arXiv:1307.0418  article  
    BibTeX:
    @article{papish2013exploding,
      author = {Papish, Oded and Soker, Noam},
      title = {Exploding Core-Collapse Supernovae by Jets-Driven Feedback Mechanism},
      journal = {arXiv preprint arXiv:1307.0418},
      year = {2013}
    }
    
    Papish, O. & Soker, N. Exploding SNe with jets: time-scales 2012 arXiv preprint arXiv:1204.2560  article  
    BibTeX:
    @article{papish2012exploding,
      author = {Papish, O. and Soker, N.},
      title = {Exploding SNe with jets: time-scales},
      journal = {arXiv preprint arXiv:1204.2560},
      year = {2012}
    }
    
    Parashar, M., Li, X. & Chandra, S. Advanced Computational Infrastructures for Parallel and Distributed Applications 2009   book  
    BibTeX:
    @book{Parashar2009,
      author = {Parashar, M. and Li, X. and Chandra, S.},
      title = {Advanced Computational Infrastructures for Parallel and Distributed Applications},
      publisher = {Wiley-Interscience},
      year = {2009}
    }
    
    Parete-Koon, S.T., Smith, C.R., Papatheodore, T.L. & Messer, O.B. A review of direct numerical simulations of astrophysical detonations and their implications 2013 Frontiers of Physics
    Vol. 8(2), pp. 189-198 
    article  
    BibTeX:
    @article{parete2013review,
      author = {Parete-Koon, Suzanne T and Smith, Christopher R and Papatheodore, Thomas L and Messer, OE Bronson},
      title = {A review of direct numerical simulations of astrophysical detonations and their implications},
      journal = {Frontiers of Physics},
      publisher = {Springer},
      year = {2013},
      volume = {8},
      number = {2},
      pages = {189--198}
    }
    
    Parkin, E. Adaptive image ray-tracing for astrophysical simulations 2011 Monthly Notices of the Royal Astronomical Society: Letters
    Vol. 410(1), pp. L28-L31 
    article  
    BibTeX:
    @article{parkin2011adaptive,
      author = {Parkin, ER},
      title = {Adaptive image ray-tracing for astrophysical simulations},
      journal = {Monthly Notices of the Royal Astronomical Society: Letters},
      publisher = {Wiley Online Library},
      year = {2011},
      volume = {410},
      number = {1},
      pages = {L28--L31}
    }
    
    Parkin, E. & Gosset, E. Investigating the X-ray emission from the massive WR+ O binary WR 22 using 3D hydrodynamical models 2011 Astronomy & Astrophysics
    Vol. 530 
    article  
    BibTeX:
    @article{parkin2011investigating,
      author = {Parkin, ER and Gosset, E.},
      title = {Investigating the X-ray emission from the massive WR+ O binary WR 22 using 3D hydrodynamical models},
      journal = {Astronomy & Astrophysics},
      publisher = {EDP Sciences},
      year = {2011},
      volume = {530}
    }
    
    Parkin, E. & Pittard, J. Numerical heat conduction in hydrodynamical models of colliding hypersonic flows 2010 Monthly Notices of the Royal Astronomical Society
    Vol. 406(4), pp. 2373-2385 
    article  
    BibTeX:
    @article{parkin2010numerical,
      author = {Parkin, ER and Pittard, JM},
      title = {Numerical heat conduction in hydrodynamical models of colliding hypersonic flows},
      journal = {Monthly Notices of the Royal Astronomical Society},
      publisher = {Wiley Online Library},
      year = {2010},
      volume = {406},
      number = {4},
      pages = {2373--2385}
    }
    
    Parkin, E., Pittard, J., Corcoran, M. & Hamaguchi, K. Spiralling out of control: 3D hydrodynamical modelling of the colliding winds in $$ eta$ thinspace $ Carinae 2010 Arxiv preprint arXiv:1011.0778  article  
    BibTeX:
    @article{parkin2010spiralling,
      author = {Parkin, ER and Pittard, JM and Corcoran, MF and Hamaguchi, K.},
      title = {Spiralling out of control: 3D hydrodynamical modelling of the colliding winds in $$ eta$ thinspace $ Carinae},
      journal = {Arxiv preprint arXiv:1011.0778},
      year = {2010}
    }
    
    Parkin, E., Pittard, J., Corcoran, M., Hamaguchi, K., Stevens, I., Gosset, E., Rauw, G. & De Becker, M. 3D modelling of the massive star binary systems Eta Carinae, WR 22, and WR 140 2011 Bulletin de la Societe Royale des Sciences de Liege
    Vol. 80 
    article  
    BibTeX:
    @article{parkin20113d,
      author = {Parkin, ER and Pittard, JM and Corcoran, MF and Hamaguchi, K. and Stevens, IR and Gosset, E. and Rauw, G. and De Becker, M.},
      title = {3D modelling of the massive star binary systems Eta Carinae, WR 22, and WR 140},
      journal = {Bulletin de la Societe Royale des Sciences de Liege},
      year = {2011},
      volume = {80}
    }
    
    Parkin, E.R., Pittard, J.M., Corcoran, M.F. & Hamaguchi, K. Spiraling Out of Control: Three-dimensional Hydrodynamical Modeling of the Colliding Winds in $ eta $ Carinae 2011 The Astrophysical Journal
    Vol. 726, pp. 105 
    article DOI  
    BibTeX:
    @article{parkin2011spiraling,
      author = {Parkin, E. R. and Pittard, J. M. and Corcoran, M. F. and Hamaguchi, K.},
      title = {Spiraling Out of Control: Three-dimensional Hydrodynamical Modeling of the Colliding Winds in $ eta $ Carinae},
      journal = {The Astrophysical Journal},
      publisher = {IOP Publishing},
      year = {2011},
      volume = {726},
      pages = {105},
      doi = {http://dx.doi.org/10.1088/0004-637X/726/2/105}
    }
    
    Pavlovski, G., Kaiser, C. & Pope, E. Dynamics of buoyant bubbles in clusters of galaxies 2007 Monthly Notices of the RAS
    Vol. accepted 
    article  
    BibTeX:
    @article{Pavlovski2007,
      author = {Pavlovski, G. and Kaiser, C.R. and Pope, E.C.D.},
      title = {Dynamics of buoyant bubbles in clusters of galaxies},
      journal = {Monthly Notices of the RAS},
      year = {2007},
      volume = {accepted},
      note = {arXiv:0709.1796v1}
    }
    
    Pavlovski, G., Kaiser, C.R., Pope, E.C.D. & Fangohr, H. Morphology of flows and buoyant bubbles in the Virgo cluster 2008 Monthly Notices of the RAS
    Vol. 384, pp. 1377-1386 
    article DOI  
    BibTeX:
    @article{Pavlovski2008,
      author = {Pavlovski, G. and Kaiser, C.~R. and Pope, E.~C.~D. and Fangohr, H.},
      title = {Morphology of flows and buoyant bubbles in the Virgo cluster},
      journal = {Monthly Notices of the RAS},
      year = {2008},
      volume = {384},
      pages = {1377-1386},
      doi = {http://dx.doi.org/10.1111/j.1365-2966.2007.12622.x}
    }
    
    Pawlik, A., Milosavljevic, M. & Bromm, V. The First Galaxies: Assembly under Radiative Feedback from the First Stars 2012 arXiv preprint arXiv:1208.3698  article  
    BibTeX:
    @article{pawlik2012first,
      author = {Pawlik, A.H. and Milosavljevic, M. and Bromm, V.},
      title = {The First Galaxies: Assembly under Radiative Feedback from the First Stars},
      journal = {arXiv preprint arXiv:1208.3698},
      year = {2012}
    }
    
    Peng, F., Brown, E.F. & Truran, J.W. Type I X-Ray Bursts at Low Accretion Rates 2007 Proceedings of the Conference on The Multicoloured Landscape of Compact Objects and their Explosive Origins, Cefalu, Italy, AIP Conference Proceedings  inproceedings  
    BibTeX:
    @inproceedings{Peng2007,
      author = {Peng, F. and Brown, E. F. and Truran, J. W.},
      title = {Type I X-Ray Bursts at Low Accretion Rates},
      booktitle = {Proceedings of the Conference on The Multicoloured Landscape of Compact Objects and their Explosive Origins, Cefalu, Italy, AIP Conference Proceedings},
      year = {2007}
    }
    
    Peng, F., Brown, E.F. & Truran, J.W. Sedimentation and Type I X-Ray Bursts at Low Accretion Rates 2007 Astrophysical Journal
    Vol. 654, pp. 1022 
    article  
    BibTeX:
    @article{Peng2007a,
      author = {Peng, F. and Brown, E. F. and Truran, J. W.},
      title = {Sedimentation and Type I X-Ray Bursts at Low Accretion Rates},
      journal = {Astrophysical Journal},
      year = {2007},
      volume = {654},
      pages = {1022}
    }
    
    Peplinski, A., Artymowicz, P. & Mellema, G. Numerical simulations of type III planetary migration - I. Disc model and convergence tests 2008 Monthly Notices of the RAS
    Vol. 386, pp. 164-178 
    article DOI  
    BibTeX:
    @article{Peplinski2008,
      author = {Peplinski, A. and Artymowicz, P. and Mellema, G.},
      title = {Numerical simulations of type III planetary migration - I. Disc model and convergence tests},
      journal = {Monthly Notices of the RAS},
      year = {2008},
      volume = {386},
      pages = {164-178},
      doi = {http://dx.doi.org/10.1111/j.1365-2966.2008.13045.x}
    }
    
    Peplinski, A., Artymowicz, P. & Mellema, G. Numerical simulations of the type III migration: I. Disc model and convergence tests 2007 Monthly Notices of the RAS
    Vol. submitted 
    article  
    BibTeX:
    @article{Peplinski2007a,
      author = {Peplinski, A. and Artymowicz, P. and Mellema, G.},
      title = {Numerical simulations of the type III migration: I. Disc model and convergence tests},
      journal = {Monthly Notices of the RAS},
      year = {2007},
      volume = {submitted}
    }
    
    Peres, G., Bonito, R., Orlando, S. & Reale, F. Numerical Simulations and Diagnostics in Astrophysics: A few Magnetohydrodynamics Examples 2008 Modelling and Simulation in Science: Proceedings of the 6th International Workshop on Data Analysis in Astronomy held from 15-22 April, 2007, in Eriche, Italy., pp. 66  inproceedings  
    BibTeX:
    @inproceedings{Peres2008,
      author = {Peres, G. and Bonito, R. and Orlando, S. and Reale, F.},
      title = {Numerical Simulations and Diagnostics in Astrophysics: A few Magnetohydrodynamics Examples},
      booktitle = {Modelling and Simulation in Science: Proceedings of the 6th International Workshop on Data Analysis in Astronomy held from 15-22 April, 2007, in Eriche, Italy.},
      publisher = {World Scientific, New Jersey, USA},
      year = {2008},
      pages = {66}
    }
    
    Peres, G., Orlando, S., Reale, F., Rosner, R., Plewa, T. & Siegel, A. Crushing of Interstellar Gas Clouds in Supernova Remnants: the Role of Thermal Conduction and Radiative Losses 2004 AIP Conf. Proc. 703: Plasmas in the Laboratory and in the Universe: New Insights and New Challenges, pp. 326-329  inproceedings DOI  
    Abstract: We model hydrodynamic interactions of an old supernova remnant shock wave with a small interstellar gas cloud, taking into account the effects of thermal conduction and radiative losses. In particular, we consider a representative case of a Mach 30 shock impacting on an isolated cloud with density contrast ? = 10 with respect to the ambient medium. Thermal conduction appears to be effective in suppressing the Kelvin-Helmholtz and Rayleigh-Taylor instabilities which would develop at the cloud boundaries. We demonstrate that the radiative losses play a crucial role in the dynamics of the shock-cloud interaction, dominating evolution of the shocked cloud medium.
    BibTeX:
    @inproceedings{Peres2004,
      author = {Peres, G. and Orlando, S. and Reale, F. and Rosner, R. and Plewa, T. and Siegel, A.},
      title = {Crushing of Interstellar Gas Clouds in Supernova Remnants: the Role of Thermal Conduction and Radiative Losses},
      booktitle = {AIP Conf. Proc. 703: Plasmas in the Laboratory and in the Universe: New Insights and New Challenges},
      year = {2004},
      pages = {326-329},
      doi = {http://dx.doi.org/10.1063/1.1718476}
    }
    
    Peters, T., Banerjee, R. & Klessen, R.S. Ionization front-driven turbulence in the clumpy interstellar medium 2008 Physica Scripta
    Vol. T132, pp. 014026 (6pp) 
    article DOI URL 
    Abstract: We present 3D radiation-gas dynamical simulations of an ionization front running into a dense clump. In our setup, a B0 star irradiates an overdensity which is at a distance of 10 pc and modelled as a supercritical 100M_\odot Bonnor-Ebert sphere. The radiation from the star heats up the gas and creates a shock front that expands into the interstellar medium. The shock compresses the clump material, while the ionizing radiation heats it up. The outcome of this 'cloud-crushing' process is a fully turbulent gas in the wake of the clump. In the end, the clump entirely dissolves. We propose that this mechanism is very efficient in creating short-living supersonic turbulence in the vicinity of massive stars.
    BibTeX:
    @article{Peters2008,
      author = {T Peters and R Banerjee and R S Klessen},
      title = {Ionization front-driven turbulence in the clumpy interstellar medium},
      journal = {Physica Scripta},
      year = {2008},
      volume = {T132},
      pages = {014026 (6pp)},
      url = {http://stacks.iop.org/1402-4896/T132/014026},
      doi = {http://dx.doi.org/10.1088/0031-8949/2008/T132/014026}
    }
    
    Peters, T., Banerjee, R., Klessen, R.S. & Mac Low, M.-M. The Interplay of Magnetic Fields, Fragmentation, and Ionization Feedback in High-mass Star Formation 2011 The Astrophysical Journal
    Vol. 729, pp. 72 
    article DOI  
    BibTeX:
    @article{2011ApJ...729...72P,
      author = {Peters, T. and Banerjee, R. and Klessen, R.~S. and Mac Low, M.-M. },
      title = {The Interplay of Magnetic Fields, Fragmentation, and Ionization Feedback in High-mass Star Formation},
      journal = {The Astrophysical Journal},
      year = {2011},
      volume = {729},
      pages = {72},
      doi = {http://dx.doi.org/10.1088/0004-637X/729/1/72}
    }
    
    Peters, T., Banerjee, R., Klessen, R.S., Mac Low, M.-M., Galván-Madrid, R. & Keto, E.R. H II Regions: Witnesses to Massive Star Formation 2010 The Astrophysical Journal
    Vol. 711, pp. 1017-1028 
    article DOI  
    BibTeX:
    @article{2010ApJ...711.1017P,
      author = {Peters, T. and Banerjee, R. and Klessen, R. S. and Mac Low, M.-M. and Galván-Madrid, R. and Keto, E. R.},
      title = {H II Regions: Witnesses to Massive Star Formation},
      journal = {The Astrophysical Journal},
      year = {2010},
      volume = {711},
      pages = {1017-1028},
      doi = {http://dx.doi.org/10.1088/0004-637X/711/2/1017}
    }
    
    Peters, T., Klaassen, P.D., Mac Low, M.-M., Klessen, R.S. & Banerjee, R. Are molecular outflows around high-mass stars driven by ionization feedback? 2012 apj
    Vol. 760, pp. 91 
    article DOI URL 
    BibTeX:
    @article{peters2012molecular,
      author = {Peters, T. and Klaassen, Pamela D. and Mac Low, Mordecai-Mark and Klessen, R. S. and Banerjee, R.},
      title = {Are molecular outflows around high-mass stars driven by ionization feedback?},
      journal = {apj},
      year = {2012},
      volume = {760},
      pages = {91},
      url = {http://arxiv.org/abs/1209.5858},
      doi = {http://dx.doi.org/10.1088/0004-637X/760/1/91}
    }
    
    Peters, T., Klessen, R.S., Mac Low, M.-M. & Banerjee, R. Limiting Accretion onto Massive Stars by Fragmentation-induced Starvation 2010 The Astrophysical Journal
    Vol. 725, pp. 134-145 
    article DOI  
    BibTeX:
    @article{2010ApJ...725..134P,
      author = {Peters, T. and Klessen, R.~S. and Mac Low, M.-M. and Banerjee, R. },
      title = {Limiting Accretion onto Massive Stars by Fragmentation-induced Starvation},
      journal = {The Astrophysical Journal},
      year = {2010},
      volume = {725},
      pages = {134-145},
      doi = {http://dx.doi.org/10.1088/0004-637X/725/1/134}
    }
    
    Peters, T., Klessen, R.S., Mac Low, M.-M. & Bannrjee, R. Radiative Feedback in Massive Star and Cluster Formation 2011 Stellar Clusters amp Associations: A RIA Workshop on Gaia, pp. 229-234  inproceedings  
    BibTeX:
    @inproceedings{2011sca..conf..229P,
      author = {Peters, T. and Klessen, R.~S. and Mac Low, Mordecai-Mark and Robi Bannrjee},
      title = {Radiative Feedback in Massive Star and Cluster Formation},
      booktitle = {Stellar Clusters amp Associations: A RIA Workshop on Gaia},
      year = {2011},
      pages = {229-234}
    }
    
    Peters, T., Longmore, S.N. & Dullemond, C.P. Understanding hydrogen recombination line observations with ALMA and EVLA 2012 Monthly Notices of the Royal Astronomical Society
    Vol. 425(3), pp. 2352-2368 
    article  
    BibTeX:
    @article{peters2012understanding,
      author = {Peters, T. and Longmore, S. N. and Dullemond, C. P.},
      title = {Understanding hydrogen recombination line observations with ALMA and EVLA},
      journal = {Monthly Notices of the Royal Astronomical Society},
      publisher = {Wiley Online Library},
      year = {2012},
      volume = {425},
      number = {3},
      pages = {2352--2368}
    }
    
    Peters, T., Mac Low, M.-M., Banerjee, R., Klessen, R.S. & Dullemond, C.P. Understanding Spatial and Spectral Morphologies of Ultracompact H II Regions 2010 The Astrophysical Journal
    Vol. 719, pp. 831-843 
    article DOI  
    BibTeX:
    @article{2010ApJ...719..831P,
      author = {Peters, T. and Mac Low, M.-M. and Banerjee, R. and Klessen, R.~S. and Dullemond, C.~P.},
      title = {Understanding Spatial and Spectral Morphologies of Ultracompact H II Regions},
      journal = {The Astrophysical Journal},
      year = {2010},
      volume = {719},
      pages = {831-843},
      doi = {http://dx.doi.org/10.1088/0004-637X/719/1/831}
    }
    
    Peters, T., Mac Low, M.-M., Banerjee, R., Klessen, R.S. & Dullemond, C.P. ERRATUM: ''Understanding Spatial and Spectral Morphologies of Ultracompact H II Regions'' (2010, ApJ, 719, 831) 2010 The Astrophysical Journal
    Vol. 720, pp. 1782 
    article DOI  
    BibTeX:
    @article{2010ApJ...720.1782P,
      author = {Peters, T. and Mac Low, M.-M. and Banerjee, R. and Klessen, R.~S. and Dullemond, C.~P.},
      title = {ERRATUM: ''Understanding Spatial and Spectral Morphologies of Ultracompact H II Regions'' (2010, ApJ, 719, 831)},
      journal = {The Astrophysical Journal},
      year = {2010},
      volume = {720},
      pages = {1782},
      doi = {http://dx.doi.org/10.1088/0004-637X/720/2/1782}
    }
    
    Peters, T., Schleicher, D., Klessen, R., Banerjee, R., Federrath, C., Smith, R. & Sur, S. The impact of thermodynamics on gravitational collapse: filament formation and magnetic field amplification 2012 arXiv preprint arXiv:1209.5861  article  
    BibTeX:
    @article{peters2012impact,
      author = {Peters, T. and Schleicher, D.R.G. and Klessen, R.S. and Banerjee, R. and Federrath, C. and Smith, R.J. and Sur, S.},
      title = {The impact of thermodynamics on gravitational collapse: filament formation and magnetic field amplification},
      journal = {arXiv preprint arXiv:1209.5861},
      year = {2012}
    }
    
    Peters, T., Schleicher, D.R.G., Smith, R.J., Schmidt, W. & Klessen, R.S. Low-metallicity star formation: relative impact of metals and magnetic fields 2014 Monthly Notices of the Royal Astronomical Society
    Vol. 442(4), pp. 3112-3126 
    article DOI URL 
    Abstract: Low-metallicity star formation poses a central problem of cosmology, as it determines the characteristic mass scale and distribution for the first and second generations of stars forming in our Universe. Here, we present a comprehensive investigation assessing the relative impact of metals and magnetic fields, which may both be present during low-metallicity star formation. We show that the presence of magnetic fields generated via the small-scale dynamo stabilizes the protostellar disc and provides some degree of support against fragmentation. In the absence of magnetic fields, the fragmentation time-scale in our model decreases by a factor of ~10 at the transition from Z = 0 to Z > 0, with subsequently only a weak dependence on metallicity. Similarly, the accretion time-scale of the cluster is set by the large-scale dynamics rather than the local thermodynamics. In the presence of magnetic fields, the primordial disc can become completely stable, therefore forming only one central fragment. At Z > 0, the number of fragments is somewhat reduced in the presence of magnetic fields, though the shape of the mass spectrum is not strongly affected in the limits of the statistical uncertainties. The fragmentation time-scale, however, increases by roughly a factor of 3 in the presence of magnetic fields. Indeed, our results indicate comparable fragmentation time-scales in primordial runs without magnetic fields and Z > 0 runs with magnetic fields.
    BibTeX:
    @article{Peters21082014,
      author = {Peters, Thomas and Schleicher, Dominik R. G. and Smith, Rowan J. and Schmidt, Wolfram and Klessen, Ralf S.},
      title = {Low-metallicity star formation: relative impact of metals and magnetic fields},
      journal = {Monthly Notices of the Royal Astronomical Society},
      year = {2014},
      volume = {442},
      number = {4},
      pages = {3112-3126},
      url = {http://mnras.oxfordjournals.org/content/442/4/3112.abstract},
      doi = {http://dx.doi.org/10.1093/mnras/stu1097}
    }
    
    Pfannes, J., Niemeyer, J., Schmidt, W. & Klingenberg, C. Thermonuclear explosions of rapidly rotating white dwarfs-I. Deflagrations 2009 Arxiv preprint arXiv:0911.3540  article  
    BibTeX:
    @article{pfannes2009thermonuclear,
      author = {Pfannes, JMM and Niemeyer, JC and Schmidt, W. and Klingenberg, C.},
      title = {Thermonuclear explosions of rapidly rotating white dwarfs-I. Deflagrations},
      journal = {Arxiv preprint arXiv:0911.3540},
      year = {2009}
    }
    
    Plewa, T. The FLASH code: from design to applications 2003 ASP Conf. Ser. 293: 3D Stellar Evolution, pp. 22-26  inproceedings  
    BibTeX:
    @inproceedings{Plewa2003,
      author = {Plewa, T.},
      title = {The FLASH code: from design to applications},
      booktitle = {ASP Conf. Ser. 293: 3D Stellar Evolution},
      year = {2003},
      pages = {22-26}
    }
    
    Plewa, T. Detonating Failed Deflagration Model of Thermonuclear Supernovae I. Explosion Dynamics 2007 Astrophysical Journal
    Vol. 657, pp. 942-+ 
    article  
    BibTeX:
    @article{Plewa2007,
      author = {Plewa, T.},
      title = {Detonating Failed Deflagration Model of Thermonuclear Supernovae I. Explosion Dynamics},
      journal = {Astrophysical Journal},
      year = {2007},
      volume = {657},
      pages = {942--+}
    }
    
    Plewa, T., Calder, A.C. & Lamb, D.Q. Type Ia Supernova Explosion: Gravitationally Confined Detonation 2004 Astrophysical Journal, Letters
    Vol. 612, pp. L37-L40 
    article DOI  
    BibTeX:
    @article{Plewa2004,
      author = {Plewa, T. and Calder, A.~C. and Lamb, D.~Q.},
      title = {Type Ia Supernova Explosion: Gravitationally Confined Detonation},
      journal = {Astrophysical Journal, Letters},
      year = {2004},
      volume = {612},
      pages = {L37-L40},
      doi = {http://dx.doi.org/10.1086/424036}
    }
    
    Ploeckinger, S. & Hensler, G. Do high-velocity clouds trace the dark matter subhalo population? 2012 A&A  article  
    BibTeX:
    @article{ploeckinger2012high,
      author = {Ploeckinger, S. and Hensler, G.},
      title = {Do high-velocity clouds trace the dark matter subhalo population?},
      journal = {A&A},
      year = {2012}
    }
    
    Poludnenko, A.Y. & Khokhlov, A.M. Computation of fluid flows in non-inertial contracting, expanding, and rotating reference frames 2007 Journal of Computational Physics
    Vol. 220, pp. 678-711 
    article DOI  
    BibTeX:
    @article{Poludnenko2007,
      author = {Poludnenko, A.~Y. and Khokhlov, A.~M.},
      title = {Computation of fluid flows in non-inertial contracting, expanding, and rotating reference frames},
      journal = {Journal of Computational Physics},
      year = {2007},
      volume = {220},
      pages = {678-711},
      doi = {http://dx.doi.org/10.1016/j.jcp.2006.05.024}
    }
    
    Pope, E., Kaiser, C., G., P. & Fangohr, H. Heating rate profiles in clusters of galaxies 2007 Heating versus Cooling in Galaxies and Clusters of Galaxies  inproceedings  
    BibTeX:
    @inproceedings{Pope2007,
      author = {Pope, E. and Kaiser, C. and Pavlovski G. and Fangohr, H.},
      title = {Heating rate profiles in clusters of galaxies},
      booktitle = {Heating versus Cooling in Galaxies and Clusters of Galaxies},
      publisher = {Springer},
      year = {2007},
      note = {Proceedings of the MPA/ESO/MPE/USM Joint Astronomy Conference held in Garching, Germany, 6-11 August 2006}
    }
    
    Pope, E.C.D., Pavlovski, G., Kaiser, C.R. & Fangohr, H. The effects of thermal conduction on the intracluster medium of the Virgo cluster 2005 Monthly Notices of the RAS
    Vol. 364, pp. 13-28 
    article DOI  
    BibTeX:
    @article{Pope2005,
      author = {Pope, E.~C.~D. and Pavlovski, G. and Kaiser, C.~R. and Fangohr, H.},
      title = {The effects of thermal conduction on the intracluster medium of the Virgo cluster},
      journal = {Monthly Notices of the RAS},
      year = {2005},
      volume = {364},
      pages = {13-28},
      doi = {http://dx.doi.org/10.1111/j.1365-2966.2005.09449.x}
    }
    
    Post, D. & Votta, L. Computational Science Demands a New Paradigm 2005 Physics Today
    Vol. 58(1), pp. 35-41 
    article  
    BibTeX:
    @article{Post2005,
      author = {Post, D.E. and Votta, L.G.},
      title = {Computational Science Demands a New Paradigm},
      journal = {Physics Today},
      year = {2005},
      volume = {58},
      number = {1},
      pages = {35--41}
    }
    
    Potter, T., Staveley-Smith, L., Kirk, J., Reville, B., Bicknell, G., Sutherland, R., Wagner, A., Zanardo, G. & Gerstmann, D. Asymmetric supernova remnants! 3D simulations of the expanding remnant of SN 1987A may shed light on the puzzle 2011 SCSS4: Supernovae and their Host Galaxies  article  
    BibTeX:
    @article{potter2011asymmetric,
      author = {Potter, T. and Staveley-Smith, L. and Kirk, J. and Reville, B. and Bicknell, G. and Sutherland, R. and Wagner, A. and Zanardo, G. and Gerstmann, D.},
      title = {Asymmetric supernova remnants! 3D simulations of the expanding remnant of SN 1987A may shed light on the puzzle},
      journal = {SCSS4: Supernovae and their Host Galaxies},
      year = {2011}
    }
    
    Price, D.J. & Federrath, C. A comparison between grid and particle methods on the statistics of driven, supersonic, isothermal turbulence 2010 Monthly Notices of the RAS
    Vol. 406, pp. 1659-1674 
    article DOI  
    BibTeX:
    @article{2010MNRAS.406.1659P,
      author = {Price, D.~J. and Federrath, C.},
      title = {A comparison between grid and particle methods on the statistics of driven, supersonic, isothermal turbulence},
      journal = {Monthly Notices of the RAS},
      year = {2010},
      volume = {406},
      pages = {1659-1674},
      doi = {http://dx.doi.org/10.1111/j.1365-2966.2010.16810.x}
    }
    
    Price, D.J., Federrath, C. & Brunt, C.M. The Density Variance-Mach Number Relation in Supersonic, Isothermal Turbulence 2011 The Astrophysical Journal Letters
    Vol. 727, pp. L21 
    article DOI  
    BibTeX:
    @article{2011ApJ...727L..21P,
      author = {Price, D.~J. and Federrath, C. and Brunt, C.~M.},
      title = {The Density Variance-Mach Number Relation in Supersonic, Isothermal Turbulence},
      journal = {The Astrophysical Journal Letters},
      year = {2011},
      volume = {727},
      pages = {L21},
      doi = {http://dx.doi.org/10.1088/2041-8205/727/1/L21}
    }
    
    Prokhorov, D., Antonuccio-Delogu, V. & Silk, J. Comptonization of the cosmic microwave background by high energy particles residing in AGN cocoons 2010 Arxiv preprint arXiv:1006.2564  article  
    BibTeX:
    @article{prokhorov2010comptonization,
      author = {Prokhorov, DA and Antonuccio-Delogu, V. and Silk, J.},
      title = {Comptonization of the cosmic microwave background by high energy particles residing in AGN cocoons},
      journal = {Arxiv preprint arXiv:1006.2564},
      year = {2010}
    }
    
    Pudritz, R.E. & Banerjee, R. The disc-jet connection 2005 Proceedings of the International Astronomical Union
    Vol. 1, pp. 163-173 
    article DOI  
    BibTeX:
    @article{Pudritz2005,
      author = {Pudritz, R. E. and Banerjee, R.},
      title = {The disc-jet connection},
      journal = {Proceedings of the International Astronomical Union},
      year = {2005},
      volume = {1},
      pages = {163--173},
      doi = {http://dx.doi.org/10.1017/S1743921305004497}
    }
    
    Raley, E.A., Shelton, R.L. & Plewa, T. A Study of the Vertical Motion of Supernova Remnant Bubbles in the Interstellar Medium Drawn from the Results of Three-Dimensional MHD Simulations 2007 Astrophysical Journal
    Vol. 661, pp. 222-235 
    article DOI  
    BibTeX:
    @article{Raley2007,
      author = {Raley, E.~A. and Shelton, R.~L. and Plewa, T.},
      title = {A Study of the Vertical Motion of Supernova Remnant Bubbles in the Interstellar Medium Drawn from the Results of Three-Dimensional MHD Simulations},
      journal = {Astrophysical Journal},
      year = {2007},
      volume = {661},
      pages = {222-235},
      doi = {http://dx.doi.org/10.1086/513136}
    }
    
    Ramaprabhu, P., Dimonte, G., Young, Y.-N., Calder, A.C. & Fryxell, B. Limits of the potential flow approach to the single-mode Rayleigh-Taylor problem 2006 Physical Review E
    Vol. 74(6), pp. 066308-+ 
    article DOI  
    BibTeX:
    @article{Ramaprabhu2006,
      author = {Ramaprabhu, P. and Dimonte, G. and Young, Y.-N. and Calder,A.~C. and Fryxell, B.},
      title = {Limits of the potential flow approach to the single-mode Rayleigh-Taylor problem},
      journal = {Physical Review E},
      year = {2006},
      volume = {74},
      number = {6},
      pages = {066308-+},
      doi = {http://dx.doi.org/10.1103/PhysRevE.74.066308}
    }
    
    Raskin, C., Timmes, F., Scannapieco, E., Diehl, S. & Fryer, C. On Type Ia supernovae from the collisions of two white dwarfs 2009 Monthly Notices of the Royal Astronomical Society: Letters
    Vol. 399(1), pp. L156-L159 
    article  
    BibTeX:
    @article{raskin2009type,
      author = {Raskin, C. and Timmes, FX and Scannapieco, E. and Diehl, S. and Fryer, C.},
      title = {On Type Ia supernovae from the collisions of two white dwarfs},
      journal = {Monthly Notices of the Royal Astronomical Society: Letters},
      publisher = {Wiley Online Library},
      year = {2009},
      volume = {399},
      number = {1},
      pages = {L156--L159}
    }
    
    Read, J., Hayfield, T. & Agertz, O. Resolving mixing in smoothed particle hydrodynamics 2010 Monthly Notices of the Royal Astronomical Society
    Vol. 405(3), pp. 1513-1530 
    article  
    BibTeX:
    @article{read2010resolving,
      author = {Read, JI and Hayfield, T. and Agertz, O.},
      title = {Resolving mixing in smoothed particle hydrodynamics},
      journal = {Monthly Notices of the Royal Astronomical Society},
      publisher = {Wiley Online Library},
      year = {2010},
      volume = {405},
      number = {3},
      pages = {1513--1530}
    }
    
    Reale, F. High Performance Computing at INAF/OAPA 2003 Memorie della Societa Astronomica Italiana Supplement
    Vol. 1, pp. 27-+ 
    article  
    Abstract: The scientific group at INAF/OAPA has a long experience in modeling astrophysical plasmas and in high performance computing (HPC). During 2000, INAF/OAPA has acquired a HPC facility, entirely devoted to extensive numerical modeling, in particular of astrophysical plasmas.
    BibTeX:
    @article{Reale2003,
      author = {Reale, F.},
      title = {High Performance Computing at INAF/OAPA},
      journal = {Memorie della Societa Astronomica Italiana Supplement},
      year = {2003},
      volume = {1},
      pages = {27-+}
    }
    
    Reale, F., Landi, E. & Orlando, S. Post-flare Ultraviolet Light Curves Explained with Thermal Instability of Loop Plasma 2012 The Astrophysical Journal
    Vol. 746, pp. 18 
    article DOI  
    BibTeX:
    @article{2012ApJ...746...18R,
      author = {Reale, F. and Landi, E. and Orlando, S.},
      title = {Post-flare Ultraviolet Light Curves Explained with Thermal Instability of Loop Plasma},
      journal = {The Astrophysical Journal},
      year = {2012},
      volume = {746},
      pages = {18},
      doi = {http://dx.doi.org/10.1088/0004-637X/746/1/18}
    }
    
    Reale, F. & Orlando, S. Nonequilibrium of Ionization and the Detection of Hot Plasma in Nanoflare-heated Coronal Loops 2008 apj
    Vol. 684, pp. 715-724 
    article DOI  
    BibTeX:
    @article{2008ApJ...684..715R,
      author = {Reale, F. and Orlando, S.},
      title = {Nonequilibrium of Ionization and the Detection of Hot Plasma in Nanoflare-heated Coronal Loops},
      journal = {apj},
      year = {2008},
      volume = {684},
      pages = {715-724},
      doi = {http://dx.doi.org/10.1086/590338}
    }
    
    Reale, F., Orlando, S., Testa, P., Peres, G., Landi, E. & Schrijver, C.J. Bright Hot Impacts by Erupted Fragments Falling Back on the Sun: A Template for Stellar Accretion 2013 Science
    Vol. 341, pp. 251- 
    article DOI  
    BibTeX:
    @article{reale2013,
      author = {Reale, F. and Orlando, S. and Testa, P. and Peres, G. and Landi, E. and Schrijver, C. J. },
      title = {Bright Hot Impacts by Erupted Fragments Falling Back on the Sun: A Template for Stellar Accretion},
      journal = {Science},
      year = {2013},
      volume = {341},
      pages = {251-},
      doi = {http://dx.doi.org/10.1126/science.1235692}
    }
    
    Remacle, J. & Shephard, M. An algorithm oriented mesh database 2003 Int. J. Numer. Meth. Engng
    Vol. 58, pp. 349-374 
    article  
    BibTeX:
    @article{Remacle2003,
      author = {Remacle, J.F. and Shephard, M.S.},
      title = {An algorithm oriented mesh database},
      journal = {Int. J. Numer. Meth. Engng},
      year = {2003},
      volume = {58},
      pages = {349--374}
    }
    
    Richardson, M.L., Scannapieco, E. & Thacker, R.J. Hybrid Cosmological Simulations with Stream Velocities 2013 The Astrophysical Journal
    Vol. 771(2), pp. 81 
    article  
    BibTeX:
    @article{richardson2013hybrid,
      author = {Richardson, Mark LA and Scannapieco, Evan and Thacker, Robert J},
      title = {Hybrid Cosmological Simulations with Stream Velocities},
      journal = {The Astrophysical Journal},
      publisher = {IOP Publishing},
      year = {2013},
      volume = {771},
      number = {2},
      pages = {81}
    }
    
    Ricker, P.M. A Direct Multigrid Poisson Solver for Oct-Tree Adaptive Meshes 2008 Astrophysical Journal Supplement Series
    Vol. 176, pp. 293-300 
    article URL 
    Abstract: We describe a finite-volume method for solving the Poisson equation on oct-tree adaptive meshes using direct solvers for individual mesh blocks. The method is a modified version of the method presented by Huang and Greengard, which works with finite-difference meshes and does not allow for shared boundaries between refined patches. Our algorithm is implemented within the FLASH code framework and makes use of the PARAMESH library, permitting efficient use of parallel computers. We describe the algorithm and present test results that demonstrate its accuracy.
    BibTeX:
    @article{ricker_direct_2008,
      author = {Ricker, P. M.},
      title = {A Direct Multigrid Poisson Solver for Oct-Tree Adaptive Meshes},
      journal = {Astrophysical Journal Supplement Series},
      year = {2008},
      volume = {176},
      pages = {293--300},
      url = {http://adsabs.harvard.edu/abs/2008ApJS..176..293R}
    }
    
    Ricker, P.M., Calder, A.C., Dursi, L.J., Fryxell, B., Lamb, D.Q., MacNeice, P., Olson, K., Rosner, R., Timmes, F.X., Truran, J.W., Tufo, H.M. & Zingale, M. Large-scale simulations of clusters of galaxies 2001 American Institute of Physics Conference Series, pp. 316-318  inproceedings DOI  
    BibTeX:
    @inproceedings{Ricker2001,
      author = {Ricker, P.~M. and Calder, A.~C. and Dursi, L.~J. and Fryxell, B. and Lamb, D.~Q. and MacNeice, P. and Olson, K. and Rosner, R. and Timmes, F.~X. and Truran, J.~W. and Tufo, H.~M. and Zingale, M. },
      title = {Large-scale simulations of clusters of galaxies},
      booktitle = {American Institute of Physics Conference Series},
      year = {2001},
      pages = {316-318},
      doi = {http://dx.doi.org/10.1063/1.1405337}
    }
    
    Ricker, P.M., Dodelson, S. & Lamb, D.Q. COSMOS: A Hybrid N-Body/Hydrodynamics Code for Cosmological Problems 2000 Astrophysical Journal
    Vol. 536, pp. 122-143 
    article DOI  
    BibTeX:
    @article{Ricker2000,
      author = {Ricker, P.~M. and Dodelson, S. and Lamb, D.~Q.},
      title = {COSMOS: A Hybrid N-Body/Hydrodynamics Code for Cosmological Problems},
      journal = {Astrophysical Journal},
      year = {2000},
      volume = {536},
      pages = {122-143},
      doi = {http://dx.doi.org/10.1086/308908}
    }
    
    Ricker, P.M., Pan, K.-C.. & Taam, R.E. The Impact of Type Ia Supernova Ejecta on Binary Companions 2010
    Vol. 1314American Institute of Physics Conference Series, pp. 250-255 
    inproceedings DOI  
    BibTeX:
    @inproceedings{ricker_impact_2010,
      author = {Ricker, P. M. and Pan, K.-C. and Taam, R. E.},
      title = {The Impact of Type Ia Supernova Ejecta on Binary Companions},
      booktitle = {American Institute of Physics Conference Series},
      year = {2010},
      volume = {1314},
      pages = {250--255},
      doi = {http://dx.doi.org/10.1063/1.3536379}
    }
    
    Ricker, P.M., Robinson, K., Dursi, L.J., Rosner, R., Calder, A.C., Zingale, M., Truran, J.W., Linde, T., Caceres, A., Fryxell, B., Olson, K., Riley, K., Siegel, A. & Vladimirova, N. Simulations of Rising Hydrodynamic and Magnetohydrodynamic Bubbles 2004 The Riddle of Cooling Flows in Galaxies and Clusters of galaxies, pp. 95-+  inproceedings  
    BibTeX:
    @inproceedings{Ricker2004,
      author = {Ricker, P.~M. and Robinson, K. and Dursi, L.~J. and Rosner, R. and Calder, A.~C. and Zingale, M. and Truran, J.~W. and Linde, T. and Caceres, A. and Fryxell, B. and Olson, K. and Riley, K. and Siegel, A. and Vladimirova, N.},
      title = {Simulations of Rising Hydrodynamic and Magnetohydrodynamic Bubbles},
      booktitle = {The Riddle of Cooling Flows in Galaxies and Clusters of galaxies},
      year = {2004},
      pages = {95-+}
    }
    
    Ricker, P.M. & Taam, R.E. An AMR Study of the Common-envelope Phase of Binary Evolution 2012 The Astrophysical Journal
    Vol. 746, pp. 74 
    article DOI  
    BibTeX:
    @article{ricker_amr_2012,
      author = {Ricker, P. M. and Taam, R. E.},
      title = {An AMR Study of the Common-envelope Phase of Binary Evolution},
      journal = {The Astrophysical Journal},
      year = {2012},
      volume = {746},
      pages = {74},
      doi = {http://dx.doi.org/10.1088/0004-637X/746/1/74}
    }
    
    Ricker, P.M. & Taam, R.E. The Interaction of Stellar Objects within a Common Envelope 2008 Astrophysical Journal
    Vol. 672, pp. L41-L44 
    article URL 
    Abstract: We use high-resolution, three-dimensional hydrodynamic simulations to study the hydrodynamic and gravitational interaction between stellar companions embedded within a differentially rotating common envelope. We evaluate the contributions of the nonaxisymmetric gravitational tides and ram pressure forces to the drag force and, hence, to the dissipation rate and the mass accumulated onto the stellar companion. We find that the gravitational drag dominates the hydrodynamic drag during the inspiral phase, implying that a simple prescription based on a gravitational capture radius significantly underestimates the dissipation rate and overestimates the inspiral decay timescale. Although the mass accretion rate fluctuates significantly, we observe a secular trend leading to an effective rate that is significantly less than the rate based on a gravitational capture radius. We discuss the implications of these results within the context of accretion by compact objects in the common-envelope phase.
    BibTeX:
    @article{ricker_interaction_2008,
      author = {Ricker, Paul M. and Taam, Ronald E.},
      title = {The Interaction of Stellar Objects within a Common Envelope},
      journal = {Astrophysical Journal},
      year = {2008},
      volume = {672},
      pages = {L41--L44},
      url = {http://adsabs.harvard.edu/abs/2008ApJ...672L..41R}
    }
    
    Rijkhorst, E., Icke, V. & Mellema, G. 3D AMR Simulations of Point-Symmetric Nebulae 2005
    Vol. 41Adaptive Mesh Refinement -- Theory and Applications 
    inproceedings  
    BibTeX:
    @inproceedings{Rijkhorst2005a,
      author = {Rijkhorst, E.J. and Icke, V. and Mellema, G.},
      title = {3D AMR Simulations of Point-Symmetric Nebulae},
      booktitle = {Adaptive Mesh Refinement -- Theory and Applications},
      publisher = {Springer},
      year = {2005},
      volume = {41},
      note = {Proceedings of the Chicago Workshop on Adaptive Mesh Refinement Methods, September 3--5, 2003}
    }
    
    Rijkhorst, E.-J., Icke, V. & Mellema, G. Three-Dimensional Adaptive Mesh Refinement Simulations of Point-Symmetric Nebulae 2004 ASP Conf. Ser. 313: Asymmetrical Planetary Nebulae III: Winds, Structure and the Thunderbird, pp. 472-+  inproceedings  
    BibTeX:
    @inproceedings{Rijkhorst2004,
      author = {Rijkhorst, E.-J. and Icke, V. and Mellema, G.},
      title = {Three-Dimensional Adaptive Mesh Refinement Simulations of Point-Symmetric Nebulae},
      booktitle = {ASP Conf. Ser. 313: Asymmetrical Planetary Nebulae III: Winds, Structure and the Thunderbird},
      year = {2004},
      pages = {472-+}
    }
    
    Rijkhorst, E.-J., Mellema, G. & Icke, V. Blowing up warped disks in 3D. Three-dimensional AMR simulations of point-symmetric nebulae 2005 Astronomy and Astrophysics
    Vol. 444, pp. 849-860 
    article DOI  
    BibTeX:
    @article{Rijkhorst2005,
      author = {Rijkhorst, E.-J. and Mellema, G. and Icke, V.},
      title = {Blowing up warped disks in 3D. Three-dimensional AMR simulations of point-symmetric nebulae},
      journal = {Astronomy and Astrophysics},
      year = {2005},
      volume = {444},
      pages = {849-860},
      doi = {http://dx.doi.org/10.1051/0004-6361:20041971}
    }
    
    Rijkhorst, E.-J., Plewa, T., Dubey, A. & Mellema, G. Hybrid characteristics: 3D radiative transfer for parallel adaptive mesh refinement hydrodynamics 2006 Astronomy and Astrophysics
    Vol. 452, pp. 907-920 
    article DOI  
    BibTeX:
    @article{Rijkhorst2006,
      author = {Rijkhorst, E.-J. and Plewa, T. and Dubey, A. and Mellema, G. },
      title = {Hybrid characteristics: 3D radiative transfer for parallel adaptive mesh refinement hydrodynamics},
      journal = {Astronomy and Astrophysics},
      year = {2006},
      volume = {452},
      pages = {907-920},
      doi = {http://dx.doi.org/10.1051/0004-6361:20053401}
    }
    
    Ritter, J., Safranek-Shrader, C., Gnat, O., Milosavljevic, M. & Bromm, V. Confined Population III Enrichment and the Prospects for Prompt Second-Generation Star Formation 2012 Arxiv preprint arXiv:1203.2957  article  
    BibTeX:
    @article{ritter2012confined,
      author = {Ritter, J.S. and Safranek-Shrader, C. and Gnat, O. and Milosavljevic, M. and Bromm, V.},
      title = {Confined Population III Enrichment and the Prospects for Prompt Second-Generation Star Formation},
      journal = {Arxiv preprint arXiv:1203.2957},
      year = {2012}
    }
    
    Robinson, K., Dursi, L.J., Ricker, P.M., Rosner, R., Calder, A.C., Zingale, M., Truran, J.W., Linde, T., Caceres, A., Fryxell, B., Olson, K., Riley, K., Siegel, A. & Vladimirova, N. Morphology of Rising Hydrodynamic and Magnetohydrodynamic Bubbles from Numerical Simulations 2004 Astrophysical Journal
    Vol. 601, pp. 621-643 
    article DOI  
    BibTeX:
    @article{Robinson2004,
      author = {Robinson, K. and Dursi, L.~J. and Ricker, P.~M. and Rosner, R. and Calder, A.~C. and Zingale, M. and Truran, J.~W. and Linde, T. and Caceres, A. and Fryxell, B. and Olson, K. and Riley, K. and Siegel, A. and Vladimirova, N.},
      title = {Morphology of Rising Hydrodynamic and Magnetohydrodynamic Bubbles from Numerical Simulations},
      journal = {Astrophysical Journal},
      year = {2004},
      volume = {601},
      pages = {621-643},
      doi = {http://dx.doi.org/10.1086/380817}
    }
    
    Roediger, E., Kraft, R., Forman, W., Nulsen, P. & Churazov, E. Kelvin-Helmholtz instabilities at the sloshing cold fronts in the Virgo cluster as a measure for the effective ICM viscosity 2012 arXiv preprint arXiv:1211.4874  article  
    BibTeX:
    @article{roediger2012kelvin,
      author = {Roediger, E. and Kraft, RP and Forman, WR and Nulsen, PEJ and Churazov, E.},
      title = {Kelvin-Helmholtz instabilities at the sloshing cold fronts in the Virgo cluster as a measure for the effective ICM viscosity},
      journal = {arXiv preprint arXiv:1211.4874},
      year = {2012}
    }
    
    Roediger, E., Lovisari, L., Dupke, R., Ghizzardi, S., Brüggen, M., Kraft, R. & Machacek, M. Gas sloshing, cold fronts, Kelvin--Helmholtz instabilities and the merger history of the cluster of galaxies Abell 496 2012 Monthly Notices of the Royal Astronomical Society  article  
    BibTeX:
    @article{roediger2012gas,
      author = {Roediger, E. and Lovisari, L. and Dupke, R. and Ghizzardi, S. and Brüggen, M. and Kraft, RP and Machacek, ME},
      title = {Gas sloshing, cold fronts, Kelvin--Helmholtz instabilities and the merger history of the cluster of galaxies Abell 496},
      journal = {Monthly Notices of the Royal Astronomical Society},
      publisher = {Wiley Online Library},
      year = {2012}
    }
    
    Roediger, E. & ZuHone, J.A. Fast simulations of gas sloshing and cold front formation 2012 Monthly Notices of the Royal Astronomical Society  article URL 
    BibTeX:
    @article{roediger2012fast,
      author = {Roediger, E. and ZuHone, J. A.},
      title = {Fast simulations of gas sloshing and cold front formation},
      journal = {Monthly Notices of the Royal Astronomical Society},
      publisher = {Wiley Online Library},
      year = {2012},
      url = {http://arxiv.org/abs/1109.2593}
    }
    
    Roediger, E. & Brüggen, M. Ram pressure stripping in a viscous intracluster medium 2008 Monthly Notices of the RAS
    Vol. 388, pp. L89-L93 
    article DOI  
    BibTeX:
    @article{2008MNRAS.388L..89R,
      author = {Roediger, E. and Brüggen, M.},
      title = {Ram pressure stripping in a viscous intracluster medium},
      journal = {Monthly Notices of the RAS},
      year = {2008},
      volume = {388},
      pages = {L89-L93},
      doi = {http://dx.doi.org/10.1111/j.1745-3933.2008.00506.x}
    }
    
    Roediger, E. & Brüggen, M. Ram pressure stripping of disc galaxies orbiting in clusters. II. Galactic wakes 2008 Monthly Notices of the RAS  article  
    BibTeX:
    @article{Roediger2008,
      author = {Roediger, E. and Brüggen, M.},
      title = {Ram pressure stripping of disc galaxies orbiting in clusters. II. Galactic wakes},
      journal = {Monthly Notices of the RAS},
      year = {2008},
      note = {accepted for publication}
    }
    
    Roediger, E. & Brüggen, M. Ram-pressure stripping of disc galaxies orbiting in clusters - II. Galactic wakes 2008 Monthly Notices of the RAS
    Vol. 388, pp. 465-486 
    article DOI  
    BibTeX:
    @article{Roediger2008a,
      author = {Roediger, E. and Brüggen, M.},
      title = {Ram-pressure stripping of disc galaxies orbiting in clusters - II. Galactic wakes},
      journal = {Monthly Notices of the RAS},
      year = {2008},
      volume = {388},
      pages = {465-486},
      doi = {http://dx.doi.org/10.1111/j.1365-2966.2008.13415.x}
    }
    
    Roediger, E. & Brüggen, M. Ram pressure stripping of disc galaxies orbiting in clusters - I. Mass and radius of the remaining gas disc 2007 Monthly Notices of the RAS
    Vol. 380, pp. 1399-1408 
    article DOI  
    BibTeX:
    @article{Roediger2007b,
      author = {Roediger, E. and Brüggen, M.},
      title = {Ram pressure stripping of disc galaxies orbiting in clusters - I. Mass and radius of the remaining gas disc},
      journal = {Monthly Notices of the RAS},
      year = {2007},
      volume = {380},
      pages = {1399-1408},
      doi = {http://dx.doi.org/10.1111/j.1365-2966.2007.12241.x}
    }
    
    Roediger, E. & Brüggen, M. Ram pressure stripping of disc galaxies: the role of the inclination angle 2006 Monthly Notices of the RAS
    Vol. 369, pp. 567-580 
    article DOI  
    BibTeX:
    @article{Roediger2006,
      author = {Roediger, E. and Brüggen, M.},
      title = {Ram pressure stripping of disc galaxies: the role of the inclination angle},
      journal = {Monthly Notices of the RAS},
      year = {2006},
      volume = {369},
      pages = {567-580},
      doi = {http://dx.doi.org/10.1111/j.1365-2966.2006.10335.x}
    }
    
    Roediger, E., Brüggen, M. & Hoeft, M. Wakes of ram-pressure-stripped disc galaxies 2006 Monthly Notices of the RAS
    Vol. 371, pp. 609-618 
    article DOI  
    BibTeX:
    @article{Roediger2006a,
      author = {Roediger, E. and Brüggen, M. and Hoeft, M.},
      title = {Wakes of ram-pressure-stripped disc galaxies},
      journal = {Monthly Notices of the RAS},
      year = {2006},
      volume = {371},
      pages = {609-618},
      doi = {http://dx.doi.org/10.1111/j.1365-2966.2006.10726.x}
    }
    
    Roediger, E., Brüggen, M., Rebusco, P., Böhringer, H. & Churazov, E. Metal mixing by buoyant bubbles in galaxy clusters 2007 Monthly Notices of the RAS, pp. 1465-+  article DOI  
    BibTeX:
    @article{Roediger2007,
      author = {Roediger, E. and Brüggen, M. and Rebusco, P. and Böhringer, H. and Churazov, E.},
      title = {Metal mixing by buoyant bubbles in galaxy clusters},
      journal = {Monthly Notices of the RAS},
      year = {2007},
      pages = {1465-+},
      doi = {http://dx.doi.org/10.1111/j.1365-2966.2006.11300.x}
    }
    
    Rosner, R. & Alexakis, A. Fluid Dynamics and Dynamos in Astrophysics and Geophysics 2005 , pp. 63-78  inbook  
    BibTeX:
    @inbook{Rosner2005,
      author = {Rosner, R. and Alexakis, A.},
      title = {Fluid Dynamics and Dynamos in Astrophysics and Geophysics},
      publisher = {Taylor & Francis},
      year = {2005},
      pages = {63--78},
      note = {Reviews emerging from the Durham Symposium on Astrophysical Fluide Mechanics}
    }
    
    Rosner, R., Calder, A.C., Dursi, L.J., Fryxell, B., Lamb, D.Q., Niemeyer, J.C., Olson, K., Ricker, P., Timmes, F.X., Truran, J.W., Tufo, H., Young, Y., Zingale, M., Lusk, E. & Stevens, R. Flash Code: Studying Astrophysical Thermonuclear Flashes 2000 Computing in Science and Engineering, vol.~2, p.~33.
    Vol. 2, pp. 33-+ 
    article  
    BibTeX:
    @article{Rosner2000,
      author = {Rosner, R. and Calder, A.~C. and Dursi, L.~J. and Fryxell, B. and Lamb, D.~Q. and Niemeyer, J.~C. and Olson, K. and Ricker, P. and Timmes, F.~X. and Truran, J.~W. and Tufo, H. and Young, Y. and Zingale, M. and Lusk, E. and Stevens, R.},
      title = {Flash Code: Studying Astrophysical Thermonuclear Flashes},
      journal = {Computing in Science and Engineering, vol.~2, p.~33.},
      year = {2000},
      volume = {2},
      pages = {33-+}
    }
    
    Ross, R., Latham, R., Gropp, W., Lusk, E. & Thakur, R. Processing MPI Datatypes Outside MPI 2009 Proceedings of the 16th European PVM/MPI Users' Group Meeting on Recent Advances in Parallel Virtual Machine and Message Passing Interface, pp. 42-53  inproceedings DOI  
    BibTeX:
    @inproceedings{Ross2009,
      author = {Ross, Robert and Latham, Robert and Gropp, William and Lusk, Ewing and Thakur, Rajeev},
      title = {Processing MPI Datatypes Outside MPI},
      booktitle = {Proceedings of the 16th European PVM/MPI Users' Group Meeting on Recent Advances in Parallel Virtual Machine and Message Passing Interface},
      publisher = {Springer-Verlag},
      year = {2009},
      pages = {42--53},
      doi = {http://dx.doi.org/10.1007/978-3-642-03770-2_11}
    }
    
    Ross, R., Miller, N. & Gropp, W. Implementing fast and reusable datatype processing 2003 EuroPVM/MPI  article  
    BibTeX:
    @article{Ross2003,
      author = {Ross, R. and Miller, N. and Gropp, W.},
      title = {Implementing fast and reusable datatype processing},
      journal = {EuroPVM/MPI},
      publisher = {Springer},
      year = {2003}
    }
    
    Ross, R., Nurmi, D., Cheng, A. & Zingale, M. A case study in application I/O on Linux clusters 2001 Supercomputing '01: Proceedings of the 2001 ACM/IEEE conference on Supercomputing (CDROM), pp. 11-11  inproceedings DOI  
    BibTeX:
    @inproceedings{Ross2001,
      author = {Robert Ross and Daniel Nurmi and Albert Cheng and Michael Zingale},
      title = {A case study in application I/O on Linux clusters},
      booktitle = {Supercomputing '01: Proceedings of the 2001 ACM/IEEE conference on Supercomputing (CDROM)},
      publisher = {ACM Press},
      year = {2001},
      pages = {11--11},
      doi = {http://doi.acm.org/10.1145/582034.582045}
    }
    
    Rosswog, S., Kasen, D., Guillochon, J. & Ramirez-Ruiz, E. COLLISIONS OF WHITE DWARFS AS A NEW PROGENITOR CHANNEL FOR TYPE Ia SUPERNOVAE 2009 The Astrophysical Journal Letters
    Vol. 705(2), pp. L128-L132 
    article URL 
    Abstract: We present the results of a systematic numerical study of an alternative progenitor scenario to produce Type Ia supernova explosions, which is not restricted to the ignition of a CO white dwarf (WD) near the Chandrasekhar mass. In this scenario, a shock-triggered thermonuclear explosion ensues from the collision of two WDs. Consistent modeling of the gas dynamics together with nuclear reactions using both a smoothed particle and a grid-based hydrodynamics code are performed to study the viability of this alternative progenitor channel. We find that shock-triggered ignition and the synthesis of Ni are in fact a natural outcome for moderately massive WD pairs colliding close to head-on. We use a multi-dimensional radiative transfer code to calculate the emergent broadband light curves and spectral time series of these events. The synthetic spectra and light curves compare well to those of normal Type Ia supernovae over a similar B-band decline rate and are broadly consistent with the Phillips relation, although a mild dependence on viewing angle is observed due to the asymmetry of the ejected debris. While event rates within galactic centers and globular clusters are found to be much too low to explain the bulk of the Type Ia supernovae population, they may be frequent enough to make as much as a one percent contribution to the overall rate. Although these rate estimates are still subject to substantial uncertainties, they do suggest that dense stellar systems should provide upcoming supernova surveys with hundreds of such collision-induced thermonuclear explosions per year.
    BibTeX:
    @article{Rosswog2009,
      author = {Stephan Rosswog and Daniel Kasen and James Guillochon and and Enrico Ramirez-Ruiz},
      title = {COLLISIONS OF WHITE DWARFS AS A NEW PROGENITOR CHANNEL FOR TYPE Ia SUPERNOVAE},
      journal = {The Astrophysical Journal Letters},
      year = {2009},
      volume = {705},
      number = {2},
      pages = {L128-L132},
      url = {http://stacks.iop.org/1538-4357/705/L128}
    }
    
    Rosswog, S., Kasen, D., Guillochon, J. & Ramirez-Ruiz, E. Collisions of white dwarfs as a new progenitor channel for type Ia supernovae 2009 The Astrophysical Journal Letters
    Vol. 705, pp. L128 
    article  
    BibTeX:
    @article{rosswog2009collisions,
      author = {Rosswog, S. and Kasen, D. and Guillochon, J. and Ramirez-Ruiz, E.},
      title = {Collisions of white dwarfs as a new progenitor channel for type Ia supernovae},
      journal = {The Astrophysical Journal Letters},
      publisher = {IOP Publishing},
      year = {2009},
      volume = {705},
      pages = {L128}
    }
    
    Rubini, F., Lorusso, S., Del Zanna, L. & Bacciotti, F. Proper motions of radiative knots in simulations of stellar jets 2007 Astronomy & Astrophysics
    Vol. 472, pp. 855-865 
    article  
    BibTeX:
    @article{Rubini2007,
      author = {Rubini, F. and Lorusso, S. and Del Zanna, L. and Bacciotti, F.},
      title = {Proper motions of radiative knots in simulations of stellar jets},
      journal = {Astronomy & Astrophysics},
      year = {2007},
      volume = {472},
      pages = {855--865}
    }
    
    Rudy, R.J., Lynch, D.K., Mazuk, S.M., Venturini, C.C., Russell, R.W., Puetter, R.C., Perry, R.B., Woodward, C.E., Schwarz, G.J., Bode, M.F., Evans, A., Geballe, T.R., Gehrz, R.D., Greenhouse, M.A., Hauschildt, P.A., Helton, L.A., Lyke, J.E., Salama, A., Shore, S.N., Starrfield, S.G., Truran, J.W. & Wagner, R.M. Spitzer Space Telescope and Visible/IR Spectrophotometry of V574 Pupis (Nova Pupis 2004) 2006
    Vol. 209American Astronomical Society Meeting Abstracts, pp. 06-+ 
    misc  
    BibTeX:
    @misc{Rudy2006,
      author = {Rudy, R.~J. and Lynch, D.~K. and Mazuk, S.~M. and Venturini, C.~C. and Russell, R.~W. and Puetter, R.~C. and Perry, R.~B. and Woodward, C.~E. and Schwarz, G.~J. and Bode, M.~F. and Evans, A. and Geballe, T.~R. and Gehrz, R.~D. and Greenhouse, M.~A. and Hauschildt, P.~A. and Helton, L.~A. and Lyke, J.~E. and Salama, A. and Shore, S.~N. and Starrfield, S.~G. and Truran, J.~W. and Wagner, R.~M.},
      title = {Spitzer Space Telescope and Visible/IR Spectrophotometry of V574 Pupis (Nova Pupis 2004)},
      booktitle = {American Astronomical Society Meeting Abstracts},
      year = {2006},
      volume = {209},
      pages = {06-+}
    }
    
    Ruszkowski, M., Lee, D., Brüggen, M., Parrish, I. & Oh, S.P. Cosmological Magnetohydrodynamic Simulations of Cluster Formation with Anisotropic Thermal Conduction 2011 Journal of Astrophysics
    Vol. 740(2), pp. 81 
    article URL 
    BibTeX:
    @article{0004-637X-740-2-81,
      author = {M. Ruszkowski and D. Lee and M. Brüggen and I. Parrish and S. Peng Oh},
      title = {Cosmological Magnetohydrodynamic Simulations of Cluster Formation with Anisotropic Thermal Conduction},
      journal = {Journal of Astrophysics},
      year = {2011},
      volume = {740},
      number = {2},
      pages = {81},
      url = {http://stacks.iop.org/0004-637X/740/i=2/a=81}
    }
    
    Ruszkowski, M., Brüggen, M. & Begelman, M.C. Three-Dimensional Simulations of Viscous Dissipation in the Intracluster Medium 2004 Astrophysical Journal
    Vol. 615, pp. 675-680 
    article DOI  
    BibTeX:
    @article{Ruszkowski2004,
      author = {Ruszkowski, M. and Brüggen, M. and Begelman, M.~C. },
      title = {Three-Dimensional Simulations of Viscous Dissipation in the Intracluster Medium},
      journal = {Astrophysical Journal},
      year = {2004},
      volume = {615},
      pages = {675-680},
      doi = {http://dx.doi.org/10.1086/424702}
    }
    
    Ruszkowski, M., Brüggen, M. & Begelman, M.C. Cluster Heating by Viscous Dissipation of Sound Waves 2004 Astrophysical Journal
    Vol. 611, pp. 158-163 
    article DOI  
    BibTeX:
    @article{Ruszkowski2004a,
      author = {Ruszkowski, M. and Brüggen, M. and Begelman, M.~C.},
      title = {Cluster Heating by Viscous Dissipation of Sound Waves},
      journal = {Astrophysical Journal},
      year = {2004},
      volume = {611},
      pages = {158-163},
      doi = {http://dx.doi.org/10.1086/422158}
    }
    
    Ruszkowski, M., Brüggen, M., Lee, D. & Shin, M.-S. The Flying Spaghetti Monster: Impact of magnetic fields on ram pressure stripping in disk galaxies 2012 ArXiv e-prints  article  
    BibTeX:
    @article{2012arXiv1203.1343R,
      author = {Ruszkowski, M. and Brüggen, M. and Lee, D. and Shin, M.-S. },
      title = {The Flying Spaghetti Monster: Impact of magnetic fields on ram pressure stripping in disk galaxies},
      journal = {ArXiv e-prints},
      year = {2012}
    }
    
    Ruszkowski, M. & Oh, S.P. Galaxy motions, turbulence and conduction in clusters of galaxies 2011 Monthly Notices of the RAS
    Vol. 414, pp. 1493-1507 
    article DOI  
    BibTeX:
    @article{2011MNRAS.414.1493R,
      author = {Ruszkowski, M. and Oh, S.~P.},
      title = {Galaxy motions, turbulence and conduction in clusters of galaxies},
      journal = {Monthly Notices of the RAS},
      year = {2011},
      volume = {414},
      pages = {1493-1507},
      doi = {http://dx.doi.org/10.1111/j.1365-2966.2011.18482.x}
    }
    
    Ruszkowski, M. & Oh, S.P. Shaken and Stirred: Conduction and Turbulence in Clusters of Galaxies 2010 The Astrophysical Journal
    Vol. 713, pp. 1332-1342 
    article DOI  
    BibTeX:
    @article{2010ApJ...713.1332R,
      author = {Ruszkowski, M. and Oh, S.~P.},
      title = {Shaken and Stirred: Conduction and Turbulence in Clusters of Galaxies},
      journal = {The Astrophysical Journal},
      year = {2010},
      volume = {713},
      pages = {1332-1342},
      doi = {http://dx.doi.org/10.1088/0004-637X/713/2/1332}
    }
    
    Ryzhik, L. & Zlatos, A. KPP pulsating front speed-up by flows 2007 Communications in Mathematical Sciences, to appear  article  
    BibTeX:
    @article{Ryzhik2007,
      author = {Ryzhik, L. and Zlatos, A. },
      title = {KPP pulsating front speed-up by flows},
      journal = {Communications in Mathematical Sciences, to appear},
      year = {2007}
    }
    
    Sacco, G., Argiroffi, C., Orlando, S., Maggio, A., Peres, G. & Reale, F. Hydrodynamic Modeling of Accretion Shock on CTTSs 2009 Protostellar Jets in Context, pp. 607-609  article  
    BibTeX:
    @article{sacco2009hydrodynamic,
      author = {Sacco, G.G. and Argiroffi, C. and Orlando, S. and Maggio, A. and Peres, G. and Reale, F.},
      title = {Hydrodynamic Modeling of Accretion Shock on CTTSs},
      journal = {Protostellar Jets in Context},
      year = {2009},
      pages = {607--609}
    }
    
    Sacco, G.G., Argiroffi, C., Orlando, S., Maggio, A., Peres, G. & Reale, F. X-ray emission from dense plasma in classical T Tauri stars: hydrodynamic modeling of the accretion shock 2008 Astronomy and Astrophysics
    Vol. 491, pp. L17-L20 
    article DOI  
    BibTeX:
    @article{Sacco2008,
      author = {Sacco, G.~G. and Argiroffi, C. and Orlando, S. and Maggio, A. and Peres, G. and Reale, F.},
      title = {X-ray emission from dense plasma in classical T Tauri stars: hydrodynamic modeling of the accretion shock},
      journal = {Astronomy and Astrophysics},
      year = {2008},
      volume = {491},
      pages = {L17-L20},
      doi = {http://dx.doi.org/10.1051/0004-6361:200810753}
    }
    
    Sacco, G.G., Orlando, S., Argiroffi, C., Maggio, A., Peres, G., Reale, F. & Curran, R.L. On the observability of T Tauri accretion shocks in the X-ray band 2010 Astronomy and Astrophysics
    Vol. 522, pp. A55 
    article DOI  
    BibTeX:
    @article{2010A&A...522A..55S,
      author = {Sacco, G.~G. and Orlando, S. and Argiroffi, C. and Maggio, A. and Peres, G. and Reale, F. and Curran, R.~L.},
      title = {On the observability of T Tauri accretion shocks in the X-ray band},
      journal = {Astronomy and Astrophysics},
      year = {2010},
      volume = {522},
      pages = {A55},
      doi = {http://dx.doi.org/10.1051/0004-6361/201014950}
    }
    
    Safranek-Shrader, C., Agarwal, M., Federrath, C., Dubey, A., Milosavljević, M. & Bromm, V. Star formation in the first galaxies--I. Collapse delayed by Lyman--Werner radiation 2012 Monthly Notices of the Royal Astronomical Society
    Vol. 426(2), pp. 1159-1177 
    article  
    BibTeX:
    @article{safranek2012star,
      author = {Safranek-Shrader, C. and Agarwal, M. and Federrath, C. and Dubey, A. and Milosavljević, M. and Bromm, V.},
      title = {Star formation in the first galaxies--I. Collapse delayed by Lyman--Werner radiation},
      journal = {Monthly Notices of the Royal Astronomical Society},
      publisher = {Wiley Online Library},
      year = {2012},
      volume = {426},
      number = {2},
      pages = {1159--1177}
    }
    
    Safranek-Shrader, C., Agarwal, M., Milosavljevic, M. & Bromm, V. Primordial Star Formation in the First Galaxies 2011
    Vol. 1New Horizons in Astronomy, Proceedings of the Frank N. Bash Symposium 2011, held October 9-11, 2011. Austin, Texas, USA. Edited by S. Salviander, J. Green, and A. Pawlik. Published online at http://pos. sissa. it/cgi-bin/reader/conf. cgi? confid= 149., id. 30, pp. 30 
    inproceedings  
    BibTeX:
    @inproceedings{safranek2011primordial,
      author = {Safranek-Shrader, C. and Agarwal, M. and Milosavljevic, M. and Bromm, V.},
      title = {Primordial Star Formation in the First Galaxies},
      booktitle = {New Horizons in Astronomy, Proceedings of the Frank N. Bash Symposium 2011, held October 9-11, 2011. Austin, Texas, USA. Edited by S. Salviander, J. Green, and A. Pawlik. Published online at http://pos. sissa. it/cgi-bin/reader/conf. cgi? confid= 149., id. 30},
      year = {2011},
      volume = {1},
      pages = {30}
    }
    
    Safranek-Shrader, C., Milosavljevic, M. & Bromm, V. Star Formation in the First Galaxies-II: Clustered Star Formation and the Influence of Metal Line Cooling 2013 arXiv preprint arXiv:1307.1982  article  
    BibTeX:
    @article{safranek2013star,
      author = {Safranek-Shrader, Chalence and Milosavljevic, Milos and Bromm, Volker},
      title = {Star Formation in the First Galaxies-II: Clustered Star Formation and the Influence of Metal Line Cooling},
      journal = {arXiv preprint arXiv:1307.1982},
      year = {2013}
    }
    
    Scannapieco, E. & Brüggen, M. Simulating supersonic turbulence in galaxy outflows 2010 Monthly Notices of the Royal Astronomical Society
    Vol. 405(3), pp. 1634-1653 
    article  
    BibTeX:
    @article{scannapieco2010simulating,
      author = {Scannapieco, E. and Brüggen, M.},
      title = {Simulating supersonic turbulence in galaxy outflows},
      journal = {Monthly Notices of the Royal Astronomical Society},
      publisher = {Wiley Online Library},
      year = {2010},
      volume = {405},
      number = {3},
      pages = {1634--1653}
    }
    
    Scannapieco, E. & Brüggen, M. Subgrid Modeling of AGN-driven Turbulence in Galaxy Clusters 2008 The Astrophysical Journal
    Vol. 686, pp. 927 
    article  
    BibTeX:
    @article{scannapieco2008subgrid,
      author = {Scannapieco, E. and Brüggen, M.},
      title = {Subgrid Modeling of AGN-driven Turbulence in Galaxy Clusters},
      journal = {The Astrophysical Journal},
      publisher = {IOP Publishing},
      year = {2008},
      volume = {686},
      pages = {927}
    }
    
    Scannapieco, E., Gray, W. & Pan, L. Identification of a Fundamental Transition in a Turbulently Supported Interstellar Medium 2012 The Astrophysical Journal
    Vol. 746, pp. 57 
    article  
    BibTeX:
    @article{scannapieco2012identification,
      author = {Scannapieco, E. and Gray, W.J. and Pan, L.},
      title = {Identification of a Fundamental Transition in a Turbulently Supported Interstellar Medium},
      journal = {The Astrophysical Journal},
      publisher = {IOP Publishing},
      year = {2012},
      volume = {746},
      pages = {57}
    }
    
    Scannapieco, E. & Brüggen, M. The Role of Turbulence in AGN Self-Regulation in Galaxy Clusters 2009 ArXiv e-prints  article  
    BibTeX:
    @article{2009arXiv0909.1805S,
      author = {Scannapieco, E. and Brüggen, M.},
      title = {The Role of Turbulence in AGN Self-Regulation in Galaxy Clusters},
      journal = {ArXiv e-prints},
      year = {2009}
    }
    
    Scheck, L., Plewa, T., Janka, H.-T., Kifonidis, K. & Müller, E. Pulsar Recoil by Large-Scale Anisotropies in Supernova Explosions 2004 Physical Review Letters
    Vol. 92(1), pp. 011103-+ 
    article  
    BibTeX:
    @article{Scheck2004,
      author = {Scheck, L. and Plewa, T. and Janka, H.-T. and Kifonidis, K. and Müller, E.},
      title = {Pulsar Recoil by Large-Scale Anisotropies in Supernova Explosions},
      journal = {Physical Review Letters},
      year = {2004},
      volume = {92},
      number = {1},
      pages = {011103-+}
    }
    
    Schendel, E., Jin, Y., Shah, N., Chen, J., Chang, C., Ku, S., Ethier, S., Klasky, S., Latham, R., Ross, R. & others ISOBAR preconditioner for effective and high-throughput lossless data compression 2012 Data Engineering (ICDE), 2012 IEEE 28th International Conference on, pp. 138-149  inproceedings  
    BibTeX:
    @inproceedings{schendel2012isobar,
      author = {Schendel, E.R. and Jin, Y. and Shah, N. and Chen, J. and Chang, CS and Ku, S.H. and Ethier, S. and Klasky, S. and Latham, R. and Ross, R. and others},
      title = {ISOBAR preconditioner for effective and high-throughput lossless data compression},
      booktitle = {Data Engineering (ICDE), 2012 IEEE 28th International Conference on},
      year = {2012},
      pages = {138--149}
    }
    
    Schendel, E., Pendse, S., Jenkins, J., Boyuka II, D., Gong, Z., Lakshminarasimhan, S., Liu, Q., Kolla, H., Chen, J., Klasky, S. & others ISOBAR hybrid compression-I/O interleaving for large-scale parallel I/O optimization 2012 Proceedings of the 21st international symposium on High-Performance Parallel and Distributed Computing, pp. 61-72  inproceedings  
    BibTeX:
    @inproceedings{schendel2012isobar,
      author = {Schendel, E.R. and Pendse, S.V. and Jenkins, J. and Boyuka II, D.A. and Gong, Z. and Lakshminarasimhan, S. and Liu, Q. and Kolla, H. and Chen, J. and Klasky, S. and others},
      title = {ISOBAR hybrid compression-I/O interleaving for large-scale parallel I/O optimization},
      booktitle = {Proceedings of the 21st international symposium on High-Performance Parallel and Distributed Computing},
      year = {2012},
      pages = {61--72}
    }
    
    Schendel, E.R., Harenberg, S., Tang, H., Vishwanath, V., Papka, M.E. & Samatova, N.F. A Generic High-Performance Method for Deinterleaving Scientific Data 2013 Euro-Par 2013 Parallel Processing, pp. 571-582  incollection  
    BibTeX:
    @incollection{schendel2013generic,
      author = {Schendel, Eric R. and Harenberg, Steve and Tang, Houjun and Vishwanath, Venkatram and Papka, Michael E. and Samatova, Nagiza F.},
      title = {A Generic High-Performance Method for Deinterleaving Scientific Data},
      booktitle = {Euro-Par 2013 Parallel Processing},
      publisher = {Springer},
      year = {2013},
      pages = {571--582}
    }
    
    Schmidt, W., Federrath, C. & Klessen, R. Is the Scaling of Supersonic Turbulence Universal? 2008 Physical Review Letters
    Vol. 101(19), pp. 194505 
    article DOI  
    BibTeX:
    @article{2008PhRvL.101s4505S,
      author = {Schmidt, W. and Federrath, C. and Klessen, R.},
      title = {Is the Scaling of Supersonic Turbulence Universal?},
      journal = {Physical Review Letters},
      year = {2008},
      volume = {101},
      number = {19},
      pages = {194505},
      doi = {http://dx.doi.org/10.1103/PhysRevLett.101.194505}
    }
    
    Schmidt, W., Kern, S.A.W., Federrath, C. & Klessen, R.S. Numerical and semi-analytic core mass distributions in supersonic isothermal turbulence 2010 Astronomy and Astrophysics
    Vol. 516, pp. A25 
    article DOI  
    BibTeX:
    @article{2010A&A...516A..25S,
      author = {Schmidt, W. and Kern, S.~A.~W. and Federrath, C. and Klessen, R.~S. },
      title = {Numerical and semi-analytic core mass distributions in supersonic isothermal turbulence},
      journal = {Astronomy and Astrophysics},
      year = {2010},
      volume = {516},
      pages = {A25},
      doi = {http://dx.doi.org/10.1051/0004-6361/200913904}
    }
    
    Scopatz, A., Fatenejad, M., Flocke, N., Gregori, G., Koenig, M., Lamb, D.Q., Lee, D., Meinecke, J., Ravasio, A., Tzeferacos, P., Weide, K. & Yurchak, R. FLASH hydrodynamic simulations of experiments to explore the generation of cosmological magnetic fields 2013 High Energy Density Physics
    Vol. 9(1), pp. 75 - 81 
    article DOI URL 
    BibTeX:
    @article{scopatz2012flash,
      author = {Scopatz, Anthony and Fatenejad, Milad and Flocke, Norbert and Gregori, Gianluca and Koenig, M. and Lamb, D. Q. and Lee, D. and Meinecke, J. and Ravasio, A. and Tzeferacos, P. and K. Weide and R. Yurchak},
      title = {FLASH hydrodynamic simulations of experiments to explore the generation of cosmological magnetic fields},
      journal = {High Energy Density Physics},
      year = {2013},
      volume = {9},
      number = {1},
      pages = {75 - 81},
      url = {http://www.sciencedirect.com/science/article/pii/S157418181200119X},
      doi = {http://dx.doi.org/10.1016/j.hedp.2012.10.003}
    }
    
    Seifried, D., Banerjee, R., Klessen, R., Duffin, D. & Pudritz, R. Magnetic fields during the early stages of massive star formation--I. Accretion and disc evolution 2011 Monthly Notices of the Royal Astronomical Society  article  
    BibTeX:
    @article{seifried2011magnetic,
      author = {Seifried, D. and Banerjee, R. and Klessen, RS and Duffin, D. and Pudritz, RE},
      title = {Magnetic fields during the early stages of massive star formation--I. Accretion and disc evolution},
      journal = {Monthly Notices of the Royal Astronomical Society},
      publisher = {Wiley Online Library},
      year = {2011}
    }
    
    Seifried, D., Pudritz, R., Banerjee, R., Duffin, D. & Klessen, R. Magnetic fields during the early stages of massive star formation--II. A generalized outflow criterion 2012 Monthly Notices of the Royal Astronomical Society  article  
    BibTeX:
    @article{seifried2012magnetic,
      author = {Seifried, D. and Pudritz, RE and Banerjee, R. and Duffin, D. and Klessen, RS},
      title = {Magnetic fields during the early stages of massive star formation--II. A generalized outflow criterion},
      journal = {Monthly Notices of the Royal Astronomical Society},
      publisher = {Wiley Online Library},
      year = {2012}
    }
    
    Seifried, D. Jü. Magnetic fields during the early phase of massive star formation 2013   article  
    BibTeX:
    @article{seifried2013magnetic,
      author = {Seifried, Daniel Jürgen},
      title = {Magnetic fields during the early phase of massive star formation},
      year = {2013}
    }
    
    Seitenzahl, I., Meakin, C., Lamb, D. & Truran, J. Initiation of the Detonation in the Gravitationally Confined Detonation Model of Type Ia Supernovae 2009 Astrophysical Journal
    Vol. 700, pp. 642-653 
    article  
    BibTeX:
    @article{Seitenzahl2009b,
      author = {Seitenzahl, I.R. and Meakin, C.A. and Lamb, D.Q. and Truran, J.W.},
      title = {Initiation of the Detonation in the Gravitationally Confined Detonation Model of Type Ia Supernovae},
      journal = {Astrophysical Journal},
      year = {2009},
      volume = {700},
      pages = {642--653}
    }
    
    Seitenzahl, I., Timmes, F., Marin-Laflèche, A., Brown, E., Magkotsios, G. & Truran, J. Proton-rich Nuclear Statistical Equilibrium 2008 The Astrophysical Journal Letters
    Vol. 685, pp. L129 
    article  
    BibTeX:
    @article{seitenzahl2008proton,
      author = {Seitenzahl, IR and Timmes, FX and Marin-Laflèche, A. and Brown, E. and Magkotsios, G. and Truran, J.},
      title = {Proton-rich Nuclear Statistical Equilibrium},
      journal = {The Astrophysical Journal Letters},
      publisher = {IOP Publishing},
      year = {2008},
      volume = {685},
      pages = {L129}
    }
    
    Seitenzahl, I., Townsley, D., Peng, F. & Truran, J. Nuclear statistical equilibrium for Type Ia supernova simulations 2009 Atomic Data and Nuclear Data Tables
    Vol. 95(1), pp. 96-114 
    article  
    BibTeX:
    @article{seitenzahl2009nuclear,
      author = {Seitenzahl, I.R. and Townsley, D.M. and Peng, F. and Truran, J.W.},
      title = {Nuclear statistical equilibrium for Type Ia supernova simulations},
      journal = {Atomic Data and Nuclear Data Tables},
      publisher = {Elsevier},
      year = {2009},
      volume = {95},
      number = {1},
      pages = {96--114}
    }
    
    Seitenzahl, I.R., Meakin, C.A., Townsley, D.M., Lamb, D.Q. & Truran, J.W. Spontaneous Initiation of Detonations in White Dwarf Environments: Determination of Critical Sizes 2009 The Astrophysical Journal
    Vol. 696, pp. 515-527 
    article DOI  
    BibTeX:
    @article{Seitenzahl2009,
      author = {Seitenzahl, I.~R. and Meakin, C.~A. and Townsley, D.~M. and Lamb, D.~Q. and Truran, J.~W.},
      title = {Spontaneous Initiation of Detonations in White Dwarf Environments: Determination of Critical Sizes},
      journal = {The Astrophysical Journal},
      year = {2009},
      volume = {696},
      pages = {515-527},
      doi = {http://dx.doi.org/10.1088/0004-637X/696/1/515}
    }
    
    Selwa, M. & Murawski, K. Modern Numerical codes of modeling of astrophysical plasma by multiprocessor computers 2006 Proceedings of Cracow Grid Workshop  inproceedings  
    BibTeX:
    @inproceedings{Selwa2006,
      author = {Selwa, M. and Murawski, K.},
      title = {Modern Numerical codes of modeling of astrophysical plasma by multiprocessor computers},
      booktitle = {Proceedings of Cracow Grid Workshop},
      publisher = {Academic Computer Centre CYFRONET AGH},
      year = {2006},
      note = {20-23 November 2005, Krakow, Poland}
    }
    
    Selwa, M. & Murawski, K. Small clusters MPI usage for solving MHD equations with the FLASH code 2004 Annales UMCS Informatica
    Vol. {AI 2}, pp. 3-1-308 
    article  
    BibTeX:
    @article{Selwa2004,
      author = {Selwa, M. and Murawski, K.},
      title = {Small clusters MPI usage for solving MHD equations with the FLASH code},
      journal = {Annales UMCS Informatica},
      year = {2004},
      volume = {AI 2},
      pages = {3-1--308}
    }
    
    Selwa, M. & Murawski, K. FLASH--a tool for surgery of solar plasma 2004 Annales UMCS Informatica, A
    Vol. 1, pp. 2 
    article  
    BibTeX:
    @article{Selwa2004e,
      author = {Selwa, M. and Murawski, K.},
      title = {FLASH--a tool for surgery of solar plasma},
      journal = {Annales UMCS Informatica, A},
      year = {2004},
      volume = {1},
      pages = {2}
    }
    
    Selwa, M., Murawski, K., Kowal, G., Nakariakov, V., Aschwanden, M., Oliver, R. & Ballester, J.L. 3D numerical simulations of impulsively generated MHD waves in solar coronal loops 2004
    Vol. SP-547Proceedings of 'SOHO 13 - Waves, Oscillations and Small-Scale Transient Events in the Solar Atmosphere: A Joint View from SOHO and TRACE'. 29 September - 3 October 2003, Palma de Mallorca, Balearic Islands, Spain (ESA SP-547, January 2004), pp. 495 
    inproceedings  
    BibTeX:
    @inproceedings{smknaob,
      author = {M. Selwa and K. Murawski and G. Kowal and V. Nakariakov and M. Aschwanden and R. Oliver and J. L. Ballester},
      title = {3D numerical simulations of impulsively generated MHD waves in solar coronal loops},
      booktitle = {Proceedings of 'SOHO 13 - Waves, Oscillations and Small-Scale Transient Events in the Solar Atmosphere: A Joint View from SOHO and TRACE'. 29 September - 3 October 2003, Palma de Mallorca, Balearic Islands, Spain (ESA SP-547, January 2004)},
      publisher = {ESA Publications},
      year = {2004},
      volume = {SP-547},
      pages = {495}
    }
    
    Selwa, M., Murawski, K. & Solanki, S.K. Excitation and Damping of Slow Magnetosonic Standing Waves in a Solar Coronal Loop 2004
    Vol. SP-575Proceedings of the SOHO 15 Workshop - Coronal Heating. 6-9 September 2004, St Andrews, Scotland UK, pp. 91 
    inproceedings  
    BibTeX:
    @inproceedings{sms04,
      author = {M. Selwa and K. Murawski and S. K. Solanki},
      title = {Excitation and Damping of Slow Magnetosonic Standing Waves in a Solar Coronal Loop},
      booktitle = {Proceedings of the SOHO 15 Workshop - Coronal Heating. 6-9 September 2004, St Andrews, Scotland UK},
      publisher = {ESA Publications},
      year = {2004},
      volume = {SP-575},
      pages = {91}
    }
    
    Selwa, M., Murawski, K. & Solanki, S.K. Excitation and damping of slow magnetosonic standing waves in a solar coronal loop 2005 A&A
    Vol. 436(2), pp. 701-709 
    article DOI URL 
    BibTeX:
    @article{sms05,
      author = {M. Selwa and K. Murawski and S. K. Solanki},
      title = {Excitation and damping of slow magnetosonic standing waves in a solar coronal loop},
      journal = {A&A},
      year = {2005},
      volume = {436},
      number = {2},
      pages = {701-709},
      url = {http://dx.doi.org/10.1051/0004-6361:20042319},
      doi = {http://dx.doi.org/10.1051/0004-6361:20042319}
    }
    
    Selwa, M. & Murawski, K. Numerical Simulations of Impulsively Generated MHD Waves in a Solar Coronal Loop 2004 Acta Astronomica
    Vol. 54, pp. 211-220 
    article  
    BibTeX:
    @article{Selwa2004a,
      author = {Selwa, M. and Murawski, K.},
      title = {Numerical Simulations of Impulsively Generated MHD Waves in a Solar Coronal Loop},
      journal = {Acta Astronomica},
      year = {2004},
      volume = {54},
      pages = {211-220}
    }
    
    Selwa, M. & Murawski, K. Numerical simulations of impulsively generated mass density perturbations in a solar coronal loop 2004 Astronomy and Astrophysics
    Vol. 425, pp. 719-724 
    article DOI  
    BibTeX:
    @article{Selwa2004b,
      author = {Selwa, M. and Murawski, K.},
      title = {Numerical simulations of impulsively generated mass density perturbations in a solar coronal loop},
      journal = {Astronomy and Astrophysics},
      year = {2004},
      volume = {425},
      pages = {719-724},
      doi = {http://dx.doi.org/10.1051/0004-6361:20040505}
    }
    
    Selwa, M., Murawski, K. & Kowal, G. Three-dimensional numerical simulations of impulsively generated MHD waves in solar coronal loops 2004 Astronomy and Astrophysics
    Vol. 422, pp. 1067-1072 
    article DOI  
    BibTeX:
    @article{Selwa2004c,
      author = {Selwa, M. and Murawski, K. and Kowal, G.},
      title = {Three-dimensional numerical simulations of impulsively generated MHD waves in solar coronal loops},
      journal = {Astronomy and Astrophysics},
      year = {2004},
      volume = {422},
      pages = {1067-1072},
      doi = {http://dx.doi.org/10.1051/0004-6361:20047112}
    }
    
    Selwa, M., Murawski, K., Kowal, G., Nakariakov, V., Aschwanden, M., Oliver, R. & Ballester, J.L. 3D Numerical Simulations of Impulsively Generated MHD Waves in Solar Coronal Loops 2004 ESA SP-547: SOHO 13 Waves, Oscillations and Small-Scale Transients Events in the Solar Atmosphere: Joint View from SOHO and TRACE, pp. 495-+  inproceedings  
    BibTeX:
    @inproceedings{Selwa2004d,
      author = {Selwa, M. and Murawski, K. and Kowal, G. and Nakariakov, V. and Aschwanden, M. and Oliver, R. and Ballester, J.~L.},
      title = {3D Numerical Simulations of Impulsively Generated MHD Waves in Solar Coronal Loops},
      booktitle = {ESA SP-547: SOHO 13 Waves, Oscillations and Small-Scale Transients Events in the Solar Atmosphere: Joint View from SOHO and TRACE},
      year = {2004},
      pages = {495-+}
    }
    
    Selwa, M., Murawski, K. & Solanki, S.K. Excitation and damping of slow magnetosonic standing waves in a solar coronal loop 2005 Astronomy and Astrophysics
    Vol. 436, pp. 701-709 
    article DOI  
    BibTeX:
    @article{Selwa2005,
      author = {Selwa, M. and Murawski, K. and Solanki, S.~K.},
      title = {Excitation and damping of slow magnetosonic standing waves in a solar coronal loop},
      journal = {Astronomy and Astrophysics},
      year = {2005},
      volume = {436},
      pages = {701-709},
      doi = {http://dx.doi.org/10.1051/0004-6361:20042319}
    }
    
    Settlemyer, B. A Study OF Client-Based Caching For Parallel I/O 2009 School: Clemson University  phdthesis  
    BibTeX:
    @phdthesis{settlemyer2009astudy,
      author = {Settlemyer, B.W.},
      title = {A Study OF Client-Based Caching For Parallel I/O},
      school = {Clemson University},
      year = {2009}
    }
    
    Shan, H., Antypas, K. & Shalf, J. Characterizing and predicting the I/O performance of HPC applications using a parameterized synthetic benchmark 2008 SC '08: Proceedings of the 2008 ACM/IEEE conference on Supercomputing, pp. 1-12  inproceedings  
    BibTeX:
    @inproceedings{Shan2008,
      author = {Shan, Hongzhang and Antypas, Katie and Shalf, John},
      title = {Characterizing and predicting the I/O performance of HPC applications using a parameterized synthetic benchmark},
      booktitle = {SC '08: Proceedings of the 2008 ACM/IEEE conference on Supercomputing},
      publisher = {IEEE Press},
      year = {2008},
      pages = {1--12}
    }
    
    Shelton, R., Kwak, K. & Henley, D. Modeling the X-Rays Resulting from High-velocity Clouds 2012 The Astrophysical Journal
    Vol. 751(2), pp. 120 
    article  
    BibTeX:
    @article{shelton2012modeling,
      author = {Shelton, R.L. and Kwak, K. and Henley, D.B.},
      title = {Modeling the X-Rays Resulting from High-velocity Clouds},
      journal = {The Astrophysical Journal},
      publisher = {IOP Publishing},
      year = {2012},
      volume = {751},
      number = {2},
      pages = {120}
    }
    
    Shen, K., Kasen, D., Weinberg, N., Bildsten, L. & Scannapieco, E. Thermonuclear. Ia supernovae from helium shell detonations: explosion models and observables 2010 The Astrophysical Journal
    Vol. 715, pp. 767 
    article  
    BibTeX:
    @article{shen2010thermonuclear,
      author = {Shen, K.J. and Kasen, D. and Weinberg, N.N. and Bildsten, L. and Scannapieco, E.},
      title = {Thermonuclear. Ia supernovae from helium shell detonations: explosion models and observables},
      journal = {The Astrophysical Journal},
      publisher = {IOP Publishing},
      year = {2010},
      volume = {715},
      pages = {767}
    }
    
    Shin, M.-S. & Ruszkowski, M. Ram pressure stripping in elliptical galaxies--I. The impact of the interstellar medium turbulence 2013 Monthly Notices of the Royal Astronomical Society
    Vol. 428(1), pp. 804-814 
    article  
    BibTeX:
    @article{shin2013ram,
      author = {Shin, Min-Su and Ruszkowski, Mateusz},
      title = {Ram pressure stripping in elliptical galaxies--I. The impact of the interstellar medium turbulence},
      journal = {Monthly Notices of the Royal Astronomical Society},
      publisher = {Oxford University Press},
      year = {2013},
      volume = {428},
      number = {1},
      pages = {804--814}
    }
    
    Sidorin, V. & Palouš, J. Shell-Like Structures in the ISM: Observation Versus Simulations 2009 Proceedings of the 18th Annual Conference of Doctoral Students,  inproceedings  
    BibTeX:
    @inproceedings{Sidorin2009,
      author = {Sidorin, V. and Palouš, J.},
      title = {Shell-Like Structures in the ISM: Observation Versus Simulations},
      booktitle = {Proceedings of the 18th Annual Conference of Doctoral Students,},
      publisher = {MATFYZPRESS},
      year = {2009}
    }
    
    Sigovan, C., Muelder, C., Ma, K., Cope, J., Iskra, K. & Ross, R. A Visual Network Analysis Method for Large Scale Parallel I/O Systems   article  
    BibTeX:
    @article{sigovanvisual,
      author = {Sigovan, C. and Muelder, C. and Ma, K.L. and Cope, J. and Iskra, K. and Ross, R.},
      title = {A Visual Network Analysis Method for Large Scale Parallel I/O Systems}
    }
    
    Simionescu, A., Roediger, E., Nulsen, P.E.J., Brüggen, M., Forman, W.R., Böhringer, H., Werner, N. & Finoguenov, A. The large-scale shock in the cluster of galaxies Hydra A 2009 Astronomy and Astrophysics
    Vol. 495, pp. 721-732 
    article DOI  
    BibTeX:
    @article{Simionescu2009,
      author = {Simionescu, A. and Roediger, E. and Nulsen, P.~E.~J. and Brüggen, M. and Forman, W.~R. and Böhringer, H. and Werner, N. and Finoguenov, A.},
      title = {The large-scale shock in the cluster of galaxies Hydra A},
      journal = {Astronomy and Astrophysics},
      year = {2009},
      volume = {495},
      pages = {721-732},
      note = {accepted for publication in A&A},
      doi = {http://dx.doi.org/10.1051/0004-6361:200811071}
    }
    
    Simon, T., Ward Jr, W. & Boss, A. Performance analysis of Intel multiprocessors using astrophysics simulations 2012 Concurrency and Computation: Practice and Experience
    Vol. 24(2), pp. 155-166 
    article  
    BibTeX:
    @article{simon2012performance,
      author = {Simon, T.A. and Ward Jr, W.A. and Boss, A.P.},
      title = {Performance analysis of Intel multiprocessors using astrophysics simulations},
      journal = {Concurrency and Computation: Practice and Experience},
      publisher = {Wiley Online Library},
      year = {2012},
      volume = {24},
      number = {2},
      pages = {155--166}
    }
    
    Skinner, D., Verdier, F., Anand, H., Carter, J., Durst, M. & Gerber, R. Parallel Scaling Characteristics of Selected NERSC User Project Codes 2005   techreport  
    BibTeX:
    @techreport{Skinner2005,
      author = {Skinner, D. and Verdier, F. and Anand, H. and Carter, J. and Durst, M. and Gerber, R.},
      title = {Parallel Scaling Characteristics of Selected NERSC User Project Codes},
      year = {2005}
    }
    
    Smith, C. Application of the Explicit Asymptotic Method to Nuclear Burning in Type Ia Supernova 2009   article  
    BibTeX:
    @article{smith2009application,
      author = {Smith, C.R.},
      title = {Application of the Explicit Asymptotic Method to Nuclear Burning in Type Ia Supernova},
      year = {2009}
    }
    
    Soker, N., Akashi, M., Gilkis, A., Hillel, S., Papish, O., Refaelovich, M. & Tsebrenko, D. The jet feedback mechanism (JFM): From supernovae to clusters of galaxies 2013 Astronomische Nachrichten
    Vol. 334(4-5), pp. 402-407 
    article  
    BibTeX:
    @article{soker2013jet,
      author = {Soker, Noam and Akashi, Muhammad and Gilkis, Avishai and Hillel, Shlomi and Papish, Oded and Refaelovich, Michael and Tsebrenko, Danny},
      title = {The jet feedback mechanism (JFM): From supernovae to clusters of galaxies},
      journal = {Astronomische Nachrichten},
      publisher = {Wiley Online Library},
      year = {2013},
      volume = {334},
      number = {4-5},
      pages = {402--407}
    }
    
    Sottile, M.J. A measurement and simulation methodology for parallel computing performance studies 2006   phdthesis  
    BibTeX:
    @phdthesis{Sottile2006,
      author = {Sottile, Matthew Joseph},
      title = {A measurement and simulation methodology for parallel computing performance studies},
      publisher = {University of New Mexico},
      year = {2006},
      note = {Adviser-David A. Bader}
    }
    
    Srivastava, A., Erdélyi, R., Murawski, K. & Kumar, P. Multiwavelength Observations of Supersonic Plasma Blob Triggered by Reconnection-Generated Velocity Pulse in AR10808 2012 Solar Physics, pp. 1-19  article  
    BibTeX:
    @article{srivastava2012multiwavelength,
      author = {Srivastava, AK and Erdélyi, R. and Murawski, K. and Kumar, P.},
      title = {Multiwavelength Observations of Supersonic Plasma Blob Triggered by Reconnection-Generated Velocity Pulse in AR10808},
      journal = {Solar Physics},
      publisher = {Springer},
      year = {2012},
      pages = {1--19}
    }
    
    Srivastava, A. & Murawski, K. Observations of Post-flare Plasma Dynamics during an M1.0 Flare in AR11093 by SDO/AIA 2012 The Astrophysical Journal
    Vol. 744, pp. 173 
    article  
    BibTeX:
    @article{sm12,
      author = {A. Srivastava and K. Murawski},
      title = {Observations of Post-flare Plasma Dynamics during an M1.0 Flare in AR11093 by SDO/AIA},
      journal = {The Astrophysical Journal},
      year = {2012},
      volume = {744},
      pages = {173}
    }
    
    Srivastava, A.K. & Murawski, K. Observations of a pulse driven cool polar jet by SDO/AIA 2011 Astronomy and Astrophysics
    Vol. 534(A62) 
    article  
    BibTeX:
    @article{sm11,
      author = {A. K. Srivastava and K. Murawski},
      title = {Observations of a pulse driven cool polar jet by SDO/AIA},
      journal = {Astronomy and Astrophysics},
      year = {2011},
      volume = {534},
      number = {A62}
    }
    
    Starczewski, S., Gawryszczak, A.J., Wunsch, R. & Rozyczka, M. Hot Jupiters and Central Cavities of Protoplanetary Disks 2007 Acta Astronomica
    Vol. 57, pp. 123-138 
    article  
    BibTeX:
    @article{Starczewski2007,
      author = {Starczewski, S. and Gawryszczak, A.~J. and Wunsch, R. and Rozyczka, M.},
      title = {Hot Jupiters and Central Cavities of Protoplanetary Disks},
      journal = {Acta Astronomica},
      year = {2007},
      volume = {57},
      pages = {123-138}
    }
    
    Storm, M., Jiang, S., Wertepny, D., Orban, C., Morrison, J., Willis, C., McCary, E., Balencourt, P., Snyder, J., Chowdhury, E., Bang, W., Gaul, E., Dyer, G., Ditmire, T., Freeman, R.R. & Akli, K. Fast neutron production from lithium converters and laser driven protons 2013 Physics of Plasmas
    Vol. 20(5), pp. 053106 
    article DOI URL 
    BibTeX:
    @article{storm:053106,
      author = {M. Storm and S. Jiang and D. Wertepny and C. Orban and J. Morrison and C. Willis and E. McCary and P. Balencourt and J. Snyder and E. Chowdhury and W. Bang and E. Gaul and G. Dyer and T. Ditmire and R. R. Freeman and K. Akli},
      title = {Fast neutron production from lithium converters and laser driven protons},
      journal = {Physics of Plasmas},
      publisher = {AIP},
      year = {2013},
      volume = {20},
      number = {5},
      pages = {053106},
      url = {http://link.aip.org/link/?PHP/20/053106/1},
      doi = {http://dx.doi.org/10.1063/1.4803648}
    }
    
    Stute, M. & Sahai, R. Investigating X-ray Emission from PPN and PN using numerical simulations 2006 IAU Symposium, pp. 519-520  inproceedings DOI  
    Abstract: he shaping of Pre-planetary nebulae (PPN) and Planetary Nebulae (PN) is believed to result from the interaction of a fast, collimated post-AGB wind (CFW) plowing into the slow, dense wind emitted during the AGB phase, followed by an isotropic tenuous wind during the PN phase (Sahai & Trauger 1998). The expanding shell which forms the PPN and later the PN is expected to produce extended X-ray emission due to the large speed of the fast wind and resulting high temperatures in the shocked gas. X-ray emission was only detected in 3 of 60 PNs observed with ROSAT, followed by a few more from CHANDRA and XMM (e.g. Guerrero et al. 2005). In the case of PPNs, there is so far only one confirmed X-ray detection (Sahai et al. 2003), although many have been observed with CHANDRA. The general problem of understanding the formation and shaping of PNs has been addressed analytically and numerically (see Balick & Frank 2002, and references therein). X-ray emission is one of the most direct probes of the fast wind and the interaction process which drives PN formation. However, this probe has not been fully exploited in previous modeling studies. Very recently, Akashi et al. (2006, hereafter ASB06) used analytical, self-similar, spherically symmetric models to address this problem. We are performing numerical simulations with the hydrodynamics code FLASH varying the basic parameters of the fast and slow wind over an extensive parameter grid and computing the X-ray emission as a function of these parameters and the time history of the fast wind.
    BibTeX:
    @inproceedings{Stute2006,
      author = {Stute, M. and Sahai, R.},
      title = {Investigating X-ray Emission from PPN and PN using numerical simulations},
      booktitle = {IAU Symposium},
      year = {2006},
      pages = {519-520},
      doi = {http://dx.doi.org/10.1017/S1743921306004030}
    }
    
    Stute, M. & Sahai, R. X-Ray Emission from Planetary Nebulae. I. Spherically Symmetric Numerical Simulations 2006 Astrophysical Journal
    Vol. 651, pp. 882-897 
    article DOI  
    BibTeX:
    @article{Stute2006a,
      author = {Stute, M. and Sahai, R.},
      title = {X-Ray Emission from Planetary Nebulae. I. Spherically Symmetric Numerical Simulations},
      journal = {Astrophysical Journal},
      year = {2006},
      volume = {651},
      pages = {882-897},
      doi = {http://dx.doi.org/10.1086/507986}
    }
    
    de Supinski, B.R., Alam, S., Bailey, D.H., Carrington, L., Daley, C., Dubey, A., Gamblin, T., Gunter, D., Hovland, P.D., Jagode, H., Karavanic, K., Marin, G., Mellor-Crummey, J., Moore, S., Norris, B., Oliker, L., Olschanowsky, C., Roth, P.C., Schulz, M., Shende, S., Snavely, A., Spear, W., Tikir, M., Vetter, J., Worley, P. & Wright, N. Modeling the Office of Science ten year facilities plan: The PERI Architecture Tiger Team 2009 Journal of Physics: Conference Series
    Vol. 180(1), pp. 012039 
    article URL 
    Abstract: The Performance Engineering Institute (PERI) originally proposed a tiger team activity as a mechanism to target significant effort optimizing key Office of Science applications, a model that was successfully realized with the assistance of two JOULE metric teams. However, the Office of Science requested a new focus beginning in 2008: assistance in forming its ten year facilities plan. To meet this request, PERI formed the Architecture Tiger Team, which is modeling the performance of key science applications on future architectures, with S3D, FLASH and GTC chosen as the first application targets. In this activity, we have measured the performance of these applications on current systems in order to understand their baseline performance and to ensure that our modeling activity focuses on the right versions and inputs of the applications. We have applied a variety of modeling techniques to anticipate the performance of these applications on a range of anticipated systems. While our initial findings predict that Office of Science applications will continue to perform well on future machines from major hardware vendors, we have also encountered several areas in which we must extend our modeling techniques in order to fulfill our mission accurately and completely. In addition, we anticipate that models of a wider range of applications will reveal critical differences between expected future systems, thus providing guidance for future Office of Science procurement decisions, and will enable DOE applications to exploit machines in future facilities fully.
    BibTeX:
    @article{Supinski2009,
      author = {Bronis R de Supinski and Sadaf Alam and David H Bailey and Laura Carrington and Chris Daley and Anshu Dubey and Todd Gamblin and Dan Gunter and Paul D Hovland and Heike Jagode and Karen Karavanic and Gabriel Marin and John Mellor-Crummey and Shirley Moore and Boyana Norris and Leonid Oliker and Catherine Olschanowsky and Philip C Roth and Martin Schulz and Sameer Shende and Allan Snavely and Wyatt Spear and Mustafa Tikir and Jeff Vetter and Pat Worley and Nicholas Wright},
      title = {Modeling the Office of Science ten year facilities plan: The PERI Architecture Tiger Team},
      journal = {Journal of Physics: Conference Series},
      year = {2009},
      volume = {180},
      number = {1},
      pages = {012039},
      url = {http://stacks.iop.org/1742-6596/180/i=1/a=012039}
    }
    
    Sur, S., Federrath, C., Schleicher, D.R.G., Banerjee, R. & Klessen, R.S. Magnetic field amplification during gravitational collapse--influence of turbulence, rotation and gravitational compression 2012 Monthly Notices of the Royal Astronomical Society  article  
    BibTeX:
    @article{sur2012magnetic,
      author = {Sur, S. and Federrath, C. and Schleicher, D. R. G. and Banerjee, R. and Klessen, R. S.},
      title = {Magnetic field amplification during gravitational collapse--influence of turbulence, rotation and gravitational compression},
      journal = {Monthly Notices of the Royal Astronomical Society},
      publisher = {Wiley Online Library},
      year = {2012}
    }
    
    Sur, S., Schleicher, D.R.G., Banerjee, R., Federrath, C. & Klessen, R.S. The Generation of Strong Magnetic Fields During the Formation of the First Stars 2010 The Astrophysical Journal Letters
    Vol. 721, pp. L134-L138 
    article DOI  
    BibTeX:
    @article{2010ApJ...721L.134S,
      author = {Sur, S. and Schleicher, D.~R.~G. and Banerjee, R. and Federrath, C. and Klessen, R.~S.},
      title = {The Generation of Strong Magnetic Fields During the Formation of the First Stars},
      journal = {The Astrophysical Journal Letters},
      year = {2010},
      volume = {721},
      pages = {L134-L138},
      doi = {http://dx.doi.org/10.1088/2041-8205/721/2/L134}
    }
    
    Sutter, P.M. & Ricker, P.M. A First Estimate of Radio Halo Statistics from Large-scale Cosmological Simulation 2012 The Astrophysical Journal
    Vol. 759(2), pp. 92 
    article  
    BibTeX:
    @article{sutter2012first,
      author = {Sutter, P. M. and Ricker, P. M.},
      title = {A First Estimate of Radio Halo Statistics from Large-scale Cosmological Simulation},
      journal = {The Astrophysical Journal},
      publisher = {IOP Publishing},
      year = {2012},
      volume = {759},
      number = {2},
      pages = {92}
    }
    
    Sutter, P.M. & Ricker, P.M. Examining Subgrid Models of Supermassive Black Holes in Cosmological Simulation 2010 Astrophysical Journal
    Vol. 723, pp. 1308-1318 
    article DOI  
    BibTeX:
    @article{sutter_examining_2010,
      author = {Sutter, P. M. and Ricker, P. M.},
      title = {Examining Subgrid Models of Supermassive Black Holes in Cosmological Simulation},
      journal = {Astrophysical Journal},
      year = {2010},
      volume = {723},
      pages = {1308--1318},
      doi = {http://dx.doi.org/10.1088/0004-637X/723/2/1308}
    }
    
    Sutter, P.M. & Ricker, P.M. Structure and Evolution of Zel'dovich Pancakes as Probes of Dark Energy Models 2008 Astrophysical Journal
    Vol. 674, pp. 1-10 
    article DOI  
    BibTeX:
    @article{Sutter2008a,
      author = {Sutter, P.~M. and Ricker, P.~M.},
      title = {Structure and Evolution of Zel'dovich Pancakes as Probes of Dark Energy Models},
      journal = {Astrophysical Journal},
      year = {2008},
      volume = {674},
      pages = {1-10},
      doi = {http://dx.doi.org/10.1086/523933}
    }
    
    Sutter, P.M. & Ricker, P.M. Detecting Dark Matter-Dark Energy Coupling with the Halo Mass Function 2008 The Astrophysical Journal
    Vol. 687, pp. 7-11 
    article URL 
    Abstract: We use high-resolution simulations of large-scale structure formation to analyze the effects of interacting dark matter and dark energy on the evolution of the halo mass function. Using a ??2 likelihood analysis, we find significant differences in the mass function between models of coupled dark matter-dark energy and standard concordance cosmology (??CDM) out to redshift z=1.5. We also find a preliminary indication that the Dark Energy Survey (DES) should be able to distinguish these models from ??CDM within its mass and redshift constraints. While we can distinguish the effects of these models from ??CDM cosmologies with different fundamental parameters, DES will require independent measurements of ??8 to confirm these effects.
    BibTeX:
    @article{sutter_detecting_2008,
      author = {Sutter, P. M. and Ricker, P. M.},
      title = {Detecting Dark Matter-Dark Energy Coupling with the Halo Mass Function},
      journal = {The Astrophysical Journal},
      year = {2008},
      volume = {687},
      pages = {7--11},
      url = {http://adsabs.harvard.edu/abs/2008ApJ...687....7S}
    }
    
    Sutter, P.M., Ricker, P.M. & Yang, H.-Y.. Cluster Magnetic Fields from Active Galactic Nuclei 2009
    Vol. 1201American Institute of Physics Conference Series, pp. 346-349 
    inproceedings DOI  
    BibTeX:
    @inproceedings{sutter_cluster_2009,
      author = {Sutter, P. M. and Ricker, P. M. and Yang, H.-Y.},
      title = {Cluster Magnetic Fields from Active Galactic Nuclei},
      booktitle = {American Institute of Physics Conference Series},
      year = {2009},
      volume = {1201},
      pages = {346--349},
      doi = {http://dx.doi.org/10.1063/1.3293073}
    }
    
    Sutter, P.M., Yang, H.-Y.K., Ricker, P.M., Foreman, G. & Pugmire, D. An examination of magnetized outflows from active galactic nuclei in galaxy clusters 2012 Monthly Notices of the RAS
    Vol. 419, pp. 2293-2314 
    article DOI  
    BibTeX:
    @article{2012MNRAS.419.2293S,
      author = {Sutter, P.~M. and Yang, H.-Y.~K. and Ricker, P.~M. and Foreman, G. and Pugmire, D.},
      title = {An examination of magnetized outflows from active galactic nuclei in galaxy clusters},
      journal = {Monthly Notices of the RAS},
      year = {2012},
      volume = {419},
      pages = {2293-2314},
      doi = {http://dx.doi.org/10.1111/j.1365-2966.2011.19875.x}
    }
    
    Swesty, F. & Myra, E. A numerical algorithm for modeling multigroup neutrino-radiation hydrodynamics in two spatial dimensions 2009 The Astrophysical Journal Supplement Series
    Vol. 181, pp. 1 
    article  
    BibTeX:
    @article{swesty2009numerical,
      author = {Swesty, F.D. and Myra, E.S.},
      title = {A numerical algorithm for modeling multigroup neutrino-radiation hydrodynamics in two spatial dimensions},
      journal = {The Astrophysical Journal Supplement Series},
      publisher = {IOP Publishing},
      year = {2009},
      volume = {181},
      pages = {1}
    }
    
    Taam, R.E. & Ricker, P.M. Common Envelope Evolution 2010 New Astronomy Reviews
    Vol. 54, pp. 65-71 
    article DOI  
    BibTeX:
    @article{taam_common_2010,
      author = {Taam, R. E. and Ricker, P. M.},
      title = {Common Envelope Evolution},
      journal = {New Astronomy Reviews},
      year = {2010},
      volume = {54},
      pages = {65--71},
      doi = {http://dx.doi.org/10.1016/j.newar.2010.09.027}
    }
    
    Taam, R.E. & Ricker, P.M. Common Envelope Evolution 2006 A life with stars: A meeting in honor of Ed van den Heuvel  inproceedings  
    BibTeX:
    @inproceedings{Taam2006,
      author = {Taam, R.~E. and Ricker, P.~M.},
      title = {Common Envelope Evolution},
      booktitle = {A life with stars: A meeting in honor of Ed van den Heuvel},
      year = {2006},
      note = {August 22-26, 2005}
    }
    
    Tallent, N., Mellor-Crummey, J. & Fagan, M. Binary analysis for measurement and attribution of program performance 2009 In Proceedings of the ACM SIGPLAN Symposium on Program Language Design and Implementation (PLDI)  inproceedings URL 
    BibTeX:
    @inproceedings{Tallent2009,
      author = {Tallent, N.R. and Mellor-Crummey, J.M. and Fagan, M.W.},
      title = {Binary analysis for measurement and attribution of program performance},
      booktitle = {In Proceedings of the ACM SIGPLAN Symposium on Program Language Design and Implementation (PLDI)},
      publisher = {ACM New York, NY, USA},
      year = {2009},
      url = {http://www.cs.rice.edu/~johnmc/papers/hpctoolkit-pldi-2009.pdf}
    }
    
    Tang, S. & Wang, Q. Missing-iron problem and Type Ia supernova enrichment of hot gas in galactic spheroids 2010 Monthly Notices of the Royal Astronomical Society
    Vol. 408(2), pp. 1011-1019 
    article  
    BibTeX:
    @article{tang2010missing,
      author = {Tang, S. and Wang, Q.D.},
      title = {Missing-iron problem and Type Ia supernova enrichment of hot gas in galactic spheroids},
      journal = {Monthly Notices of the Royal Astronomical Society},
      publisher = {Wiley Online Library},
      year = {2010},
      volume = {408},
      number = {2},
      pages = {1011--1019}
    }
    
    Tang, S., Wang, Q., Lu, Y. & Mo, H. Feedback from galactic stellar bulges and hot gaseous haloes of galaxies 2009 Monthly Notices of the Royal Astronomical Society
    Vol. 392(1), pp. 77-90 
    article  
    BibTeX:
    @article{tang2009feedback,
      author = {Tang, S. and Wang, Q.D. and Lu, Y. and Mo, HJ},
      title = {Feedback from galactic stellar bulges and hot gaseous haloes of galaxies},
      journal = {Monthly Notices of the Royal Astronomical Society},
      publisher = {Wiley Online Library},
      year = {2009},
      volume = {392},
      number = {1},
      pages = {77--90}
    }
    
    Tang, S. Galactic bulge feedback and its impact on galaxy evolution 2009 School: University of Massachusetts Amherst  phdthesis  
    BibTeX:
    @phdthesis{Tang2009a,
      author = {Tang, S.},
      title = {Galactic bulge feedback and its impact on galaxy evolution},
      school = {University of Massachusetts Amherst},
      year = {2009}
    }
    
    Tang, S. & Wang, Q.D. Supernova Blast Waves in Low-Density Hot Media: A Mechanism for Spatially Distributed Heating 2005 Astrophysical Journal
    Vol. 628, pp. 205-209 
    article DOI  
    BibTeX:
    @article{Tang2005,
      author = {Tang, S. and Wang, Q. D.},
      title = {Supernova Blast Waves in Low-Density Hot Media: A Mechanism for Spatially Distributed Heating},
      journal = {Astrophysical Journal},
      year = {2005},
      volume = {628},
      pages = {205-209},
      doi = {http://dx.doi.org/10.1086/430875}
    }
    
    Tang, S., Wang, Q.D., Mac Low, M.-M. & Joung, M.R. Type Ia supernova-driven Galactic bulge wind 2009 Monthly Notices of the RAS
    Vol. 398, pp. 1468-1482 
    article DOI  
    BibTeX:
    @article{2009MNRAS.398.1468T,
      author = {Tang, S. and Wang, Q.~D. and Mac Low, M.-M. and Joung, M.~R. },
      title = {Type Ia supernova-driven Galactic bulge wind},
      journal = {Monthly Notices of the RAS},
      year = {2009},
      volume = {398},
      pages = {1468-1482},
      doi = {http://dx.doi.org/10.1111/j.1365-2966.2009.15206.x}
    }
    
    Tasker, E., Brunino, R., Mitchell, N., Michielsen, D., Hopton, S., Pearce, F., Bryan, G. & Theuns, T. A test suite for quantitative comparison of hydrodynamic codes in astrophysics 2008 Monthly Notices of the Royal Astronomical Society
    Vol. 390(3), pp. 1267-1281 
    article  
    BibTeX:
    @article{Tasker2008,
      author = {Tasker, E.J. and Brunino, R. and Mitchell, N.L. and Michielsen, D. and Hopton, S. and Pearce, F.R. and Bryan, G.L. and Theuns, T.},
      title = {A test suite for quantitative comparison of hydrodynamic codes in astrophysics},
      journal = {Monthly Notices of the Royal Astronomical Society},
      publisher = {Blackwell Publishing},
      year = {2008},
      volume = {390},
      number = {3},
      pages = {1267--1281}
    }
    
    Tchekhovskoy, A., McKinney, J.C. & Narayan, R. WHAM: a WENO-based general relativistic numerical scheme - I. Hydrodynamics 2007 Monthly Notices of the RAS
    Vol. 379, pp. 469-497 
    article DOI  
    BibTeX:
    @article{Tchekhovskoy2007,
      author = {Tchekhovskoy, A. and McKinney, J.~C. and Narayan, R.},
      title = {WHAM: a WENO-based general relativistic numerical scheme - I. Hydrodynamics},
      journal = {Monthly Notices of the RAS},
      year = {2007},
      volume = {379},
      pages = {469-497},
      doi = {http://dx.doi.org/10.1111/j.1365-2966.2007.11876.x}
    }
    
    Timmes, F., Brown, E. & Truran, J. On Variations in the Peak Luminosities of Type la Supernovae 2004 Cosmic explosions in Three Dimensions, pp. p. 179  inproceedings  
    BibTeX:
    @inproceedings{Timmes2004,
      author = {Timmes, FX and Brown, EF and Truran, JW},
      title = {On Variations in the Peak Luminosities of Type la Supernovae},
      booktitle = {Cosmic explosions in Three Dimensions},
      publisher = {Cambridge University Press},
      year = {2004},
      pages = {p. 179}
    }
    
    Timmes, F.X., Zingale, M., Olson, K., Fryxell, B., Ricker, P., Calder, A.C., Dursi, L.J., Tufo, H., MacNeice, P., Truran, J.W. & Rosner, R. On the Cellular Structure of Carbon Detonations 2000 Astrophysical Journal
    Vol. 543, pp. 938-954 
    article DOI  
    BibTeX:
    @article{Timmes2000,
      author = {Timmes, F.~X. and Zingale, M. and Olson, K. and Fryxell, B. and Ricker, P. and Calder, A.~C. and Dursi, L.~J. and Tufo, H. and MacNeice, P. and Truran, J.~W. and Rosner, R.},
      title = {On the Cellular Structure of Carbon Detonations},
      journal = {Astrophysical Journal},
      year = {2000},
      volume = {543},
      pages = {938-954},
      doi = {http://dx.doi.org/10.1086/317135}
    }
    
    Tolentino, M.E. Managing Memory for Power, Performance, and Thermal Efficiency 2009 School: Virginia Polytechnic Institute and State University  phdthesis  
    BibTeX:
    @phdthesis{Tolentino2009,
      author = {Tolentino, Matthew Edward},
      title = {Managing Memory for Power, Performance, and Thermal Efficiency},
      school = {Virginia Polytechnic Institute and State University},
      year = {2009}
    }
    
    Tolentino, M.E., Turner, J. & Cameron, K.W. Memory-miser: a performance-constrained runtime system for power-scalable clusters 2007 CF '07: Proceedings of the 4th international conference on Computing frontiers, pp. 237-246  inproceedings DOI  
    BibTeX:
    @inproceedings{Tolentino2007,
      author = {Matthew E. Tolentino and Joseph Turner and Kirk W. Cameron},
      title = {Memory-miser: a performance-constrained runtime system for power-scalable clusters},
      booktitle = {CF '07: Proceedings of the 4th international conference on Computing frontiers},
      publisher = {ACM Press},
      year = {2007},
      pages = {237--246},
      doi = {http://doi.acm.org/10.1145/1242531.1242566}
    }
    
    Tortora, C., Antonuccio-Delogu, V., Kaviraj, S., Silk, J., Romeo, A.D. & Becciani, U. AGN jet-induced feedback in galaxies - II. Galaxy colours from a multicloud simulation 2009 Monthly Notices of the Royal Astronomical Society
    Vol. 396, pp. 61-77 
    article DOI  
    BibTeX:
    @article{Tortora2009,
      author = {Tortora, C. and Antonuccio-Delogu, V. and Kaviraj, S. and Silk, J. and Romeo, A.~D. and Becciani, U.},
      title = {AGN jet-induced feedback in galaxies - II. Galaxy colours from a multicloud simulation},
      journal = {Monthly Notices of the Royal Astronomical Society},
      year = {2009},
      volume = {396},
      pages = {61-77},
      doi = {http://dx.doi.org/10.1111/j.1365-2966.2009.14718.x}
    }
    
    Townsley, D.M., Bair, R.A., Dubey, A., Fisher, R.T., Hearn, N.C., Lamb, D.Q. & Riley, K.M. Large-scale simulations of buoyancy-driven turbulent nuclear burning 2008 Journal of Physics Conference Series
    Vol. 125(1), pp. 012009-+ 
    article DOI  
    BibTeX:
    @article{2008JPhCS.125a2009T,
      author = {Townsley, D.~M. and Bair, R.~A. and Dubey, A. and Fisher, R.~T. and Hearn, N.~C. and Lamb, D.~Q. and Riley, K.~M.},
      title = {Large-scale simulations of buoyancy-driven turbulent nuclear burning},
      journal = {Journal of Physics Conference Series},
      year = {2008},
      volume = {125},
      number = {1},
      pages = {012009-+},
      doi = {http://dx.doi.org/10.1088/1742-6596/125/1/012009}
    }
    
    Townsley, D.M., Calder, A.C., Asida, S., Seitenzahl, I.R., Peng, F., Vladimirova, N., Lamb, D.Q. & Truran, J.W. Flame Evolution During Type Ia Supernovae and the Deflagration Phase in the Gravitationally Confined Detonation Scenario 2007 Astrophysical Journal
    Vol. 668, pp. 1118+ 
    article  
    BibTeX:
    @article{Townsley2007a,
      author = {Townsley, D. M. and Calder, A. C. and Asida, S. and Seitenzahl, I. R. and Peng, F. and Vladimirova, N. and Lamb, D. Q. and Truran, J. W.},
      title = {Flame Evolution During Type Ia Supernovae and the Deflagration Phase in the Gravitationally Confined Detonation Scenario},
      journal = {Astrophysical Journal},
      year = {2007},
      volume = {668},
      pages = {1118+}
    }
    
    Townsley, D.M., Jackson, A.P., Calder, A.C., Chamulak, D.A., Brown, E.F. & Timmes, F.X. Evaluating Systematic Dependencies of Type Ia Supernovae: The Influence of Progenitor ^22Ne Content on Dynamics 2009 The Astrophysical Journal
    Vol. 701(2), pp. 1582-1604 
    article URL 
    Abstract: We present a theoretical framework for formal study of systematic effects in supernovae Type Ia (SNe Ia) that utilizes two-dimensional simulations to implement a form of the deflagration-detonation transition (DDT) explosion scenario. The framework is developed from a randomized initial condition that leads to a sample of simulated SNe Ia whose 56Ni masses have a similar average and range to those observed, and have many other modestly realistic features such as the velocity extent of intermediate-mass elements. The intended purpose is to enable statistically well defined studies of both physical and theoretical parameters of the SNe Ia explosion simulation. We present here a thorough description of the outcome of the SNe Ia explosions produced by our current simulations. A first application of this framework is utilized to study the dependence of the SNe Ia on the 22Ne content, which is known to be directly influenced by the progenitor stellar population's metallicity. Our study is very specifically tailored to measure how the 22Ne content influences the competition between the rise of plumes of burned material and the expansion of the star before these plumes reach DDT conditions. This influence arises from the dependence of the energy release, progenitor structure, and laminar flame speed on 22Ne content. For this study, we explore these three effects for a fixed carbon content and DDT density. By setting the density at which nucleosynthesis takes place during the detonation phase of the explosion, the competition between plume rise and stellar expansion controls the amount of material in nuclear statistical equilibrium (NSE) and therefore 56Ni produced. Of particular interest is how this influence of 22Ne content compares to the direct modification of the 56Ni mass via the inherent neutron excess as discussed by Timmes et al. Although the outcome following from any particular ignition condition can change dramatically with 22Ne content, with a sample of 20 ignition conditions we find that the systematic change in the expansion of the star prior to detonation is not large enough to compete with the dependence discussed by Timmes et al. In fact, our results show no statistically significant dependence of the predetonation expansion on 22Ne content, pointing to the morphology of the ignition condition as being the dominant dynamical driver of the 56Ni yield of the explosion. However, variations in the DDT density, which were specifically excluded here, are also expected to be important and to depend systematically on 22Ne content.
    BibTeX:
    @article{Townsley2009,
      author = {Townsley, D. M. and Jackson, A. P. and Calder, A. C. and Chamulak, D. A. and Brown, E. F. and Timmes, F. X.},
      title = {Evaluating Systematic Dependencies of Type Ia Supernovae: The Influence of Progenitor ^22Ne Content on Dynamics},
      journal = {The Astrophysical Journal},
      year = {2009},
      volume = {701},
      number = {2},
      pages = {1582--1604},
      url = {http://iopscience.iop.org/0004-637X/701/2/1582}
    }
    
    Townsley, D.M., Moore, K. & Bildsten, L. Laterally Propagating Detonations in Thin Helium Layers on Accreting White Dwarfs 2012 apj
    Vol. 755, pp. 4 
    article DOI  
    BibTeX:
    @article{2012ApJ...755....4T,
      author = {Townsley, D.~M. and Moore, K. and Bildsten, L.},
      title = {Laterally Propagating Detonations in Thin Helium Layers on Accreting White Dwarfs},
      journal = {apj},
      year = {2012},
      volume = {755},
      pages = {4},
      doi = {http://dx.doi.org/10.1088/0004-637X/755/1/4}
    }
    
    Trac, H. & Pen, U.-L. Out-of-core hydrodynamic simulations for cosmological applications 2006 New Astronomy
    Vol. 11, pp. 273-286 
    article DOI  
    BibTeX:
    @article{Trac2006,
      author = {Trac, H. and Pen, U.-L.},
      title = {Out-of-core hydrodynamic simulations for cosmological applications},
      journal = {New Astronomy},
      year = {2006},
      volume = {11},
      pages = {273-286},
      doi = {http://dx.doi.org/10.1016/j.newast.2005.08.003}
    }
    
    Trebon, N. DEADLINE-BASED GRID RESOURCE SELECTION FOR URGENT COMPUTING 2008 School: UNIVERSITY OF CHICAGO  phdthesis  
    BibTeX:
    @phdthesis{Trebon2008a,
      author = {Trebon, N.},
      title = {DEADLINE-BASED GRID RESOURCE SELECTION FOR URGENT COMPUTING},
      school = {UNIVERSITY OF CHICAGO},
      year = {2008}
    }
    
    Trebon, N. & Beckman, P. Empirical-based probabilistic upper bounds for urgent computing applications 2008 Proceedings of the 2008 IEEE International Conference on Cluster Computing (Cluster 2008)  conference  
    BibTeX:
    @conference{Trebon2008,
      author = {Trebon, N. and Beckman, P.},
      title = {Empirical-based probabilistic upper bounds for urgent computing applications},
      booktitle = {Proceedings of the 2008 IEEE International Conference on Cluster Computing (Cluster 2008)},
      year = {2008}
    }
    
    Troja, E., Bocchino, F., Miceli, M. & Reale, F. XMM-Newton observations of the supernova remnant IC 443. II. Evidence of stellar ejecta in the inner regions 2008 Astronomy and Astrophysics
    Vol. 485, pp. 777-785 
    article DOI  
    BibTeX:
    @article{2008A&A...485..777T,
      author = {Troja, E. and Bocchino, F. and Miceli, M. and Reale, F. },
      title = {XMM-Newton observations of the supernova remnant IC 443. II. Evidence of stellar ejecta in the inner regions},
      journal = {Astronomy and Astrophysics},
      year = {2008},
      volume = {485},
      pages = {777-785},
      doi = {http://dx.doi.org/10.1051/0004-6361:20079123}
    }
    
    Truran, J., Calder, A., Plewa, T., Vladimirova, N. & Lamb, D. Deflagrations Evolved from Off-Center Ignition 2004 Proceeding's of the 12th Ringberg Workshop on Nuclear Astrophysics, pp. 96-100  inproceedings  
    BibTeX:
    @inproceedings{Truran2004,
      author = {Truran, JW and Calder, AC and Plewa, T. and Vladimirova, N. and Lamb, DQ},
      title = {Deflagrations Evolved from Off-Center Ignition},
      booktitle = {Proceeding's of the 12th Ringberg Workshop on Nuclear Astrophysics},
      publisher = {Garching: Max-Planck-Institut fuer Astrophysik},
      year = {2004},
      pages = {96--100}
    }
    
    Truran, J. Supernova Nucleosynthesis and Constraints on the First Stars 2006 Inflating Horizons of Particle Astrophysics and Cosmology, Proceedings of Yamada Conference LIX, pp. 13-19  inproceedings  
    BibTeX:
    @inproceedings{Truran2006,
      author = {Truran, J.W.},
      title = {Supernova Nucleosynthesis and Constraints on the First Stars},
      booktitle = {Inflating Horizons of Particle Astrophysics and Cosmology, Proceedings of Yamada Conference LIX},
      publisher = {Tokyo: Yamada Science Foundation and Universal Academic Press, Inc.},
      year = {2006},
      pages = { 13-19}
    }
    
    Truran, J. Supernova Explosions, Nucleosynthesis, and Cosmic Chemical Evolution 2006
    Vol. 848Proceedings of the 7th International Conference of the Hellenic Astronomical Society, AIP Conference Proceedings, pp. 281-290 
    inproceedings  
    BibTeX:
    @inproceedings{Truran2006a,
      author = {Truran, J.W.},
      title = {Supernova Explosions, Nucleosynthesis, and Cosmic Chemical Evolution},
      booktitle = {Proceedings of the 7th International Conference of the Hellenic Astronomical Society, AIP Conference Proceedings},
      year = {2006},
      volume = {848},
      pages = {281-290}
    }
    
    Truran, J.W., Alexakis, A., Calder, A.C., Dursi, L.J., Zingale, M., Fryxell, B., Ricker, P., Timmes, F.X., Olson, K. & Rosner, R. Mixing by wave breaking at the surface of a white dwarf 2002 Nuclear Astrophysics, pp. 186-190  inproceedings  
    BibTeX:
    @inproceedings{Truran2002,
      author = {Truran, J.~W. and Alexakis, A. and Calder, A.~C. and Dursi, L.~J. and Zingale, M. and Fryxell, B. and Ricker, P. and Timmes, F.~X. and Olson, K. and Rosner, R.},
      title = {Mixing by wave breaking at the surface of a white dwarf},
      booktitle = {Nuclear Astrophysics},
      year = {2002},
      pages = {186-190}
    }
    
    Truran, J.W., Calder, A.C., Townsley, D.M., Seitenzahl, I.R., Peng, F., Vladimirova, N., Lamb, D.Q. & Brown, E.F. Type Ia Supernovae: Energetics, Neutronization and Nucleosynthesis 2007
    Vol. 924The Multicolored Landscape of Compact Objects and Their Explosive Origins, pp. 203-209 
    inproceedings DOI  
    BibTeX:
    @inproceedings{Truran2007,
      author = {Truran, J.~W. and Calder, A.~C. and Townsley, D.~M. and Seitenzahl, I.~R. and Peng, F. and Vladimirova, N. and Lamb, D.~Q. and Brown, E.~F.},
      title = {Type Ia Supernovae: Energetics, Neutronization and Nucleosynthesis},
      booktitle = {The Multicolored Landscape of Compact Objects and Their Explosive Origins},
      year = {2007},
      volume = {924},
      pages = {203-209},
      doi = {http://dx.doi.org/10.1063/1.2774860}
    }
    
    Tsebrenko, D., Akashi, M. & Soker, N. Numerical simulations of wind--equatorial gas interaction in $ eta $ Carinae 2013 Monthly Notices of the Royal Astronomical Society
    Vol. 429(1), pp. 294-301 
    article  
    BibTeX:
    @article{tsebrenko2013numerical,
      author = {Tsebrenko, Danny and Akashi, Muhammad and Soker, Noam},
      title = {Numerical simulations of wind--equatorial gas interaction in $ eta $ Carinae},
      journal = {Monthly Notices of the Royal Astronomical Society},
      publisher = {Oxford University Press},
      year = {2013},
      volume = {429},
      number = {1},
      pages = {294--301}
    }
    
    Tsebrenko, D. & Soker, N. Type Ia Supernovae inside Planetary Nebulae: Shaping by Jets 2013 arXiv preprint arXiv:1305.1845  article  
    BibTeX:
    @article{tsebrenko2013type,
      author = {Tsebrenko, Danny and Soker, Noam},
      title = {Type Ia Supernovae inside Planetary Nebulae: Shaping by Jets},
      journal = {arXiv preprint arXiv:1305.1845},
      year = {2013}
    }
    
    Turk, M., Smith, B., Oishi, J., Skory, S., Skillman, S., Abel, T. & Norman, M. yt: A Multi-Code Analysis Toolkit for Astrophysical Simulation Data 2011 The Astrophysical Journal Supplement Series
    Vol. 192, pp. 9 
    article  
    BibTeX:
    @article{turk2011yt,
      author = {Turk, M.J. and Smith, B.D. and Oishi, J.S. and Skory, S. and Skillman, S.W. and Abel, T. and Norman, M.L.},
      title = {yt: A Multi-Code Analysis Toolkit for Astrophysical Simulation Data},
      journal = {The Astrophysical Journal Supplement Series},
      publisher = {IOP Publishing},
      year = {2011},
      volume = {192},
      pages = {9}
    }
    
    Tzeferacos, P., Fatenejad, M., Flocke, N., Gregori, G., Lamb, D.Q., Lee, D., Meinecke, J., Scopatz, A. & Weide, K. FLASH magnetohydrodynamic simulations of shock-generated magnetic field experiments 2012 High Energy Density Physics
    Vol. 8(4), pp. 322 - 328 
    article DOI URL 
    BibTeX:
    @article{Tzeferacos2012322,
      author = {P. Tzeferacos and M. Fatenejad and N. Flocke and G. Gregori and D. Q. Lamb and D. Lee and J. Meinecke and A. Scopatz and K. Weide},
      title = {FLASH magnetohydrodynamic simulations of shock-generated magnetic field experiments},
      journal = {High Energy Density Physics},
      year = {2012},
      volume = {8},
      number = {4},
      pages = {322 - 328},
      url = {http://www.sciencedirect.com/science/article/pii/S157418181200095X},
      doi = {http://dx.doi.org/10.1016/j.hedp.2012.08.001}
    }
    
    Umetsu, K., Medezinski, E., Broadhurst, T., Zitrin, A., Okabe, N., Hsieh, B. & Molnar, S. The Mass Structure of the Galaxy Cluster Cl0024+ 1654 from a Full Lensing Analysis of Joint Subaru and ACS/NIC3 Observations 2010 The Astrophysical Journal
    Vol. 714, pp. 1470 
    article  
    BibTeX:
    @article{umetsu2010mass,
      author = {Umetsu, K. and Medezinski, E. and Broadhurst, T. and Zitrin, A. and Okabe, N. and Hsieh, B.C. and Molnar, S.M.},
      title = {The Mass Structure of the Galaxy Cluster Cl0024+ 1654 from a Full Lensing Analysis of Joint Subaru and ACS/NIC3 Observations},
      journal = {The Astrophysical Journal},
      publisher = {IOP Publishing},
      year = {2010},
      volume = {714},
      pages = {1470}
    }
    
    de Val Borro, M. Instabilities in protoplanetary disks 2004   techreport  
    BibTeX:
    @techreport{ValBorro2004,
      author = {de Val Borro, M.},
      title = {Instabilities in protoplanetary disks},
      year = {2004}
    }
    
    de Val-Borro, M., Gahm, G.F., Stempels, H.C. & Pepliński, A. Modelling circumbinary gas flows in close T Tauri binaries 2011 Monthly Notices of the Royal Astronomical Society  article  
    BibTeX:
    @article{de2011modelling,
      author = {de Val-Borro, M. and Gahm, G. F. and Stempels, H. C. and Pepliński, A.},
      title = {Modelling circumbinary gas flows in close T Tauri binaries},
      journal = {Monthly Notices of the Royal Astronomical Society},
      publisher = {Wiley Online Library},
      year = {2011}
    }
    
    de Val-Borro, M., Karovska, M. & Sasselov, D. Numerical Simulations of Wind Accretion in Symbiotic Binaries 2009 The Astrophysical Journal
    Vol. 700, pp. 1148 
    article  
    BibTeX:
    @article{de2009numerical,
      author = {de Val-Borro, M. and Karovska, M. and Sasselov, D.},
      title = {Numerical Simulations of Wind Accretion in Symbiotic Binaries},
      journal = {The Astrophysical Journal},
      publisher = {IOP Publishing},
      year = {2009},
      volume = {700},
      pages = {1148}
    }
    
    de Val-Borro, M., Karovska, M. & Sasselov, D. NUMERICAL SIMULATIONS OF WIND ACCRETION IN SYMBIOTIC BINARIES 2009 The Astrophysical Journal
    Vol. 700(2), pp. 1148 
    article URL 
    Abstract: About half of the binary systems are close enough to each other for mass to be exchanged between them at some point in their evolution, yet the accretion mechanism in wind accreting binaries is not well understood. We study the dynamical effects of gravitational focusing by a binary companion on winds from late-type stars. In particular, we investigate the mass transfer and formation of accretion disks around the secondary in detached systems consisting of an asymptotic giant branch (AGB) mass-losing star and an accreting companion. The presence of mass outflows is studied as a function of mass-loss rate, wind temperature, and binary orbital parameters. A two-dimensional hydrodynamical model is used to study the stability of mass transfer in wind accreting symbiotic binary systems. In our simulations we use an adiabatic equation of state and a modified version of the isothermal approximation, where the temperature depends on the distance from the mass losing star and its companion. The code uses a block-structured adaptive mesh refinement method that allows us to have high resolution at the position of the secondary and resolve the formation of bow shocks and accretion disks. We explore the accretion flow between the components and formation of accretion disks for a range of orbital separations and wind parameters. Our results show the formation of stream flow between the stars and accretion disks of various sizes for certain orbital configurations. For a typical slow and massive wind from an AGB star the flow pattern is similar to a Roche lobe overflow with accretion rates of 10% of the mass loss from the primary. Stable disks with exponentially decreasing density profiles and masses of the order 10 ???4 solar masses are formed when wind acceleration occurs at several stellar radii. The disks are geometrically thin with eccentric streamlines and close to Keplerian velocity profiles. The formation of tidal streams and accretion disks is found to be weakly dependent on the mass loss from the AGB star. Our simulations of gravitationally focused wind accretion in symbiotic binaries show the formation of stream flows and enhanced accretion rates onto the compact component. We conclude that mass transfer through a focused wind is an important mechanism in wind accreting interacting binaries and can have a significant impact on the evolution of the binary itself and the individual components.
    BibTeX:
    @article{Val-Borro2009,
      author = {M. de Val-Borro and M. Karovska and D. Sasselov},
      title = {NUMERICAL SIMULATIONS OF WIND ACCRETION IN SYMBIOTIC BINARIES},
      journal = {The Astrophysical Journal},
      year = {2009},
      volume = {700},
      number = {2},
      pages = {1148},
      url = {http://stacks.iop.org/0004-637X/700/i=2/a=1148}
    }
    
    Valcke, S., De Rijcke, S., Roediger, E. & Dejonghe, H. Kelvin--Helmholtz instabilities in smoothed particle hydrodynamics 2010 Monthly Notices of the Royal Astronomical Society
    Vol. 408(1), pp. 71-86 
    article  
    BibTeX:
    @article{valcke2010kelvin,
      author = {Valcke, S. and De Rijcke, S. and Roediger, E. and Dejonghe, H.},
      title = {Kelvin--Helmholtz instabilities in smoothed particle hydrodynamics},
      journal = {Monthly Notices of the Royal Astronomical Society},
      publisher = {Wiley Online Library},
      year = {2010},
      volume = {408},
      number = {1},
      pages = {71--86}
    }
    
    Van Eerten, H., Zhang, W. & MacFadyen, A. Off-axis Gamma-ray Burst Afterglow Modeling Based on a Two-dimensional Axisymmetric Hydrodynamics Simulation 2010 The Astrophysical Journal
    Vol. 722, pp. 235 
    article  
    BibTeX:
    @article{van2010off,
      author = {Van Eerten, H. and Zhang, W. and MacFadyen, A.},
      title = {Off-axis Gamma-ray Burst Afterglow Modeling Based on a Two-dimensional Axisymmetric Hydrodynamics Simulation},
      journal = {The Astrophysical Journal},
      publisher = {IOP Publishing},
      year = {2010},
      volume = {722},
      pages = {235}
    }
    
    Vazza, F., Roediger, E. & Brüggen, M. Turbulence in the ICM from mergers, cool-core sloshing, and jets: results from a new multi-scale filtering approach 2012 Astronomy & Astrophysics
    Vol. 544 
    article  
    BibTeX:
    @article{vazza2012turbulence,
      author = {Vazza, F. and Roediger, E. and Brüggen, M.},
      title = {Turbulence in the ICM from mergers, cool-core sloshing, and jets: results from a new multi-scale filtering approach},
      journal = {Astronomy & Astrophysics},
      publisher = {EDP Sciences},
      year = {2012},
      volume = {544}
    }
    
    Vigelius, M., Melatos, A., Chatterjee, S., Gaensler, B.M. & Ghavamian, P. Three-dimensional hydrodynamic simulations of asymmetric pulsar wind bow shocks 2007 Monthly Notices of the RAS
    Vol. 374, pp. 793-808 
    article DOI  
    BibTeX:
    @article{Vigelius2007,
      author = {Vigelius, M. and Melatos, A. and Chatterjee, S. and Gaensler, B.~M. and Ghavamian, P.},
      title = {Three-dimensional hydrodynamic simulations of asymmetric pulsar wind bow shocks},
      journal = {Monthly Notices of the RAS},
      year = {2007},
      volume = {374},
      pages = {793-808},
      doi = {http://dx.doi.org/10.1111/j.1365-2966.2006.11193.x}
    }
    
    Vijayaraghavan, R. & Ricker, P.M. Pre-processing and post-processing in group--cluster mergers 2013 mnras  article DOI  
    BibTeX:
    @article{2013MNRAS.tmp.2152V,
      author = {Vijayaraghavan, R. and Ricker, P. M.},
      title = {Pre-processing and post-processing in group--cluster mergers},
      journal = {mnras},
      year = {2013},
      doi = {http://dx.doi.org/10.1093/mnras/stt1485}
    }
    
    Vishwanath, V., Hereld, M., Morozov, V. & Papka, M. Topology-aware data movement and staging for I/O acceleration on Blue Gene/P supercomputing systems 2011 Proceedings of 2011 International Conference for High Performance Computing, Networking, Storage and Analysis, pp. 19  inproceedings  
    BibTeX:
    @inproceedings{vishwanath2011topology,
      author = {Vishwanath, V. and Hereld, M. and Morozov, V. and Papka, M.E.},
      title = {Topology-aware data movement and staging for I/O acceleration on Blue Gene/P supercomputing systems},
      booktitle = {Proceedings of 2011 International Conference for High Performance Computing, Networking, Storage and Analysis},
      year = {2011},
      pages = {19}
    }
    
    Vishwanath, V., Hereld, M. & Papka, M. Toward simulation-time data analysis and I/O acceleration on leadership-class systems 2011 Large Data Analysis and Visualization (LDAV), 2011 IEEE Symposium on, pp. 9-14  inproceedings  
    BibTeX:
    @inproceedings{vishwanath2011toward,
      author = {Vishwanath, V. and Hereld, M. and Papka, M.E.},
      title = {Toward simulation-time data analysis and I/O acceleration on leadership-class systems},
      booktitle = {Large Data Analysis and Visualization (LDAV), 2011 IEEE Symposium on},
      year = {2011},
      pages = {9--14}
    }
    
    Vladimirova, N. & Chertkov, M. Self-Similarity, Scale-Separation and Universality in Rayleigh-Taylor, Boussinesq Turbulence 2007 preprint  misc  
    BibTeX:
    @misc{Vladimirova2007a,
      author = {Vladimirova, N. and Chertkov, M.},
      title = {Self-Similarity, Scale-Separation and Universality in Rayleigh-Taylor, Boussinesq Turbulence},
      booktitle = {preprint},
      year = {2007}
    }
    
    Vladimirova, N. Model Flames in the Boussinesq Limit: Rising Bubbles 2007 Combustion Theory and Modelling
    Vol. 11(3), pp. 377-400 
    article  
    BibTeX:
    @article{Vladimirova2007,
      author = {Vladimirova, Natalia},
      title = {Model Flames in the Boussinesq Limit: Rising Bubbles},
      journal = {Combustion Theory and Modelling},
      year = {2007},
      volume = {11},
      number = {3},
      pages = {377--400}
    }
    
    Vladimirova, N., Constantin, P., Kiselev, A., Ruchayskiy, O. & Ryzhik, L. Flame enhancement and quenching in fluid flows 2003 Combustion Theory Modelling
    Vol. 7, pp. 487-508 
    article DOI  
    BibTeX:
    @article{Vladimirova2003,
      author = {Vladimirova, N. and Constantin, P. and Kiselev, A. and Ruchayskiy, O. and Ryzhik, L.},
      title = {Flame enhancement and quenching in fluid flows},
      journal = {Combustion Theory Modelling},
      year = {2003},
      volume = {7},
      pages = {487-508},
      doi = {http://dx.doi.org/10.1088/1364-7830/7/3/303}
    }
    
    Vladimirova, N. & Rosner, R. Model flames in the Boussinesq limit: The effects of feedback 2003 Physical Review E
    Vol. 67(6), pp. 066305-+ 
    article DOI  
    BibTeX:
    @article{Vladimirova2003a,
      author = {Vladimirova, N. and Rosner, R.},
      title = {Model flames in the Boussinesq limit: The effects of feedback},
      journal = {Physical Review E},
      year = {2003},
      volume = {67},
      number = {6},
      pages = {066305-+},
      doi = {http://dx.doi.org/10.1103/PhysRevE.67.066305}
    }
    
    Vladimirova, N., Weirs, V.G. & Ryzhik, L. Flame capturing with an advectionreactiondiffusion model 2006 Combustion Theory and Modelling
    Vol. 10(5), pp. 727-747 
    article  
    BibTeX:
    @article{Vladimirova2006,
      author = {Vladimirova, Natalia and Weirs, V. Gregory and Ryzhik, Lenya},
      title = {Flame capturing with an advectionreactiondiffusion model},
      journal = {Combustion Theory and Modelling},
      year = {2006},
      volume = {10},
      number = {5},
      pages = {727--747}
    }
    
    Vogt, F. & Wagner, A.Y. Stereo pairs in Astrophysics 2012 Astrophysics and Space Science
    Vol. 337(1), pp. 79-92 
    article  
    BibTeX:
    @article{vogt2012stereo,
      author = {Vogt, F. and Wagner, A. Y.},
      title = {Stereo pairs in Astrophysics},
      journal = {Astrophysics and Space Science},
      publisher = {Springer},
      year = {2012},
      volume = {337},
      number = {1},
      pages = {79--92}
    }
    
    Waagan, K., Federrath, C. & Klingenberg, C. A robust numerical scheme for highly compressible magnetohydrodynamics: Nonlinear stability, implementation and tests 2011 Journal of Computational Physics
    Vol. 230, pp. 3331-3351 
    article DOI  
    BibTeX:
    @article{2011JCoPh.230.3331W,
      author = {Waagan, K. and Federrath, C. and Klingenberg, C.},
      title = {A robust numerical scheme for highly compressible magnetohydrodynamics: Nonlinear stability, implementation and tests},
      journal = {Journal of Computational Physics},
      year = {2011},
      volume = {230},
      pages = {3331-3351},
      doi = {http://dx.doi.org/10.1016/j.jcp.2011.01.026}
    }
    
    Wadsley, J.W., Veeravalli, G. & Couchman, H.M.P. On the treatment of entropy mixing in numerical cosmology 2008 Monthly Notices of the RAS
    Vol. 387, pp. 427-438 
    article DOI  
    BibTeX:
    @article{Wadsley2008,
      author = {Wadsley, J.~W. and Veeravalli, G. and Couchman, H.~M.~P.},
      title = {On the treatment of entropy mixing in numerical cosmology},
      journal = {Monthly Notices of the RAS},
      year = {2008},
      volume = {387},
      pages = {427-438},
      doi = {http://dx.doi.org/10.1111/j.1365-2966.2008.13260.x}
    }
    
    Wagner, A., Bicknell, G. & Umemura, M. Driving Outflows with Relativistic Jets and the Dependence of Active Galactic Nucleus Feedback Efficiency on Interstellar Medium Inhomogeneity 2012 The Astrophysical Journal
    Vol. 757(2), pp. 136 
    article  
    BibTeX:
    @article{wagner2012driving,
      author = {Wagner, AY and Bicknell, GV and Umemura, M.},
      title = {Driving Outflows with Relativistic Jets and the Dependence of Active Galactic Nucleus Feedback Efficiency on Interstellar Medium Inhomogeneity},
      journal = {The Astrophysical Journal},
      publisher = {IOP Publishing},
      year = {2012},
      volume = {757},
      number = {2},
      pages = {136}
    }
    
    Wagner, A., Bicknell, G. & Umemura, M. Driving Outflows with Relativistic Jets and the Dependence of AGN Feedback Efficiency on ISM Inhomogeneity 2012 arXiv preprint arXiv:1205.0542  article  
    BibTeX:
    @article{wagner2012driving,
      author = {Wagner, AY and Bicknell, GV and Umemura, M.},
      title = {Driving Outflows with Relativistic Jets and the Dependence of AGN Feedback Efficiency on ISM Inhomogeneity},
      journal = {arXiv preprint arXiv:1205.0542},
      year = {2012}
    }
    
    Wagner, A.Y. & Bicknell, G.V. Relativistic Jet Feedback in Evolving Galaxies 2011 The Astrophysical Journal
    Vol. 728, pp. 29-+ 
    article DOI  
    Abstract: Over cosmic time, galaxies grow through the hierarchical merging of smaller galaxies. However, the bright region of the galaxy luminosity function is incompatible with the simplest version of hierarchical merging, and it is believed that feedback from the central black hole in the host galaxies reduces the number of bright galaxies and regulates the co-evolution of the black hole and host galaxy. Numerous simulations of galaxy evolution have attempted to include the physical effects of such feedback with a resolution usually exceeding a kiloparsec. However, interactions between jets and the interstellar medium involve processes occurring on less than kiloparsec scales. In order to further the understanding of processes occurring on such scales, we present a suite of simulations of relativistic jets interacting with a fractal two-phase interstellar medium with a resolution of two parsecs and a largest scale of one kiloparsec. The transfer of energy and momentum to the interstellar medium is considerable, and we find that jets with powers in the range of 10^43-10^46 erg s^-1 can inhibit star formation through the dispersal of dense gas in the galaxy core. We determine the effectiveness of this process as a function of the ratio of the jet power to the Eddington luminosity of the black hole, the pressure of the interstellar medium, and the porosity of the dense gas.
    BibTeX:
    @article{wagner2011a,
      author = {Wagner, A.~Y. and Bicknell, G.~V.},
      title = {Relativistic Jet Feedback in Evolving Galaxies},
      journal = {The Astrophysical Journal},
      year = {2011},
      volume = {728},
      pages = {29-+},
      doi = {http://dx.doi.org/10.1088/0004-637X/728/1/29}
    }
    
    Walch, S., Burkert, A., Whitworth, A., Naab, T. & Gritschneder, M. Protostellar discs formed from rigidly rotating cores 2009 Monthly Notices of the Royal Astronomical Society
    Vol. 400(1), pp. 13-25 
    article  
    BibTeX:
    @article{Walch2009,
      author = {Walch, S. and Burkert, A. and Whitworth, A. and Naab, T. and Gritschneder, M.},
      title = {Protostellar discs formed from rigidly rotating cores},
      journal = {Monthly Notices of the Royal Astronomical Society},
      publisher = {Blackwell Publishing},
      year = {2009},
      volume = {400},
      number = {1},
      pages = {13--25}
    }
    
    Walch, S., Wünsch, R., Burkert, A., Glover, S. & Whitworth, A. The Turbulent Fragmentation of the Interstellar Medium: The Impact of Metallicity on Global Star Formation 2011 The Astrophysical Journal
    Vol. 733, pp. 47 
    article  
    BibTeX:
    @article{walch2011turbulent,
      author = {Walch, S. and Wünsch, R. and Burkert, A. and Glover, S. and Whitworth, A.},
      title = {The Turbulent Fragmentation of the Interstellar Medium: The Impact of Metallicity on Global Star Formation},
      journal = {The Astrophysical Journal},
      publisher = {IOP Publishing},
      year = {2011},
      volume = {733},
      pages = {47}
    }
    
    Watson, P.G. & Craig, I.J.D. Fast Magnetic Reconnection via Jets and Current Microsheets 2003 Astrophysical Journal, Letters
    Vol. 590, pp. L57-L60 
    article DOI  
    BibTeX:
    @article{Watson2003,
      author = {Watson, P.~G. and Craig, I.~J.~D.},
      title = {Fast Magnetic Reconnection via Jets and Current Microsheets},
      journal = {Astrophysical Journal, Letters},
      year = {2003},
      volume = {590},
      pages = {L57-L60},
      doi = {http://dx.doi.org/10.1086/376566}
    }
    
    van Weeren, R., Brüggen, M., Röttgering, H. & Hoeft, M. Relics as probes of galaxy cluster mergers 2011 Journal of Astrophysics and Astronomy, pp. 1-4  article  
    BibTeX:
    @article{van2011relics,
      author = {van Weeren, RJ and Brüggen, M. and Röttgering, H.J.A. and Hoeft, M.},
      title = {Relics as probes of galaxy cluster mergers},
      journal = {Journal of Astrophysics and Astronomy},
      publisher = {Springer},
      year = {2011},
      pages = {1--4}
    }
    
    van Weeren, R., Brüggen, M., Röttgering, H. & Hoeft, M. Using double radio relics to constrain galaxy cluster mergers: a model of double radio relics in CIZA J2242. 8+ 5301 2011 Monthly Notices of the Royal Astronomical Society  article  
    BibTeX:
    @article{van2011using,
      author = {van Weeren, RJ and Brüggen, M. and Röttgering, HJA and Hoeft, M.},
      title = {Using double radio relics to constrain galaxy cluster mergers: a model of double radio relics in CIZA J2242. 8+ 5301},
      journal = {Monthly Notices of the Royal Astronomical Society},
      publisher = {Wiley Online Library},
      year = {2011}
    }
    
    Weirs, V., Dupont, T. & Plewa, T. Three-Dimensional Effects in Shock-Cylinder Interactions 2008 Physics of Fluids
    Vol. 20, pp. 044102 
    article  
    BibTeX:
    @article{Weirs2008,
      author = {Weirs, V.G. and Dupont, T. and Plewa, T.},
      title = {Three-Dimensional Effects in Shock-Cylinder Interactions},
      journal = {Physics of Fluids},
      year = {2008},
      volume = {20},
      pages = {044102}
    }
    
    Weirs, G., Dwarkadas, V., Plewa, T., Tomkins, C. & Marr-Lyon, M. Validating the FLASH Code: Vortex-Dominated Flows 2005 Astrophysics and Space Science
    Vol. 298, pp. 341-346 
    article DOI  
    BibTeX:
    @article{Weirs2005,
      author = {Weirs, G. and Dwarkadas, V. and Plewa, T. and Tomkins, C. and Marr-Lyon, M.},
      title = {Validating the FLASH Code: Vortex-Dominated Flows},
      journal = {Astrophysics and Space Science},
      year = {2005},
      volume = {298},
      pages = {341-346},
      doi = {http://dx.doi.org/10.1007/s10509-005-3966-5}
    }
    
    Westerberg, L. Solar wind interaction with the terrestrial magnetopause 2007 School: Lulea University of Technology  phdthesis  
    BibTeX:
    @phdthesis{Westerberg2007a,
      author = {Westerberg, L.G.},
      title = {Solar wind interaction with the terrestrial magnetopause},
      publisher = {Tillämpad fysik, maskin-och materialteknik/Strömningslära},
      school = {Lulea University of Technology},
      year = {2007},
      note = {http://epubl.ltu.se/1402-1544/2007/33/}
    }
    
    Westerberg, L., Vedin, J., Enkenbäck, A. & Åkerstedt, H. Three-dimensional flow near a reconnection site at the dayside magnetopause: analytical solutions coupled with MHD simulations 2007 Journal of Plasma Physics
    Vol. 73, pp. 811-819 
    article  
    BibTeX:
    @article{Westerberg2007,
      author = {Westerberg, L.G. and Vedin, J. and Enkenbäck, A. and Åkerstedt, H.O.},
      title = {Three-dimensional flow near a reconnection site at the dayside magnetopause: analytical solutions coupled with MHD simulations},
      journal = {Journal of Plasma Physics},
      publisher = {Cambridge Univ Press},
      year = {2007},
      volume = {73},
      pages = {811--819}
    }
    
    Wheeler, J.C., Maund, J.R. & Couch, S.M. The Shape of Cas A 2008 Astrophysical Journal
    Vol. 677, pp. 1091-1099 
    article DOI  
    BibTeX:
    @article{Wheeler2008,
      author = {Wheeler, J.~C. and Maund, J.~R. and Couch, S.~M.},
      title = {The Shape of Cas A},
      journal = {Astrophysical Journal},
      year = {2008},
      volume = {677},
      pages = {1091-1099},
      doi = {http://dx.doi.org/10.1086/528366}
    }
    
    Woitke, P. Dust-driven Winds Beyond Spherical Symmetry 2008
    Vol. 252IAU Symposium, pp. 229-234 
    inproceedings DOI  
    BibTeX:
    @inproceedings{Woitke2008,
      author = {Woitke, P.},
      title = {Dust-driven Winds Beyond Spherical Symmetry},
      booktitle = {IAU Symposium},
      year = {2008},
      volume = {252},
      pages = {229-234},
      doi = {http://dx.doi.org/10.1017/S1743921308022849}
    }
    
    Woitke, P. Monte Carlo Radiative Transfer in Multi-D Dynamical Models of Dust-Driven Winds 2008
    Vol. 28EAS Publications Series, pp. 75-83 
    inproceedings DOI  
    BibTeX:
    @inproceedings{2008EAS....28...75W,
      author = {Woitke, P.},
      title = {Monte Carlo Radiative Transfer in Multi-D Dynamical Models of Dust-Driven Winds},
      booktitle = {EAS Publications Series},
      year = {2008},
      volume = {28},
      pages = {75-83},
      doi = {http://dx.doi.org/10.1051/eas:0828012}
    }
    
    Woitke, P. Too little radiation pressure on dust in the winds of oxygen-rich AGB stars 2006 Astronomy and Astrophysics
    Vol. 460, pp. L9-L12 
    article DOI  
    BibTeX:
    @article{Woitke2006,
      author = {Woitke, P.},
      title = {Too little radiation pressure on dust in the winds of oxygen-rich AGB stars},
      journal = {Astronomy and Astrophysics},
      year = {2006},
      volume = {460},
      pages = {L9-L12},
      doi = {http://dx.doi.org/10.1051/0004-6361:20066322}
    }
    
    Woitke, P. 2D models for dust-driven AGB star winds 2006 Astronomy and Astrophysics
    Vol. 452, pp. 537-549 
    article DOI  
    BibTeX:
    @article{Woitke2006a,
      author = {Woitke, P.},
      title = {2D models for dust-driven AGB star winds},
      journal = {Astronomy and Astrophysics},
      year = {2006},
      volume = {452},
      pages = {537-549},
      doi = {http://dx.doi.org/10.1051/0004-6361:20054202}
    }
    
    Wood, K., Hill, A.S., Joung, M.R., Mac Low, M.-M., Benjamin, R.A., Haffner, L.M., Reynolds, R.J. & Madsen, G.J. Photoionization of High-altitude Gas in a Supernova-driven Turbulent Interstellar Medium 2010 The Astrophysical Journal
    Vol. 721, pp. 1397-1403 
    article DOI  
    BibTeX:
    @article{2010ApJ...721.1397W,
      author = {Wood, K. and Hill, A.~S. and Joung, M.~R. and Mac Low, M.-M. and Benjamin, R.~A. and Haffner, L.~M. and Reynolds, R.~J. and Madsen, G.~J.},
      title = {Photoionization of High-altitude Gas in a Supernova-driven Turbulent Interstellar Medium},
      journal = {The Astrophysical Journal},
      year = {2010},
      volume = {721},
      pages = {1397-1403},
      doi = {http://dx.doi.org/10.1088/0004-637X/721/2/1397}
    }
    
    Wright, S.A., Hammond, S.D., Pennycook, S.J., Bird, R., Herdman, J., Miller, I., Vadgama, A., Bhalerao, A. & Jarvis, S.A. Parallel file system analysis through application I/O tracing 2013 The Computer Journal
    Vol. 56(2), pp. 141-155 
    article  
    BibTeX:
    @article{wright2013parallel,
      author = {Wright, Steven A and Hammond, Simon D and Pennycook, Simon J and Bird, RF and Herdman, JA and Miller, I and Vadgama, A and Bhalerao, A and Jarvis, Stephen A},
      title = {Parallel file system analysis through application I/O tracing},
      journal = {The Computer Journal},
      publisher = {Br Computer Soc},
      year = {2013},
      volume = {56},
      number = {2},
      pages = {141--155}
    }
    
    Wright, S., Hammond, S., Pennycook, S. & Jarvis, S. Light-Weight Parallel I/O Analysis at Scale 2011 Computer Performance Engineering, pp. 235-249  article  
    BibTeX:
    @article{wright2011light,
      author = {Wright, S. and Hammond, S. and Pennycook, S. and Jarvis, S.},
      title = {Light-Weight Parallel I/O Analysis at Scale},
      journal = {Computer Performance Engineering},
      publisher = {Springer},
      year = {2011},
      pages = {235--249}
    }
    
    Wright, S., Hammond, S., Pennycook, S., Miller, I., Herdman, J. & Jarvis, S. LDPLFS: improving I/O performance without application modification 2012 Parallel and Distributed Processing Symposium Workshops & PhD Forum (IPDPSW), 2012 IEEE 26th International, pp. 1352-1359  inproceedings  
    BibTeX:
    @inproceedings{wright2012ldplfs,
      author = {Wright, S.A. and Hammond, S.D. and Pennycook, S.J. and Miller, I. and Herdman, JA and Jarvis, S.A.},
      title = {LDPLFS: improving I/O performance without application modification},
      booktitle = {Parallel and Distributed Processing Symposium Workshops & PhD Forum (IPDPSW), 2012 IEEE 26th International},
      year = {2012},
      pages = {1352--1359}
    }
    
    Wright, S., Pennycook, S., Hammond, S. & Jarvis, S. RIOT-A Parallel Input/Output Tracer 2011   article  
    BibTeX:
    @article{wright2011riot,
      author = {Wright, SA and Pennycook, SJ and Hammond, SD and Jarvis, SA},
      title = {RIOT-A Parallel Input/Output Tracer},
      year = {2011}
    }
    
    Wu, C.E., Bolmarcich, A., Snir, M., Wootton, D., Parpia, F., Chan, A., Lusk, E. & Gropp, W. From trace generation to visualization: a performance framework for distributed parallel systems 2000 Supercomputing '00: Proceedings of the 2000 ACM/IEEE conference on Supercomputing (CDROM), pp. 50  inproceedings  
    BibTeX:
    @inproceedings{Wu2000,
      author = {Wu, C. Eric and Bolmarcich, A. and Snir, M. and Wootton, D. and Parpia, Farid and Chan, Anthony and Lusk, Ewing and Gropp, William},
      title = {From trace generation to visualization: a performance framework for distributed parallel systems},
      booktitle = {Supercomputing '00: Proceedings of the 2000 ACM/IEEE conference on Supercomputing (CDROM)},
      publisher = {IEEE Computer Society},
      year = {2000},
      pages = {50}
    }
    
    Yang, H., Ricker, P. & Sutter, P. The Influence of Concentration and Dynamical State on Scatter in the Galaxy Cluster Mass-Temperature Relation 2009 The Astrophysical Journal
    Vol. 699, pp. 315 
    article  
    BibTeX:
    @article{yang2009influence,
      author = {Yang, H.Y.K. and Ricker, P.M. and Sutter, PM},
      title = {The Influence of Concentration and Dynamical State on Scatter in the Galaxy Cluster Mass-Temperature Relation},
      journal = {The Astrophysical Journal},
      publisher = {IOP Publishing},
      year = {2009},
      volume = {699},
      pages = {315}
    }
    
    Yang, H.Y.K., Ruszkowski, M., Ricker, P.M., Zweibel, E. & Lee, D. The Fermi Bubbles: Supersonic Active Galactic Nucleus Jets with Anisotropic Cosmic-Ray Diffusion 2012 The Astrophysical Journal
    Vol. 761(2), pp. 185 
    article  
    BibTeX:
    @article{yang2012fermi,
      author = {Yang, H. Y. K. and Ruszkowski, M. and Ricker, P. M. and Zweibel, E. and Lee, D.},
      title = {The Fermi Bubbles: Supersonic Active Galactic Nucleus Jets with Anisotropic Cosmic-Ray Diffusion},
      journal = {The Astrophysical Journal},
      publisher = {IOP Publishing},
      year = {2012},
      volume = {761},
      number = {2},
      pages = {185}
    }
    
    Yang, H. -Y..K., Sutter, P.M. & Ricker, P.M. Theoretical Uncertainties of AGN Subgrid Models in Predictions of Galaxy Cluster Observable Properties 2012 Monthly Notices of the Royal Astronomical Society
    Vol. submitted 
    article  
    BibTeX:
    @article{yang_theoretical_2012,
      author = {Yang, H. -Y. Karen and Sutter, P. M. and Ricker, P. M.},
      title = {Theoretical Uncertainties of AGN Subgrid Models in Predictions of Galaxy Cluster Observable Properties},
      journal = {Monthly Notices of the Royal Astronomical Society},
      year = {2012},
      volume = {submitted}
    }
    
    Yang, H.-Y., Ruszkowski, M. & Zweibel, E. The Fermi Bubbles: Gamma-ray, Microwave, and Polarization Signatures of Leptonic AGN Jets 2013 arXiv preprint arXiv:1307.3551  article  
    BibTeX:
    @article{yang2013fermi,
      author = {Yang, H-YK and Ruszkowski, M. and Zweibel, E.},
      title = {The Fermi Bubbles: Gamma-ray, Microwave, and Polarization Signatures of Leptonic AGN Jets},
      journal = {arXiv preprint arXiv:1307.3551},
      year = {2013}
    }
    
    Yang, H.-Y.., Ricker, P.M. & Sutter, P.M. The Influence of AGN Feedback on Galaxy Cluster Observables 2009
    Vol. 1201American Institute of Physics Conference Series, pp. 350-353 
    inproceedings DOI  
    BibTeX:
    @inproceedings{yang_influence_2009-1,
      author = {Yang, H.-Y. and Ricker, P. M. and Sutter, P. M.},
      title = {The Influence of AGN Feedback on Galaxy Cluster Observables},
      booktitle = {American Institute of Physics Conference Series},
      year = {2009},
      volume = {1201},
      pages = {350--353},
      doi = {http://dx.doi.org/10.1063/1.3293074}
    }
    
    Yang, H.-Y..K., Bhattacharya, S. & Ricker, P.M. The Impact of Cluster Structure and Dynamical State on Scatter in the Sunyaev-Zel'dovich Flux-mass Relation 2010 The Astrophysical Journal
    Vol. 725, pp. 1124-1136 
    article DOI  
    BibTeX:
    @article{yang_impact_2010,
      author = {Yang, H.-Y. K. and Bhattacharya, S. and Ricker, P. M.},
      title = {The Impact of Cluster Structure and Dynamical State on Scatter in the Sunyaev-Zel'dovich Flux-mass Relation},
      journal = {The Astrophysical Journal},
      year = {2010},
      volume = {725},
      pages = {1124--1136},
      doi = {http://dx.doi.org/10.1088/0004-637X/725/1/1124}
    }
    
    Yang, Hsiang-Yi.K., Ricker, P.M. & Sutter, P.M. The Influence of Concentration and Dynamical State on Scatter in the Galaxy Cluster Mass-Temperature Relation 2009 Astrophysical Journal
    Vol. 699, pp. 315-329 
    article URL 
    Abstract: Using a hydrodynamics plus N-body simulation of galaxy cluster formation within a large volume and mock Chandra X-ray observations, we study the form and evolution of the intrinsic scatter about the best-fit X-ray temperature-mass relation for clusters. We investigate the physical origin of the scatter by correlating it with quantities that are closely related to clusters' formation and merging histories. We also examine the distribution of the scatter for merging and non-merging populations, identified using halo merger trees derived from the simulation as well as X-ray substructure measures. We find a strong correlation between the scatter in the M-TX relation and the halo concentration, in the sense that more concentrated clusters tend to be cooler than clusters with similar masses. No bias is found between the merging and relaxed clusters, but merging clusters generally have greater scatter, which is related to the properties of the distribution of halo concentrations. We also detect a signature of non-lognormality in the distribution of scatter for our simulated clusters both at z = 0 and at z = 1. A detailed comparison of merging clusters identified by substructure measures and by halo merger trees is given in the discussion. We conclude that, when cooling-related effects are neglected, the variation in halo concentrations is a more important factor for driving the intrinsic scatter in the M-TX relation, while departures from hydrostatic equilibrium due to cluster mergers have a minor effect.
    BibTeX:
    @article{yang_influence_2009,
      author = {Yang, Hsiang-Yi Karen and Ricker, Paul M. and Sutter, P. M.},
      title = {The Influence of Concentration and Dynamical State on Scatter in the Galaxy Cluster Mass-Temperature Relation},
      journal = {Astrophysical Journal},
      year = {2009},
      volume = {699},
      pages = {315--329},
      url = {http://adsabs.harvard.edu/abs/2009ApJ...699..315Y}
    }
    
    Yoon, D. INTERACTION OF MICROQUASAR JETS WITH ISM: LMXBS/HMXBS   article  
    BibTeX:
    @article{yooninteraction,
      author = {Yoon, DooSoo},
      title = {INTERACTION OF MICROQUASAR JETS WITH ISM: LMXBS/HMXBS}
    }
    
    Yoon, D., Morsony, B., Heinz, S., Wiersema, K., Fender, R., Russell, D. & Sunyaev, R. Jet Trails and Mach Cones: The Interaction of Microquasars with the Interstellar Medium 2011 The Astrophysical Journal
    Vol. 742, pp. 25 
    article  
    BibTeX:
    @article{yoon2011jet,
      author = {Yoon, D. and Morsony, B. and Heinz, S. and Wiersema, K. and Fender, RP and Russell, DM and Sunyaev, R.},
      title = {Jet Trails and Mach Cones: The Interaction of Microquasars with the Interstellar Medium},
      journal = {The Astrophysical Journal},
      publisher = {IOP Publishing},
      year = {2011},
      volume = {742},
      pages = {25}
    }
    
    Yoon, D., Morsony, B., Heinz, S., Wiersema, K., Fender, R., Russell, D. & Sunyaev, R. Jet trails and Mach cones: The interaction of microquasars with the ISM 2011 Arxiv preprint arXiv:1108.4058  article  
    BibTeX:
    @article{yoon2011jet,
      author = {Yoon, D. and Morsony, B. and Heinz, S. and Wiersema, K. and Fender, R. and Russell, D. and Sunyaev, R.},
      title = {Jet trails and Mach cones: The interaction of microquasars with the ISM},
      journal = {Arxiv preprint arXiv:1108.4058},
      year = {2011}
    }
    
    Young, Y.-N., Tufo, H., Dubey, A. & Rosner, R. On the miscible Rayleigh-Taylor instability: two and three dimensions 1999 Journal of Fluid Mechanics
    Vol. 447, pp. 377-408 
    article  
    BibTeX:
    @article{Young1999,
      author = {Young, Y.-N. and Tufo, H. and Dubey, A. and Rosner, R.},
      title = {On the miscible Rayleigh-Taylor instability: two and three dimensions},
      journal = {Journal of Fluid Mechanics},
      year = {1999},
      volume = {447},
      pages = {377-408}
    }
    
    Yu, W. & Vetter, J. ParColl: Partitioned Collective I/O on the Cray XT 2008 Parallel Processing, 2008. ICPP'08. 37th International Conference on, pp. 562-569  conference  
    BibTeX:
    @conference{Yu2008,
      author = {Yu, W. and Vetter, J.},
      title = {ParColl: Partitioned Collective I/O on the Cray XT},
      booktitle = {Parallel Processing, 2008. ICPP'08. 37th International Conference on},
      year = {2008},
      pages = {562--569}
    }
    
    Yu, W., Vetter, J. & Canon, R. OPAL: An Open-Source MPI-IO Library over Cray XT 2007 International Workshop on Storage Network Architecture and Parallel I/O (SNAPI'07)  inproceedings  
    BibTeX:
    @inproceedings{Yu2007,
      author = {Yu, W. and Vetter, J.S. and Canon, R.S.},
      title = {OPAL: An Open-Source MPI-IO Library over Cray XT},
      booktitle = {International Workshop on Storage Network Architecture and Parallel I/O (SNAPI'07)},
      year = {2007}
    }
    
    Yu, W., Vetter, J. & Oral, S. Performance characterization and optimization of parallel I/O on the Cray XT 2008 IEEE International Parallel and Distributed Processing Symposium  inproceedings  
    BibTeX:
    @inproceedings{Yu2008a,
      author = {Yu, W. and Vetter, J.S. and Oral, S.},
      title = {Performance characterization and optimization of parallel I/O on the Cray XT},
      booktitle = {IEEE International Parallel and Distributed Processing Symposium},
      year = {2008}
    }
    
    Zanni, C., Ferrari, A., Rosner, R., Bodo, G. & Massaglia, S. MHD simulations of jet acceleration from Keplerian accretion disks: the effects of disk resistivity 2007 Astronomy and Astrophysics
    Vol. 469, pp. 811+ 
    article URL 
    BibTeX:
    @article{Zanni2007,
      author = {Zanni, C. and Ferrari, A. and Rosner, R. and Bodo, G. and Massaglia, S.},
      title = {MHD simulations of jet acceleration from Keplerian accretion disks: the effects of disk resistivity},
      journal = {Astronomy and Astrophysics},
      year = {2007},
      volume = {469},
      pages = {811+},
      url = {http://www.citebase.org/abstract?id=oai:arXiv.org:astro-ph/0703064}
    }
    
    Zanni, C., Ferrari, A., Massaglia, S., Bodo, G. & Rossi, P. On the MHD Acceleration of Astrophysical Jets 2004 Astrophysics and Space Science
    Vol. 293, pp. 99-106 
    article DOI  
    BibTeX:
    @article{Zanni2004,
      author = {Zanni, C. and Ferrari, A. and Massaglia, S. and Bodo, G. and Rossi, P.},
      title = {On the MHD Acceleration of Astrophysical Jets},
      journal = {Astrophysics and Space Science},
      year = {2004},
      volume = {293},
      pages = {99-106},
      doi = {http://dx.doi.org/10.1023/B:ASTR.0000044657.02793.f8}
    }
    
    Zaqarashvili, T.V., Murawski, K., Khodachenko, M.K. & Lee, D. The excitation of 5-min oscillations in the solar corona 2011 Astronomy and Astrophysics
    Vol. 529(A85) 
    article DOI  
    BibTeX:
    @article{zmkl11,
      author = {T. V. Zaqarashvili and K. Murawski and M. K. Khodachenko and D. Lee},
      title = {The excitation of 5-min oscillations in the solar corona},
      journal = {Astronomy and Astrophysics},
      year = {2011},
      volume = {529},
      number = {A85},
      doi = {http://dx.doi.org/10.1051/0004-6361/201015384}
    }
    
    Zavala, J., Balogh, M.L., Afshordi, N. & Ro, S. Removal and mixing of the coronal gas from satellites in galaxy groups: cooling the intragroup gas 2012 mnras
    Vol. 426, pp. 3464-3476 
    article DOI  
    BibTeX:
    @article{2012MNRAS.426.3464Z,
      author = {Zavala, J. and Balogh, M. L. and Afshordi, N. and Ro, S. },
      title = {Removal and mixing of the coronal gas from satellites in galaxy groups: cooling the intragroup gas},
      journal = {mnras},
      year = {2012},
      volume = {426},
      pages = {3464-3476},
      doi = {http://dx.doi.org/10.1111/j.1365-2966.2012.21980.x}
    }
    
    Zhakhovskii, V.V., Zybin, S.V., Abarzhi, S.I. & Nishihara, K. Atomistic Dynamics of the Richtmyer-Meshkov Instability in Cylindrical and Planar Geometries 2006
    Vol. 845Shock Compression of Condensed Matter, pp. 433-436 
    inproceedings DOI  
    BibTeX:
    @inproceedings{Zhakhovskii2006,
      author = {Zhakhovskii, V.~V. and Zybin, S.~V. and Abarzhi, S.~I. and Nishihara, K.},
      title = {Atomistic Dynamics of the Richtmyer-Meshkov Instability in Cylindrical and Planar Geometries},
      booktitle = {Shock Compression of Condensed Matter},
      year = {2006},
      volume = {845},
      pages = {433-436},
      doi = {http://dx.doi.org/10.1063/1.2263354}
    }
    
    Zhang, S. Adaptive mesh refinement and visiometrics in accelerated inhomogeneous flows 2004 School: Rutgers, The State University of New Jersey  phdthesis  
    BibTeX:
    @phdthesis{Zhang2004a,
      author = {Zhang, S.},
      title = {Adaptive mesh refinement and visiometrics in accelerated inhomogeneous flows},
      school = {Rutgers, The State University of New Jersey},
      year = {2004}
    }
    
    Zhang, J., Bronson Messer, O.E., Khokhlov, A.M. & Plewa, T. On the Evolution of Thermonuclear Flames on Large Scales 2007 Astrophysical Journal
    Vol. 656, pp. 347-+ 
    article  
    BibTeX:
    @article{Zhang2007,
      author = {Zhang, J. and Bronson Messer, O.~E. and Khokhlov, A.~M. and Plewa, T.},
      title = {On the Evolution of Thermonuclear Flames on Large Scales},
      journal = {Astrophysical Journal},
      year = {2007},
      volume = {656},
      pages = {347--+}
    }
    
    Zhang, S., Zabusky, N.J., Peng, G. & Gupta, S. Shock gaseous cylinder interactions: Dynamically validated initial conditions provide excellent agreement between experiments and numerical simulations to late-intermediate time 2004 Physics of Fluids
    Vol. 16, pp. 1203-+ 
    article  
    BibTeX:
    @article{Zhang2004b,
      author = {Zhang, S. and Zabusky, N.~J. and Peng, G. and Gupta, S.},
      title = {Shock gaseous cylinder interactions: Dynamically validated initial conditions provide excellent agreement between experiments and numerical simulations to late-intermediate time},
      journal = {Physics of Fluids},
      year = {2004},
      volume = {16},
      pages = {1203-+}
    }
    
    Zhang, W. & MacFadyen, A. The Dynamics and Afterglow Radiation of Gamma-Ray Bursts. I. Constant Density Medium 2009 The Astronomical Journal
    Vol. 698, pp. 1261-1272 
    article DOI  
    Abstract: Direct multidimensional numerical simulation is the most reliable approach for calculating the fluid dynamics and observational signatures of relativistic jets in gamma-ray bursts (GRBs). We present a two-dimensional relativistic hydrodynamic simulation of a GRB outflow during the afterglow phase, which uses the fifth-order weighted essentially nonoscillatory scheme and adaptive mesh refinement. Initially, the jet has a Lorentz factor of 20. We have followed its evolution up to 150 years. Using the hydrodynamic data, we calculate synchrotron radiation based upon standard afterglow models and compare our results with previous analytic work. We find that the sideways expansion of a relativistic GRB jet is a very slow process and previous analytic works have overestimated its rate. In our computed light curves, a very sharp jet break is seen and the postbreak light curves are steeper than analytic predictions. We find that the jet break in GRB afterglow light curves is mainly caused by the missing flux when the edge of the jet is observed. The outflow becomes nonrelativistic at the end of the Blandford-McKee phase. But it is still highly nonspherical, and it takes a rather long time for it to become a spherical Sedov-von Neumann-Taylor blast wave. We find that the late-time afterglows become increasingly flatter over time. But we disagree with the common notion that there is a sudden flattening in light curves due to the transition into the Sedov-von Neumann-Taylor solution. We have also found that there is a bump in light curves at very late times (~1000 days) due to radiation from the counter jet. We speculate that such a counter jet bump might have already been observed in GRB 980703.
    BibTeX:
    @article{2009ApJ...698.1261Z,
      author = {Zhang, W. and MacFadyen, A.},
      title = {The Dynamics and Afterglow Radiation of Gamma-Ray Bursts. I. Constant Density Medium},
      journal = {The Astronomical Journal},
      year = {2009},
      volume = {698},
      pages = {1261-1272},
      doi = {http://dx.doi.org/10.1088/0004-637X/698/2/1261}
    }
    
    Zhang, W. & MacFadyen, A.I. RAM: A Relativistic Adaptive Mesh Refinement Hydrodynamics Code 2006 Astrophysical Journal, Supplement
    Vol. 164, pp. 255-279 
    article DOI  
    BibTeX:
    @article{Zhang2006,
      author = {Zhang, W. and MacFadyen, A.~I.},
      title = {RAM: A Relativistic Adaptive Mesh Refinement Hydrodynamics Code},
      journal = {Astrophysical Journal, Supplement},
      year = {2006},
      volume = {164},
      pages = {255-279},
      doi = {http://dx.doi.org/10.1086/500792}
    }
    
    Zheng, G., Negara, S., Mendes, C., Kalé, L. & Rodrigues, E. Automatic Handling of Global Variables for Multi-threaded MPI Programs 2011 Parallel and Distributed Systems (ICPADS), 2011 IEEE 17th International Conference on, pp. 220-227  inproceedings  
    BibTeX:
    @inproceedings{zheng2011automatic,
      author = {Zheng, G. and Negara, S. and Mendes, C.L. and Kalé, L.V. and Rodrigues, E.R.},
      title = {Automatic Handling of Global Variables for Multi-threaded MPI Programs},
      booktitle = {Parallel and Distributed Systems (ICPADS), 2011 IEEE 17th International Conference on},
      year = {2011},
      pages = {220--227}
    }
    
    Zhiglo, A.V. Analysis of reaction-diffusion systems for flame capturing in type IA supernova simulations 2009 School: The University of Chicago  phdthesis URL 
    BibTeX:
    @phdthesis{zhiglo2009analysis,
      author = {Zhiglo, A. V.},
      title = {Analysis of reaction-diffusion systems for flame capturing in type IA supernova simulations},
      publisher = {University of Chicago, Department of Physics},
      school = {The University of Chicago},
      year = {2009},
      url = {http://arxiv.org/pdf/0906.0393.pdf}
    }
    
    Zhiglo, A.V. Flame-capturing Technique. I. Adaptation to Gas Expansion 2007 The Astrophysical Journal Supplement Series
    Vol. 169(2), pp. 386-400 
    article  
    BibTeX:
    @article{Zhiglo2007a,
      author = {Zhiglo, A. V.},
      title = {Flame-capturing Technique. I. Adaptation to Gas Expansion},
      journal = {The Astrophysical Journal Supplement Series},
      publisher = {UChicago Press},
      year = {2007},
      volume = {169},
      number = {2},
      pages = {386--400}
    }
    
    Zhou, X., Miceli, M., Bocchino, F., Orlando, S. & Chen, Y. Unveiling the spatial structure of the overionized plasma in the supernova remnant W49B 2011 Monthly Notices of the RAS
    Vol. 415, pp. 244-250 
    article DOI  
    BibTeX:
    @article{2011MNRAS.415..244Z,
      author = {Zhou, X. and Miceli, M. and Bocchino, F. and Orlando, S. and Chen, Y.},
      title = {Unveiling the spatial structure of the overionized plasma in the supernova remnant W49B},
      journal = {Monthly Notices of the RAS},
      year = {2011},
      volume = {415},
      pages = {244-250},
      doi = {http://dx.doi.org/10.1111/j.1365-2966.2011.18695.x}
    }
    
    Zingale, M.A. Helium detonations on neutron stars 2000 School: University of Chicago  phdthesis  
    BibTeX:
    @phdthesis{Zingale2000,
      author = {Zingale, M. A.},
      title = {Helium detonations on neutron stars},
      school = {University of Chicago},
      year = {2000}
    }
    
    Zingale, M., Dursi, L.J., ZuHone, J., Calder, A.C., Fryxell, B., Plewa, T., Truran, J.W., Caceres, A., Olson, K., Ricker, P.M., Riley, K., Rosner, R., Siegel, A., Timmes, F.X. & Vladimirova, N. Mapping Initial Hydrostatic Models in Godunov Codes 2002 Astrophysical Journal, Supplement
    Vol. 143, pp. 539-565 
    article DOI  
    BibTeX:
    @article{Zingale2002,
      author = {Zingale, M. and Dursi, L. J. and ZuHone, J. and Calder, A. C. and Fryxell, B. and Plewa, T. and Truran, J. W. and Caceres, A. and Olson, K. and Ricker, P. M. and Riley, K. and Rosner, R. and Siegel, A. and Timmes, F. X. and Vladimirova, N.},
      title = {Mapping Initial Hydrostatic Models in Godunov Codes},
      journal = {Astrophysical Journal, Supplement},
      year = {2002},
      volume = {143},
      pages = {539-565},
      doi = {http://dx.doi.org/10.1086/342754}
    }
    
    Zingale, M., Niemeyer, J.C., Timmes, F.X., Dursi, L.J., Calder, A.C., Fryxell, B., Lamb, D.Q., MacNeice, P., Olson, K., Ricker, P.M., Rosner, R., Truran, J.W. & Tufo, H.M. Quenching Processes in Flame-Vortex Interactions 2001 AIP Conf. Proc. 586: 20th Texas Symposium on relativistic astrophysics, pp. 490-+  inproceedings  
    BibTeX:
    @inproceedings{Zingale2001,
      author = {Zingale, M. and Niemeyer, J.~C. and Timmes, F.~X. and Dursi, L.~J. and Calder, A.~C. and Fryxell, B. and Lamb, D.~Q. and MacNeice, P. and Olson, K. and Ricker, P.~M. and Rosner, R. and Truran, J.~W. and Tufo, H.~M.},
      title = {Quenching Processes in Flame-Vortex Interactions},
      booktitle = {AIP Conf. Proc. 586: 20th Texas Symposium on relativistic astrophysics},
      year = {2001},
      pages = {490-+}
    }
    
    Zingale, M., Timmes, F.X., Fryxell, B., Lamb, D.Q., Olson, K., Calder, A.C., Dursi, L.J., Ricker, P., Rosner, R., MacNeice, P. & Tufo, H.M. Helium Detonations on Neutron Stars 2001 The Astrophysical Journal Supplement Series
    Vol. 133, pp. 195-220 
    article DOI URL 
    Abstract: We present the results of a numerical study of helium detonations on the surfaces of neutron stars. We describe two-dimensional simulations of the evolution of a detonation as it breaks through the accreted envelope of the neutron star and propagates laterally through the accreted material. The detonation front propagates laterally at nearly the Chapman-Jouguet velocity, v = 1.3 ?? 10 9 cm s -1 . A series of surface waves propagate across the pool of hot ash behind the detonation front with the same speed, matching the speed expected from shallow water wave theory. The entire envelope oscillates in the gravitational potential well of the neutron star with a period of ~50 ??s. The photosphere reaches an estimated height of 10 km above the surface of the neutron star. Our study confirms that such a detonation can insure the spread of burning over the entire neutron star surface on a timescale consistent with burst rise times. We analyze the sensitivity of the results to the spatial resolution and the assumed initial conditions. We conclude by presenting a comparison of this model to type I X-ray bursts.
    BibTeX:
    @article{Zingale2001a,
      author = {Zingale, M. and Timmes, F.~X. and Fryxell, B. and Lamb, D.~Q. and Olson, K. and Calder, A.~C. and Dursi, L.~J. and Ricker, P. and Rosner, R. and MacNeice, P. and Tufo, H.~M.},
      title = {Helium Detonations on Neutron Stars},
      journal = {The Astrophysical Journal Supplement Series},
      year = {2001},
      volume = {133},
      pages = {195-220},
      url = {http://stacks.iop.org/0067-0049/133/i=1/a=195},
      doi = {http://dx.doi.org/10.1086/319182}
    }
    
    Zingale, M., Timmes, F.X., Fryxell, B., Lamb, D.Q., Olson, K., Ricker, P., Calder, A.C., Dursi, L.J., Rosner, R. & Truran, J.W. 2-dimensional Helium Detonations on the Surface of Neutron Stars 2000 Rossi2000: Astrophysics with the Rossi X-ray Timing Explorer. March 22-24, 2000 at NASA's Goddard Space Flight Center, Greenbelt, MD USA, meeting abstract  misc  
    BibTeX:
    @misc{Zingale2000b,
      author = {Zingale, M. and Timmes, F.~X. and Fryxell, B. and Lamb, D.~Q. and Olson, K. and Ricker, P. and Calder, A.~C. and Dursi, L.~J. and Rosner, R. and Truran, J.~W.},
      title = {2-dimensional Helium Detonations on the Surface of Neutron Stars},
      booktitle = {Rossi2000: Astrophysics with the Rossi X-ray Timing Explorer. March 22-24, 2000 at NASA's Goddard Space Flight Center, Greenbelt, MD USA, meeting abstract},
      year = {2000}
    }
    
    Zingale, M., Woosley, S.E., Cumming, A., Calder, A., Dursi, L.J., Fryxell, B., Olson, K., Ricker, P., Rosner, R. & Timmes, F.X. Investigations of Pointwise Ignition of Helium Deflagrations on Neutron Stars 2003 ASP Conf. Ser. 293: 3D Stellar Evolution, pp. 329-+  inproceedings  
    BibTeX:
    @inproceedings{Zingale2003a,
      author = {Zingale, M. and Woosley, S.~E. and Cumming, A. and Calder, A. and Dursi, L.~J. and Fryxell, B. and Olson, K. and Ricker, P. and Rosner, R. and Timmes, F.~X.},
      title = {Investigations of Pointwise Ignition of Helium Deflagrations on Neutron Stars},
      booktitle = {ASP Conf. Ser. 293: 3D Stellar Evolution},
      year = {2003},
      pages = {329-+}
    }
    
    ZuHone, J.A. A Parameter Space Exploration of Galaxy Cluster Mergers. I. Gas Mixing and the Generation of Cluster Entropy 2011 The Astrophysical Journal
    Vol. 728, pp. 54 
    article  
    BibTeX:
    @article{zuhone2011parameter,
      author = {ZuHone, J. A.},
      title = {A Parameter Space Exploration of Galaxy Cluster Mergers. I. Gas Mixing and the Generation of Cluster Entropy},
      journal = {The Astrophysical Journal},
      publisher = {IOP Publishing},
      year = {2011},
      volume = {728},
      pages = {54}
    }
    
    ZuHone, J.A., Lamb, D.Q. & Ricker, P.M. Rings of Dark Matter in Collisions Between Clusters of Galaxies 2009 The Astrophysical Journal
    Vol. 696, pp. 694 
    article  
    BibTeX:
    @article{zuhone2009rings,
      author = {ZuHone, J. A. and Lamb, D. Q. and Ricker, P. M.},
      title = {Rings of Dark Matter in Collisions Between Clusters of Galaxies},
      journal = {The Astrophysical Journal},
      publisher = {IOP Publishing},
      year = {2009},
      volume = {696},
      pages = {694}
    }
    
    ZuHone, J.A., Markevitch, M., Brunetti, G. & Giacintucci, S. Turbulence and Radio Mini-halos in the Sloshing Cores of Galaxy Clusters 2013 The Astrophysical Journal
    Vol. 762(2), pp. 78 
    article  
    BibTeX:
    @article{zuhone2013turbulence,
      author = {ZuHone, J. A. and Markevitch, Maxim and Brunetti, Gianfranco and Giacintucci, Simona},
      title = {Turbulence and Radio Mini-halos in the Sloshing Cores of Galaxy Clusters},
      journal = {The Astrophysical Journal},
      publisher = {IOP Publishing},
      year = {2013},
      volume = {762},
      number = {2},
      pages = {78}
    }
    
    ZuHone, J.A., Markevitch, M. & Johnson, R.E. Stirring Up the Pot: Can Cooling Flows In Galaxy Clusters Be Quenched By Gas Sloshing? 2010 The Astrophysical Journal
    Vol. 717, pp. 908 
    article  
    BibTeX:
    @article{zuhone2010stirring,
      author = {ZuHone, J. A. and Markevitch, M. and Johnson, R. E.},
      title = {Stirring Up the Pot: Can Cooling Flows In Galaxy Clusters Be Quenched By Gas Sloshing?},
      journal = {The Astrophysical Journal},
      publisher = {IOP Publishing},
      year = {2010},
      volume = {717},
      pages = {908}
    }
    
    ZuHone, J.A., Markevitch, M. & Lee, D. Sloshing of the Magnetized Cool Gas in the Cores of Galaxy Clusters 2011 The Astrophysical Journal
    Vol. 743(1), pp. 16 
    article URL 
    BibTeX:
    @article{0004-637X-743-1-16,
      author = {J. A. ZuHone and M. Markevitch and D. Lee},
      title = {Sloshing of the Magnetized Cool Gas in the Cores of Galaxy Clusters},
      journal = {The Astrophysical Journal},
      year = {2011},
      volume = {743},
      number = {1},
      pages = {16},
      url = {http://stacks.iop.org/0004-637X/743/i=1/a=16}
    }
    
    ZuHone, J.A., Markevitch, M., Ruszkowski, M. & Lee, D. Cold Fronts and Gas Sloshing in Galaxy Clusters with Anisotropic Thermal Conduction 2013 The Astrophysical Journal
    Vol. 762(2), pp. 69 
    article  
    BibTeX:
    @article{zuhone2013cold,
      author = {ZuHone, J. A. and Markevitch, M. and Ruszkowski, M. and Lee, D.},
      title = {Cold Fronts and Gas Sloshing in Galaxy Clusters with Anisotropic Thermal Conduction},
      journal = {The Astrophysical Journal},
      publisher = {IOP Publishing},
      year = {2013},
      volume = {762},
      number = {2},
      pages = {69}
    }
    
    ZuHone, J.A., Ricker, P.M., Lamb, D.Q. & Yang, H.-Y.K. A Line-of-Sight Galaxy Cluster Collision: Simulated X-Ray Observations 2009 The Astrophysical Journal
    Vol. 699(2), pp. 1004-1014 
    article DOI URL 
    BibTeX:
    @article{Zuhone2008arXiv0808.0930,
      author = {J. A. ZuHone and P. M. Ricker and D. Q. Lamb and H.-Y. Karen Yang},
      title = {A Line-of-Sight Galaxy Cluster Collision: Simulated X-Ray Observations},
      journal = {The Astrophysical Journal},
      year = {2009},
      volume = {699},
      number = {2},
      pages = {1004-1014},
      url = {http://stacks.iop.org/0004-637X/699/i=2/a=1004},
      doi = {http://dx.doi.org/10.1088/0004-637X/699/2/1004}
    }
    
    ZuHone, J.A. Simulations of binary galaxy cluster mergers: Modeling real clusters and exploring parameter spaces 2009 School: The University of Chicago  phdthesis  
    Abstract: We present an investigation of controlled N-body/hydrodynamics high-resolution simulations of binary galaxy cluster mergers, performed using the FLASH code. In addition to analyzing the quantities directly from the simulation, we produce simulated X-ray observations of the cluster ICM and perform standard analyses of the surface brightness distribution and spectra of the X-ray photons emitted from the hot cluster gas. Several lines of evidence have suggested that the galaxy cluster Cl 0024+17, an apparently relaxed system, is actually a collision of two clusters, the interaction occurring along our line of sight. We present a high-resolution N -body/hydrodynamics simulation of such a collision. We analyze mock X-ray observations of our simulated clusters to generate radial profiles of the surface brightness and temperature to show that at later times the simulated surface brightness profiles are better fit by a superposition of two b-model profiles than a single profile, in agreement with the observations of Cl 0024+17. We determine from our fitted profiles that if the system is modeled as a single cluster, the hydrostatic mass estimate is a factor ~2-3 less than the actual mass, but if the system is modeled as two galaxy clusters in superposition, a hydrostatic mass estimation can be made which is accurate to within ~10%. Additionally, recent lensing observations of Cl 0024+17 suggest the presence of a ring-like dark matter structure, which has been interpreted as the result of such a collision. To determine the conditions under which such a feature would form, we vary the initial velocity anisotropy of the dark matter particles. Our simulations show a ring feature does not occur even when the initial particle velocity distribution is highly tangentially anisotropic. Only when the initial particle velocity distribution is circular do our simulations show such a feature, which is consistent with the halo velocity distributions seen in cosmological simulations. Lastly, we present a fiducial set of galaxy cluster merger simulations, where the initial mass ratio and the impact parameter have been varied. By projecting the simulated quantities along the axes of the computational domain, we produce maps of X-ray surface brightness, temperature, projected mass density, and simulated X-ray observations. From these observations we compute the observed X-ray luminosity and fitted spectral temperature, and fit b-model profiles to compute estimated hydrostatic masses. From this information we determine the effect of mergers viewed along different projections on these observed quantities. We also construct simulated maps of galaxies, and test the power of a commonly employed substructure statistic to probe for the existence of substructure along the different projections during the merger. Finally, we comment on other aspects of our simulations, such as comparisons to existing merging clusters; and the mixing of the intracluster medium due to merging, and resulting cluster entropy and cooling time profiles.
    BibTeX:
    @phdthesis{ZuHone2009,
      author = {ZuHone, J. A.},
      title = {Simulations of binary galaxy cluster mergers: Modeling real clusters and exploring parameter spaces},
      school = {The University of Chicago},
      year = {2009}
    }
    
    Zybin, S.V., Zhakhovskii, V.V., Bringa, E.M., Abarzhi, S.I. & Remington, B. Molecular Dynamics Simulations of the Richtmyer-Meshkov Instability in Shock Loaded Solids 2006
    Vol. 845Shock Compression of Condensed Matter, pp. 437-441 
    inproceedings DOI  
    BibTeX:
    @inproceedings{Zybin2006,
      author = {Zybin, S.~V. and Zhakhovskii, V.~V. and Bringa, E.~M. and Abarzhi, S.~I. and Remington, B.},
      title = {Molecular Dynamics Simulations of the Richtmyer-Meshkov Instability in Shock Loaded Solids},
      booktitle = {Shock Compression of Condensed Matter},
      year = {2006},
      volume = {845},
      pages = {437-441},
      doi = {http://dx.doi.org/10.1063/1.2263355}
    }
    

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